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NBDC - LSDB Archive
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BP917404
Clone id YMU001_000100_D08
Library
Length 626
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTATGGCCATCTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAG
AGAGCTTGTCAAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCC
CCAACCCGCTCGCCATCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGT
ATGACAACAAGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTG
CGAAGCAGGTGGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAA
TCGGGAGCGTGTACTGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGG
TGATGTGGAAGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTG
CAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTATGACGCTAAGA
GGCAGTGTTGCAGGTCTCCTGGCTTCCTTGTCCAGAACGCCCTCTGTCTAAACTTTCTTA
AAGCAAGCCAATTGAGTTGGCATGAATGCCTGCTTCCCATTTCCCACTGGCGCCTAACAA
GCTTGCTCTTATGAGCTTGTGTGTCC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 146
Score (bit) 172.0
E-value 2.0e-42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917404|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D08.
         (626 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   172   2e-42
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   169   1e-41
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   168   2e-41
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   167   3e-41
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   167   5e-41
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   166   7e-41
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   166   9e-41
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   166   1e-40
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   166   1e-40
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   165   2e-40
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   165   2e-40
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   164   3e-40
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   164   3e-40
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   164   3e-40
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   164   3e-40
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   164   3e-40
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   164   3e-40
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   164   4e-40
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   163   6e-40
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   163   6e-40
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   163   6e-40
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   163   8e-40
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   163   8e-40
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   162   1e-39
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   162   1e-39
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   162   2e-39
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   161   2e-39
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   161   2e-39
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   161   3e-39
sp|Q08186|RBS6_MESCR Ribulose bisphosphate carboxylase small cha...   160   4e-39

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  172 bits (435), Expect = 2e-42
 Identities = 81/146 (55%), Positives = 103/146 (70%), Gaps = 5/146 (3%)
 Frame = +3

Query: 63  SLSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 230
           SL+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS 
Sbjct: 21  SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 231 EQIAKQVDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 407
           E ++K++D+++R  W PC+EF+ + G VY EH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 408 LREIAECAKEYPEAFIRVLGYDAKRQ 485
           ++E+ EC KEYP AFIRV+G+D  RQ
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQ 166


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  169 bits (427), Expect = 1e-41
 Identities = 83/146 (56%), Positives = 104/146 (71%), Gaps = 5/146 (3%)
 Frame = +3

Query: 63  SLSKSFSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 230
           S+   F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSS
Sbjct: 23  SMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSS 82

Query: 231 EQIAKQVDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 407
           EQ+AK+VD+++RK   PC+EF+ + G VY EH    GYYDGRYW MWKLPMFGC D++ V
Sbjct: 83  EQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQV 142

Query: 408 LREIAECAKEYPEAFIRVLGYDAKRQ 485
           L+E+ EC K YP AFIR++G+D KRQ
Sbjct: 143 LKELEECKKAYPSAFIRIIGFDNKRQ 168


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  168 bits (426), Expect = 2e-41
 Identities = 81/145 (55%), Positives = 101/145 (69%), Gaps = 4/145 (2%)
 Frame = +3

Query: 63  SLSKSFSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 230
           S+   F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS 
Sbjct: 21  SMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSV 80

Query: 231 EQIAKQVDFMVRKGWTPCIEFDKIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 410
           E +AK+VD+++R  W PCIEF K G VY E+    GYYDGRYW MWKLPMFGC DA+ V+
Sbjct: 81  EDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVI 140

Query: 411 REIAECAKEYPEAFIRVLGYDAKRQ 485
            E+ E  K YPE F+R++G+D KRQ
Sbjct: 141 AEVEEAKKAYPEYFVRIIGFDNKRQ 165


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  167 bits (424), Expect = 3e-41
 Identities = 80/140 (57%), Positives = 99/140 (70%), Gaps = 4/140 (2%)
 Frame = +3

Query: 78  FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 245
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 246 QVDFMVRKGWTPCIEFDKIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 425
           +VD+++R  W PCIEF K G VY E+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 426 CAKEYPEAFIRVLGYDAKRQ 485
             K YPE F+R++G+D KRQ
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQ 165


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  167 bits (422), Expect = 5e-41
 Identities = 76/137 (55%), Positives = 96/137 (70%)
 Frame = +3

Query: 75  SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 254
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 255 FMVRKGWTPCIEFDKIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 434
           +++R GW PCIEF K+G VY E+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 435 EYPEAFIRVLGYDAKRQ 485
            YP+ F R++G+D  RQ
Sbjct: 148 AYPDYFNRIIGFDNTRQ 164


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  166 bits (421), Expect = 7e-41
 Identities = 79/145 (54%), Positives = 106/145 (73%), Gaps = 4/145 (2%)
 Frame = +3

Query: 63  SLSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 233
           +L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ E
Sbjct: 20  NLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDE 79

Query: 234 QIAKQVDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 410
           Q+ K+V++++RKGW PC+EF+ + G V+ ++    GYYDGRYW MW+LP+FG  DAA VL
Sbjct: 80  QLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVL 139

Query: 411 REIAECAKEYPEAFIRVLGYDAKRQ 485
           +E+AEC  EYPEAFIR++G+D  RQ
Sbjct: 140 KEVAECKAEYPEAFIRIIGFDNVRQ 164


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  166 bits (420), Expect = 9e-41
 Identities = 78/146 (53%), Positives = 100/146 (68%), Gaps = 5/146 (3%)
 Frame = +3

Query: 63  SLSKSFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 230
           S+  SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP LS 
Sbjct: 21  SMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSD 80

Query: 231 EQIAKQVDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 407
           EQ+ K+++++++KGW PC+EF+ + G VY EH    GYYDGRYW MWKLPMFGC DA  V
Sbjct: 81  EQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQV 140

Query: 408 LREIAECAKEYPEAFIRVLGYDAKRQ 485
           L E+ E  K YP+A+IR++G+D  RQ
Sbjct: 141 LNEVQEAKKAYPQAWIRIIGFDNVRQ 166


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  166 bits (419), Expect = 1e-40
 Identities = 78/140 (55%), Positives = 101/140 (72%), Gaps = 4/140 (2%)
 Frame = +3

Query: 78  FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 248
           F+GLK+   F   K  N  +   SNG RV  M VW P   KK+ETLSYLPPL+  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 249 VDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 425
           VD+++RK W PC+EF+ + G VY E+    GYYDGRYW MWKLPMFGC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 426 CAKEYPEAFIRVLGYDAKRQ 485
           C KEYP+A+IR++G+D  RQ
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQ 164


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  166 bits (419), Expect = 1e-40
 Identities = 77/141 (54%), Positives = 101/141 (71%), Gaps = 5/141 (3%)
 Frame = +3

Query: 78  FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 245
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 246 QVDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 422
           +VD+++R  W PC+EF+ + G VY EH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 423 ECAKEYPEAFIRVLGYDAKRQ 485
           EC KEYP AFIR++G+D  RQ
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQ 164


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  165 bits (417), Expect = 2e-40
 Identities = 79/140 (56%), Positives = 103/140 (73%), Gaps = 4/140 (2%)
 Frame = +3

Query: 78  FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 248
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 249 VDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 425
           VD+++RK W PC+EF+ + G VY E+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 426 CAKEYPEAFIRVLGYDAKRQ 485
             K YP++FIR++G+D  RQ
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQ 169
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 270.0
E-value 4.0e-71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917404|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D08.
         (626 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   270   4e-71
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   178   3e-43
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   174   5e-42
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   173   7e-42
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   172   2e-41
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   172   2e-41
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   171   3e-41
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   171   3e-41
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   171   3e-41
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   169   2e-40
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   167   4e-40
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   167   4e-40
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   167   4e-40
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   167   4e-40
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c...   167   6e-40
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza...   167   6e-40
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c...   167   6e-40
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   166   8e-40
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   166   8e-40
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   166   1e-39

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  270 bits (691), Expect = 4e-71
 Identities = 128/152 (84%), Positives = 140/152 (92%)
 Frame = +3

Query: 60  ESLSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQI 239
           ESLSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QI
Sbjct: 20  ESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQI 79

Query: 240 AKQVDFMVRKGWTPCIEFDKIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREI 419
           AKQV++MVRKGWTPCIEFD IGSVY EHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREI
Sbjct: 80  AKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREI 139

Query: 420 AECAKEYPEAFIRVLGYDAKRQCCRSPGFLVQ 515
           AECAKEYP AFIRVLG+DAKRQ  +  GFLV+
Sbjct: 140 AECAKEYPTAFIRVLGFDAKRQ-VQVAGFLVK 170


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  185 bits (469), Expect = 2e-45
 Identities = 90/150 (60%), Positives = 110/150 (73%), Gaps = 3/150 (2%)
 Frame = +3

Query: 72  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 251
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 252 DFMVRKGWTPCIEFDKIGSVY*EHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 422
           DFM+++   PCIEFD +GSV   +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 423 ECAKEYPEAFIRVLGYDAKRQCCRSPGFLV 512
           EC + +P  ++RVLG+D+K+Q  +  GFLV
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQ-VQICGFLV 175


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  182 bits (461), Expect = 2e-44
 Identities = 89/150 (59%), Positives = 109/150 (72%), Gaps = 3/150 (2%)
 Frame = +3

Query: 72  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 251
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 252 DFMVRKGWTPCIEFDKIGSVY*EHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 422
           DFM+++   PCIEFD +GSV   +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 423 ECAKEYPEAFIRVLGYDAKRQCCRSPGFLV 512
           EC + +P  ++RVLG+D+K+Q  +  GFLV
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQ-VQICGFLV 175


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  181 bits (459), Expect = 3e-44
 Identities = 87/150 (58%), Positives = 108/150 (72%), Gaps = 3/150 (2%)
 Frame = +3

Query: 72  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 251
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 252 DFMVRKGWTPCIEFDKIGSVY*EHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 422
           D+M+++   PCIEFD +G+V   +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 423 ECAKEYPEAFIRVLGYDAKRQCCRSPGFLV 512
           EC   YP  ++RVLG+D+K+Q  +  GFLV
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQ-VQICGFLV 180


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  181 bits (458), Expect = 4e-44
 Identities = 86/150 (57%), Positives = 110/150 (73%), Gaps = 3/150 (2%)
 Frame = +3

Query: 72  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 251
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 252 DFMVRKGWTPCIEFDKIGSVY*EHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 422
           D+M+++   PCIEFD +GSV   +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 423 ECAKEYPEAFIRVLGYDAKRQCCRSPGFLV 512
           EC  ++P  ++RVLG+D+K+Q  +  GFLV
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQ-VQICGFLV 210


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  181 bits (458), Expect = 4e-44
 Identities = 87/150 (58%), Positives = 109/150 (72%), Gaps = 3/150 (2%)
 Frame = +3

Query: 72  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 251
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 252 DFMVRKGWTPCIEFDKIGSVY*EHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 422
           D+M+++   PCIEFD +GSV   +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 423 ECAKEYPEAFIRVLGYDAKRQCCRSPGFLV 512
           EC  ++P  ++RVLG+D+K+Q  +  GFLV
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQ-VQICGFLV 180


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  178 bits (451), Expect = 3e-43
 Identities = 84/150 (56%), Positives = 110/150 (73%), Gaps = 3/150 (2%)
 Frame = +3

Query: 72  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 251
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 252 DFMVRKGWTPCIEFDKIGSVY*EHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 422
           D+M+++   PCIEFD +GSV   +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 423 ECAKEYPEAFIRVLGYDAKRQCCRSPGFLV 512
           EC  ++P  ++RVLG+D+K+Q  +  GFLV
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQ-VQICGFLV 179


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  174 bits (440), Expect = 5e-42
 Identities = 81/146 (55%), Positives = 104/146 (71%), Gaps = 5/146 (3%)
 Frame = +3

Query: 63  SLSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 230
           SL+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS 
Sbjct: 21  SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 231 EQIAKQVDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 407
           E ++K++D+++R  W PC+EF+ + G VY EH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 408 LREIAECAKEYPEAFIRVLGYDAKRQ 485
           ++E+ EC KEYP AFIRV+G+D+ RQ
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDSVRQ 166


>tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small
           chain OS=Camellia sinensis GN=rbcS PE=2 SV=1
          Length = 176

 Score =  173 bits (439), Expect = 7e-42
 Identities = 84/160 (52%), Positives = 106/160 (66%), Gaps = 12/160 (7%)
 Frame = +3

Query: 63  SLSKSFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 230
           S++  F+GLK+T+ F         I    SNG RV  M VW P   KKFETLSYLPPL+ 
Sbjct: 17  SMAAPFTGLKSTSAFPVTRKLDTDITSLASNGGRVQCMKVWPPLGLKKFETLSYLPPLTQ 76

Query: 231 EQIAKQVDFMVRKGWTPCIEFDKIGS-VY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 407
            Q+ K+VD+++R GW PC+EF   G  VY EH    GYYDGRYW MWKLPMFGC D++ V
Sbjct: 77  AQLGKEVDYLIRLGWIPCLEFSVQGGFVYREHNKSPGYYDGRYWTMWKLPMFGCTDSSQV 136

Query: 408 LREIAECAKEYPEAFIRVLGYDAKRQ-------CCRSPGF 506
           L+E+ EC KEYP++FIR++G+D KRQ       C + PGF
Sbjct: 137 LKEVEECKKEYPQSFIRIIGFDNKRQVQCISFICYKPPGF 176


>tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small
           chain OS=Ammopiptanthus mongolicus PE=2 SV=1
          Length = 174

 Score =  172 bits (435), Expect = 2e-41
 Identities = 80/146 (54%), Positives = 103/146 (70%), Gaps = 5/146 (3%)
 Frame = +3

Query: 63  SLSKSFSGLKATTLF-APKSPNP---LAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 230
           S+   F+GLK+   F  P+  N       +NG RV  MLVW P   KKFETLSYLPPLS 
Sbjct: 13  SMGAPFTGLKSMASFPVPRKVNSDITTIANNGGRVQCMLVWPPLGRKKFETLSYLPPLSI 72

Query: 231 EQIAKQVDFMVRKGWTPCIEFD-KIGSVY*EHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 407
           E + K+V++++RKGW PC+EF+ + G VY E+    GYYDGRYW MWKLPMFGC DA+ V
Sbjct: 73  ESLTKEVEYLLRKGWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCSDASQV 132

Query: 408 LREIAECAKEYPEAFIRVLGYDAKRQ 485
           ++E+ EC KEYP AF+R++G+D KRQ
Sbjct: 133 MKELEECKKEYPTAFVRIIGFDNKRQ 158