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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917408
Clone id YMU001_000100_D12
Library
Length 563
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTCGATAATAGCGTAGATATCAAAATAAACGCATGAACAAACGAAACAAAATGAAAGAA
TATTAAGTACCTTTGTTAACCAAAAAGAACACAGTACTTAAGGGTGGTTGAAGCAACTGA
TCGCCTTAAAGATGGGATATCTAAGAGGTACATGAAACCCGACTCAATCAAAACAAAATT
GAAAAAGAAGAACAAACAAAAACCATAGACGGAAAAGTATTTCTAAAAAAAAATTGAAGT
TGTCCAAAATTGAGTGCAAAAACAAGTACAATGAATTGAAACTAGCTTTGAAAGAAGTTT
GGAAGACAGAGTTGGAAATTAATGATGAATCAAACAATGATAAGTTTGACGCACCATCCC
ACCACTACAAAAAGTACACTATTCAAGATAGAAAAATTGTGGTGCTAAAACCCAAACGAG
GCCCAAAAGAGCCGGAGCTTTATATGATGGGCCTGAAAAAGCCAAATGAATAAACTTAGC
AGAACCAAGCAAGGAACCTAAACCAGCATACATTGCCATGGATCTCACGAAAGAAGAAGA
GCGACTTCTGATAGATACACTCA
■■Homology search results ■■ -
sp_hit_id Q09226
Definition sp|Q09226|ALG6_CAEEL Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Caenorhabditis elegans
Align length 101
Score (bit) 31.2
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917408|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D12.
         (563 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09226|ALG6_CAEEL Probable dolichyl pyrophosphate Man9GlcNAc2...    31   3.7  

>sp|Q09226|ALG6_CAEEL Probable dolichyl pyrophosphate Man9GlcNAc2
           alpha-1,3-glucosyltransferase OS=Caenorhabditis elegans
           GN=C08B11.8 PE=2 SV=1
          Length = 503

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = -1

Query: 458 FQAHHIKLRLFWASFGF*HHNFSILNSVLFVVVGWCVKLIIV*FIINFQL-----CLPNF 294
           FQ + I L LF A++ F   NF+I+ S+LFV              +N++       LP F
Sbjct: 202 FQYNSISLGLFLATYMFLTKNFTIIGSILFVAA------------LNYKQMELYHALPVF 249

Query: 293 FQS*FQFIVLVFALNFGQLQFFFRNTFPSMVFVCSSFSILF 171
                   +L  ++N  QL   FR      +FV  +F I++
Sbjct: 250 ------VFILARSINKTQLFNSFRRILTIGLFVVGTFLIIW 284
tr_hit_id Q8HQ09
Definition tr|Q8HQ09|Q8HQ09_THRIM NADH-ubiquinone oxidoreductase chain 4 OS=Thrips imaginis
Align length 114
Score (bit) 35.4
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917408|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_D12.
         (563 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8HQ09|Q8HQ09_THRIM NADH-ubiquinone oxidoreductase chain 4 OS...    35   2.2  
tr|Q4YNF4|Q4YNF4_PLABE Putative uncharacterized protein (Fragmen...    35   2.8  
tr|Q17PL5|Q17PL5_AEDAE Putative uncharacterized protein OS=Aedes...    34   6.3  

>tr|Q8HQ09|Q8HQ09_THRIM NADH-ubiquinone oxidoreductase chain 4
           OS=Thrips imaginis GN=nad4 PE=3 SV=1
          Length = 442

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
 Frame = -2

Query: 553 YQKSLFFFREIHGNV---CWFRFLAWFC*VYSFGFFRPII*SSGSFGPRLGFSTTIFLS* 383
           +  S FFF    G +    W+ FL  F  +Y + F   +  S G F     +    F S 
Sbjct: 6   FSNSFFFFVLFFGVLNMSSWWVFL--FFLMYIYPFLHCMNFSLGFFSKNY-YICLDFFSF 62

Query: 382 IVYFL*WWDGASNLSLFDSSLISNSVFQTSFKASFNSLYLFLHS--ILDNFNFF 227
           ++  L +W     LS+  S +I N  F  SF   F SL++FL +  I++NF FF
Sbjct: 63  LMLILTFW--VVFLSIISSLMIKNLKFSYSFILMFFSLFIFLLTFFIVNNFFFF 114


>tr|Q4YNF4|Q4YNF4_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB108587.00.0 PE=4 SV=1
          Length = 128

 Score = 35.0 bits (79), Expect = 2.8
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = -1

Query: 470 FIWLFQAHHIKLR-LFWASFGF*HHNFSILNSVLFVVVGWCVKLIIV*FIINFQLCLPNF 294
           +I++F  +  K+  LF  SF + H  F ++N + F++       +I  FI NF      F
Sbjct: 20  YIFIFFLNFFKIMILFHISFIYFHKLFCLIN-LCFIIFA-----MIFFFIFNF------F 67

Query: 293 FQS*FQFIVLVFALNFGQLQFFFRNTFPSMVFVCSSFSILF 171
           +   F + ++ F  NF QL FF    F  ++F CSS   LF
Sbjct: 68  Y---FLYFIIFFIKNF-QLMFFVIWVFYPILFSCSSIFALF 104


>tr|Q17PL5|Q17PL5_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL000322 PE=4 SV=1
          Length = 681

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 486 GSAKFIHLAFSGPSYKAPALLGLVWVLAPQFFYLE*CTFCSGGMVRQTYHCLIHH 322
           G  + +HL+   P  +  A    + V A Q  Y E CTFC G +      C+ +H
Sbjct: 562 GDYEHVHLSLKPPMEEVIARANELLVTAQQQLYQEECTFCGGSIPEAKLTCVENH 616