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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917405
Clone id YMU001_000100_D09
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCACTTTGACAAATCAATTTATGACCCTAAAAGAAAAAGTATATTTGGTATGTTAACATC
ACTATGACTTGCTTTGTCAAGGCTCAGATTTCATACTACTTTGAAAGCATTTGGCCCTGC
AAGCTTGGATTGCACAAGCGCAACACGCTACTAGCAAAGATATAGGTCTTCAACTCAAAA
CATCAAGAACTAATTGTCGCCGAAGTGTTGACAGCCCAAAAACTGCTAACTTCAGCAGAC
TAGTAGGATAAAGAAAGTGTCGTTTAGCGTCGCAAATGCAAGCACTAAAGAACCTTTGAG
CCCATCCACCTTTTTCTTCAACCTTTGTCATTTTGCAGCAACCCCAAAACAATGTGAATA
GAAGCATGTCAAAAGCTCTGCAACTGGGCTATGCTATGCTTCAAAAGAAAATGCCTTCTG
TACAACCATTACCTCGAACATGCATAAACAATTAGCCCATTCCCACCTACACATTAGGAC
TCCAGTCAAAAGGCTGGTAAA
■■Homology search results ■■ -
sp_hit_id Q6GPA5
Definition sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis
Align length 26
Score (bit) 30.0
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917405|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D09.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis...    30   6.3  
sp|Q9K6V7|FLIW_BACHD Flagellar assembly factor fliW OS=Bacillus ...    30   8.2  

>sp|Q6GPA5|TTYH3_XENLA Protein tweety homolog 3 OS=Xenopus laevis
           GN=ttyh3 PE=2 SV=1
          Length = 522

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 385 SCRAFDML--LFTLFWGCCKMTKVEE 314
           SC A D+L  LF  FW CC+  K EE
Sbjct: 53  SCLALDLLFLLFYSFWFCCRHRKTEE 78


>sp|Q9K6V7|FLIW_BACHD Flagellar assembly factor fliW OS=Bacillus
           halodurans GN=fliW PE=1 SV=1
          Length = 151

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 309 PFSSTFVILQQP-QNNVNRSMSKALQLGYAMLQKKMPSVQ 425
           PFS T V LQ P   N N+ M K L LG     +K P  Q
Sbjct: 102 PFSETTVNLQAPIVINANKQMGKQLVLGDTAYDRKQPLFQ 141
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917405|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D09.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******