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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917399
Clone id YMU001_000100_D02
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTAACACCCTTGGACAAAACATCTTGTCCCAAAGAAGTGTAGTTCTGGCAAAAAGAACT
CACTCTTCTTTCCATTGATCGCCAATCTGCGTTCCCGAAGAGCTCTAAACACTCGTGCTA
GATTTGATTTGTACCTTGGGTCGCCCAACAATAACTCCCATCCATGAAAAAGGGACATCA
GTCCCATTGCCTCCATAACAACCACCCGTATCTACGACTCTAAGGAGCCCATTGTAAGCA
TCAATCAACTCGATTAAAAGCCTTCTTAGTGTCCAAACATATCCAAAGCATCAAAGTACT
CCAAACAAACCTCATCAAATCTTCACAATCGGTAATACTCTCAAGCATAATATGCACATT
TAGTAGTACTCCCAAGCAACACTTTCTACTACACAATCTTCCTCTCTGAGTTGCATCTCA
ATATCCATAGCAGCTTCTTTCATTAAGAAAATTTTAGTATTCCCATGCTTAGCACCACCA
TTATCAACTCCTTTCATCACTTTTAGAAGCATCTTCCA
■■Homology search results ■■ -
sp_hit_id P10394
Definition sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster
Align length 39
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917399|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D02.
         (518 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra...    32   1.4  
sp|Q06GL1|NDHH_PIPCE NAD(P)H-quinone oxidoreductase subunit H, c...    30   5.2  
sp|Q8TM02|HDRA_METAC CoB--CoM heterodisulfide reductase 1 iron-s...    30   5.2  
sp|A2RRX6|NPAT_XENLA Protein NPAT OS=Xenopus laevis GN=npat PE=2...    30   8.8  
sp|Q2PMN8|NDHH_SOYBN NAD(P)H-quinone oxidoreductase subunit H, c...    30   8.8  
sp|P25709|NDHH_MAIZE NAD(P)H-quinone oxidoreductase subunit H, c...    30   8.8  

>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from
           transposon 412 OS=Drosophila melanogaster GN=POL PE=4
           SV=1
          Length = 1237

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 124 NLARVFRALRERRLAINGKKSEFFLPELHFFGTRCFVQG 8
           NL  VF   RE  L ++ +K  FF+ E+ F G +C  +G
Sbjct: 489 NLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKG 527


>sp|Q06GL1|NDHH_PIPCE NAD(P)H-quinone oxidoreductase subunit H,
           chloroplastic OS=Piper cenocladum GN=ndhH PE=3 SV=1
          Length = 393

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 287 FGYVWTLRRLLIELIDAYNGLLRVVDTGGCYGGNGTDVPFSWM 159
           F Y++  R LL +L +A  G+ R++      GG  TD+P+ W+
Sbjct: 131 FFYIFRERELLYDLFEAATGM-RMMHNYFRIGGVATDLPYGWI 172


>sp|Q8TM02|HDRA_METAC CoB--CoM heterodisulfide reductase 1
           iron-sulfur subunit A OS=Methanosarcina acetivorans
           GN=hdrA PE=3 SV=1
          Length = 793

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 432 CYGY*DATQRGRLCSRKCCLGVLLNVHIMLESITDCEDLMRFV 304
           C G  D T     CSR CC+  L N  ++ E   D +  + ++
Sbjct: 384 CVGSRDKTVGNEYCSRVCCMAALKNSQMVKERYPDTDVTIHYI 426


>sp|A2RRX6|NPAT_XENLA Protein NPAT OS=Xenopus laevis GN=npat PE=2
           SV=1
          Length = 1356

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 SVQTYPKHQSTPNKPHQIFTIGNTL 342
           S Q  P H  TP +PH ++T+G  +
Sbjct: 838 STQKQPCHFQTPPRPHSVYTVGQAI 862


>sp|Q2PMN8|NDHH_SOYBN NAD(P)H-quinone oxidoreductase subunit H,
           chloroplastic OS=Glycine max GN=ndhH PE=3 SV=1
          Length = 393

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 287 FGYVWTLRRLLIELIDAYNGLLRVVDTGGCYGGNGTDVPFSWM 159
           F Y++  R L+ +L +A  G+ R++      GG  TD+P+ W+
Sbjct: 131 FFYIFRERELIYDLFEAATGM-RMMHNFFRIGGVATDLPYGWV 172


>sp|P25709|NDHH_MAIZE NAD(P)H-quinone oxidoreductase subunit H,
           chloroplastic OS=Zea mays GN=ndhH PE=3 SV=1
          Length = 393

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 287 FGYVWTLRRLLIELIDAYNGLLRVVDTGGCYGGNGTDVPFSWM 159
           F Y++  R L+ +L +A  G+ R++      GG   D+P+ WM
Sbjct: 131 FFYIFRERELIYDLFEAVTGM-RMMHNYFRIGGVAADLPYGWM 172
tr_hit_id B4IP11
Definition tr|B4IP11|B4IP11_DROSE GM16103 OS=Drosophila sechellia
Align length 39
Score (bit) 35.4
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917399|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D02.
         (518 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4IP11|B4IP11_DROSE GM16103 OS=Drosophila sechellia GN=GM1610...    35   1.7  
tr|A7RYT7|A7RYT7_NEMVE Predicted protein OS=Nematostella vectens...    33   6.5  
tr|B0D381|B0D381_LACBS Reverse transcriptase-RNase H-integrase O...    33   8.5  
tr|A8NLJ9|A8NLJ9_COPC7 Putative uncharacterized protein OS=Copri...    33   8.5  
tr|A8MZX8|A8MZX8_COPC7 Putative uncharacterized protein OS=Copri...    33   8.5  

>tr|B4IP11|B4IP11_DROSE GM16103 OS=Drosophila sechellia GN=GM16103
           PE=4 SV=1
          Length = 253

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 124 NLARVFRALRERRLAINGKKSEFFLPELHFFGTRCFVQG 8
           NL  VF+ LR  +L +N  K +FF  EL + G R   QG
Sbjct: 3   NLKEVFKRLRAAKLKVNADKCKFFRKELQYLGHRVTNQG 41


>tr|A7RYT7|A7RYT7_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g204149 PE=4 SV=1
          Length = 342

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = +3

Query: 300 SKQTSSNLHNR*YSQA*YAHLVVLPSNTFYYTIFLSELHLNIHSSFF------H*ENFSI 461
           S ++   LH+  +     +  +VLP++ F YT   S  H+++H+SFF      H   F I
Sbjct: 205 SSRSHVRLHDSFFKITCSSTQLVLPNHMFVYTTRPSRSHVSLHNSFFQVTCSSHNSFFQI 264

Query: 462 PMLSTTI 482
             LST +
Sbjct: 265 TCLSTLV 271



 Score = 33.1 bits (74), Expect = 8.5
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +3

Query: 300 SKQTSSNLHNR*YSQA*YAHLVVLPSNTFYYTIFLSELHLNIHSSFFH*ENFSIPMLSTT 479
           S ++  +LHN  +     +  +VLP + F YT   S  H+ +H SF     F I   ST 
Sbjct: 103 SSRSHVSLHNSFFQITCSSTQLVLPDHMFVYTTRSSRSHVRLHDSF-----FKITCSSTQ 157

Query: 480 IINSFHHF 503
           ++   H F
Sbjct: 158 LVLPDHMF 165


>tr|B0D381|B0D381_LACBS Reverse transcriptase-RNase H-integrase
           OS=Laccaria bicolor (strain S238N-H82)
           GN=LACBIDRAFT_315808 PE=4 SV=1
          Length = 1572

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 133 YKSNLARVFRALRERRLAINGKKSEFFLPELHFFGTRCFVQG 8
           ++ N++ + +ALRE RL IN +K+  F  E+ F G      G
Sbjct: 758 HEKNVSTILQALREARLYINPEKTNLFCLEIDFLGHHISAHG 799


>tr|A8NLJ9|A8NLJ9_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_05843 PE=4 SV=1
          Length = 1641

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 133 YKSNLARVFRALRERRLAINGKKSEFFLPELHFFG 29
           ++ ++  +  ALR+ +L +NGKKS+FF   + F G
Sbjct: 858 HEKHVRLILEALRKNKLYLNGKKSKFFCESVDFLG 892


>tr|A8MZX8|A8MZX8_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_02743 PE=4 SV=1
          Length = 1689

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 133 YKSNLARVFRALRERRLAINGKKSEFFLPELHFFG 29
           ++ ++  +  ALR+ +L +NGKKS+FF   + F G
Sbjct: 891 HEKHVRLILEALRKNKLYLNGKKSKFFCESVDFLG 925