BP917405
Clone id YMU001_000100_D09
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCACTTTGACAAATCAATTTATGACCCTAAAAGAAAAAGTATATTTGGTATGTTAACATC
ACTATGACTTGCTTTGTCAAGGCTCAGATTTCATACTACTTTGAAAGCATTTGGCCCTGC
AAGCTTGGATTGCACAAGCGCAACACGCTACTAGCAAAGATATAGGTCTTCAACTCAAAA
CATCAAGAACTAATTGTCGCCGAAGTGTTGACAGCCCAAAAACTGCTAACTTCAGCAGAC
TAGTAGGATAAAGAAAGTGTCGTTTAGCGTCGCAAATGCAAGCACTAAAGAACCTTTGAG
CCCATCCACCTTTTTCTTCAACCTTTGTCATTTTGCAGCAACCCCAAAACAATGTGAATA
GAAGCATGTCAAAAGCTCTGCAACTGGGCTATGCTATGCTTCAAAAGAAAATGCCTTCTG
TACAACCATTACCTCGAACATGCATAAACAATTAGCCCATTCCCACCTACACATTAGGAC
TCCAGTCAAAAGGCTGGTAAA
■■Homology search results ■■ -
sp_hit_id Q6GPA5
Definition sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis
Align length 26
Score (bit) 30.0
E-value 6.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917405|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D09.
(501 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis... 30 6.3
sp|Q9K6V7|FLIW_BACHD Flagellar assembly factor fliW OS=Bacillus ... 30 8.2

>sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis
GN=ttyh3 PE=2 SV=1
Length = 522

Score = 30.0 bits (66), Expect = 6.3
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -3

Query: 385 SCRAFDML--LFTLFWGCCKMTKVEE 314
SC A D+L LF FW CC+ K EE
Sbjct: 53 SCLALDLLFLLFYSFWFCCRHRKTEE 78


>sp|Q9K6V7|FLIW_BACHD Flagellar assembly factor fliW OS=Bacillus
halodurans GN=fliW PE=1 SV=1
Length = 151

Score = 29.6 bits (65), Expect = 8.2
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3

Query: 309 PFSSTFVILQQP-QNNVNRSMSKALQLGYAMLQKKMPSVQ 425
PFS T V LQ P N N+ M K L LG +K P Q
Sbjct: 102 PFSETTVNLQAPIVINANKQMGKQLVLGDTAYDRKQPLFQ 141


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917405|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D09.
(501 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******