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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917412
Clone id YMU001_000100_E05
Library
Length 394
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTTCCTAGACTTCTGGGAGTCTGTATCCATCTCGTGCTCTTCTGCTACCACAGCCTTAT
GTTGTGGAGTCTCCACTTGCACGTCTGCTGACCTGCACGCTACGTTCAAGTCACGAAGGC
AGCTTTACAAGATAGGGTGGTTATGAAAATACCTTAACGAGCGCTTGAAAGAGTGACTCA
CTTTTTCTTAAAATGTGGCTCATTACTGGCCTCTTTTTGTTTTCTCTTACGACCACTGCC
ATCACAAATAGATTCACCTGCAGCGGCACTACCACCATCTACTTGCTTCTGAGGTTTCTT
TTCGTTGGCCACTACATCAACAACAGCCACTTGTTGTTTTCTGTGACGTTTGACACGAAA
GCCGTCCTCATCCTCACTGCTGTTATCCTGCTTA
■■Homology search results ■■ -
sp_hit_id Q8R0F5
Definition sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus
Align length 66
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917412|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_E05.
         (394 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=M...    32   0.99 
sp|Q2HFA6|PXR1_CHAGB Protein PXR1 OS=Chaetomium globosum GN=PXR1...    31   1.7  
sp|P77611|RNFC_ECOLI Electron transport complex protein rnfC OS=...    30   3.7  
sp|B1IQC5|RNFC_ECOLC Electron transport complex protein rnfC OS=...    30   3.7  
sp|A8A0H2|RNFC_ECOHS Electron transport complex protein rnfC OS=...    30   3.7  
sp|Q3Z1Y4|RNFC_SHISS Electron transport complex protein rnfC OS=...    30   4.9  
sp|Q32FE4|RNFC_SHIDS Electron transport complex protein rnfC OS=...    30   4.9  
sp|Q320Y6|RNFC_SHIBS Electron transport complex protein rnfC OS=...    30   4.9  
sp|Q0THJ8|RNFC_ECOL5 Electron transport complex protein rnfC OS=...    30   4.9  
sp|P58324|RNFC_ECO57 Electron transport complex protein rnfC OS=...    30   4.9  
sp|A7ZM89|RNFC_ECO24 Electron transport complex protein rnfC OS=...    30   4.9  
sp|Q83RB9|RNFC_SHIFL Electron transport complex protein rnfC OS=...    29   6.4  
sp|Q0T4E8|RNFC_SHIF8 Electron transport complex protein rnfC OS=...    29   6.4  
sp|Q1RBG7|RNFC_ECOUT Electron transport complex protein rnfC OS=...    29   6.4  
sp|Q8FH95|RNFC_ECOL6 Electron transport complex protein rnfC OS=...    29   6.4  
sp|A1ABH4|RNFC_ECOK1 Electron transport complex protein rnfC OS=...    29   6.4  
sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericel...    29   6.4  
sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog OS=C...    29   6.4  
sp|O14323|MCP4_SCHPO Meiotic coiled-coil protein 4 OS=Schizosacc...    29   6.4  
sp|P19435|YGL2_STRVR Uncharacterized 23.9 kDa protein in glnII r...    29   8.3  
sp|Q5JPF3|U634C_HUMAN UPF0634 protein C OS=Homo sapiens PE=2 SV=2      29   8.3  

>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus
           musculus GN=Rbmx2 PE=1 SV=1
          Length = 326

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 378 SEDEDGFRVKRHRKQQVAVVDVVANEKKPQKQVDGGSAAAGESICDGSGR-KRKQKEASN 202
           SEDED    K+H+K +         +KK +K+   G A A +  C  S   K K+ E ++
Sbjct: 149 SEDEDAKLTKKHKKDK-------KEKKKRKKEKTEGQAQAEQPSCSRSATVKEKKDERAS 201

Query: 201 EPHFKK 184
             H  K
Sbjct: 202 RKHSSK 207


>sp|Q2HFA6|PXR1_CHAGB Protein PXR1 OS=Chaetomium globosum GN=PXR1
           PE=3 SV=2
          Length = 368

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -2

Query: 387 DNSSEDEDGFRVKRHRKQQVAVVDVVANEKKPQKQVDGGSAAAGESICDGSG--RKRKQK 214
           +  +E +D  R K+ +K++         EKK +++++  +A +G    D     +KRK+K
Sbjct: 250 NTKNEKKDKKRDKKEKKERRD-----KKEKKEKRRIEKAAAESGAETGDSISEEKKRKKK 304

Query: 213 EASNEP 196
           EA++EP
Sbjct: 305 EATSEP 310


>sp|P77611|RNFC_ECOLI Electron transport complex protein rnfC
           OS=Escherichia coli (strain K12) GN=rnfC PE=3 SV=1
          Length = 740

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 297 KPQKQVDGGSAAAGESICDGSGRKRKQKEASNEP 196
           +P++QVD   AA   +I     RKR+Q+ A+ EP
Sbjct: 643 EPEQQVDPRKAAVEAAIARAKARKREQQPANAEP 676



 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = -2

Query: 393 KQDNSSEDEDGFRVKRHRKQQVAVVDVVANEKK---------PQKQVDGGSAAAGESICD 241
           KQ    +  D   V   RK  V      A  +K         P++QVD   AA   +I  
Sbjct: 538 KQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIAR 597

Query: 240 GSGRKRKQKEASNEP 196
              RK +Q++A+ EP
Sbjct: 598 AKARKLEQQQANAEP 612


>sp|B1IQC5|RNFC_ECOLC Electron transport complex protein rnfC
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=rnfC PE=3 SV=1
          Length = 740

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 297 KPQKQVDGGSAAAGESICDGSGRKRKQKEASNEP 196
           +P++QVD   AA   +I     RKR+Q+ A+ EP
Sbjct: 643 EPEQQVDPRKAAVEAAIARAKARKREQQPANAEP 676



 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = -2

Query: 393 KQDNSSEDEDGFRVKRHRKQQVAVVDVVANEKK---------PQKQVDGGSAAAGESICD 241
           KQ    +  D   V   RK  V      A  +K         P++QVD   AA   +I  
Sbjct: 538 KQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIAR 597

Query: 240 GSGRKRKQKEASNEP 196
              RK +Q++A+ EP
Sbjct: 598 AKARKLEQQQANAEP 612


>sp|A8A0H2|RNFC_ECOHS Electron transport complex protein rnfC
           OS=Escherichia coli O9:H4 (strain HS) GN=rnfC PE=3 SV=1
          Length = 740

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 297 KPQKQVDGGSAAAGESICDGSGRKRKQKEASNEP 196
           KP++QVD   AA   +I     RK +Q++A+ EP
Sbjct: 611 KPEEQVDPRKAAVEAAIARAKARKLEQQQANAEP 644


>sp|Q3Z1Y4|RNFC_SHISS Electron transport complex protein rnfC
           OS=Shigella sonnei (strain Ss046) GN=rnfC PE=3 SV=1
          Length = 740

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = -2

Query: 393 KQDNSSEDEDGFRVKRHRKQQVAVVDVVANEKK---------PQKQVDGGSAAAGESICD 241
           KQ    +  D   V   RK  V      A  +K         P++QVD   AA   +I  
Sbjct: 538 KQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIAR 597

Query: 240 GSGRKRKQKEASNEP 196
              RK +Q++A+ EP
Sbjct: 598 AKARKLEQQQANAEP 612


>sp|Q32FE4|RNFC_SHIDS Electron transport complex protein rnfC
           OS=Shigella dysenteriae serotype 1 (strain Sd197)
           GN=rnfC PE=3 SV=1
          Length = 772

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = -2

Query: 393 KQDNSSEDEDGFRVKRHRKQQVAVVDVVANEKK---------PQKQVDGGSAAAGESICD 241
           KQ    +  D   V   RK  V      A  +K         P++QVD   AA   +I  
Sbjct: 538 KQAELQQTNDAATVTDPRKTAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIAR 597

Query: 240 GSGRKRKQKEASNEP 196
              RK +Q++A+ EP
Sbjct: 598 AKARKLEQQQANAEP 612


>sp|Q320Y6|RNFC_SHIBS Electron transport complex protein rnfC
           OS=Shigella boydii serotype 4 (strain Sb227) GN=rnfC
           PE=3 SV=1
          Length = 740

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = -2

Query: 393 KQDNSSEDEDGFRVKRHRKQQVAVVDVVANEKK---------PQKQVDGGSAAAGESICD 241
           KQ    +  D   V   RK  V      A  +K         P++QVD   AA   +I  
Sbjct: 538 KQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIAR 597

Query: 240 GSGRKRKQKEASNEP 196
              RK +Q++A+ EP
Sbjct: 598 AKARKLEQQQANAEP 612


>sp|Q0THJ8|RNFC_ECOL5 Electron transport complex protein rnfC
           OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
           GN=rnfC PE=3 SV=1
          Length = 774

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = -2

Query: 393 KQDNSSEDEDGFRVKRHRKQQVAVVDVVANEKK---------PQKQVDGGSAAAGESICD 241
           KQ    +  D   V   RK  V      A  +K         P++QVD   AA   +I  
Sbjct: 538 KQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIAR 597

Query: 240 GSGRKRKQKEASNEP 196
              RK +Q++A+ EP
Sbjct: 598 AKARKLEQQQANAEP 612


>sp|P58324|RNFC_ECO57 Electron transport complex protein rnfC
           OS=Escherichia coli O157:H7 GN=rnfC PE=3 SV=1
          Length = 740

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = -2

Query: 393 KQDNSSEDEDGFRVKRHRKQQVAVVDVVANEKK---------PQKQVDGGSAAAGESICD 241
           KQ    +  D   V   RK  V      A  +K         P++QVD   AA   +I  
Sbjct: 538 KQAELQQTNDAATVTDPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIAR 597

Query: 240 GSGRKRKQKEASNEP 196
              RK +Q++A+ EP
Sbjct: 598 AKARKLEQQQANAEP 612



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 297 KPQKQVDGGSAAAGESICDGSGRKRKQKEASNEP 196
           +P++QVD   AA   +I     RK +Q++A+ EP
Sbjct: 675 EPEEQVDPRKAAVAAAIARAKARKLEQQQANAEP 708
tr_hit_id Q8I1S3
Definition tr|Q8I1S3|Q8I1S3_PLAF7 Putative uncharacterized protein PFD0795w OS=Plasmodium falciparum (isolate 3D7)
Align length 51
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917412|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_E05.
         (394 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8I1S3|Q8I1S3_PLAF7 Putative uncharacterized protein PFD0795w...    35   2.4  
tr|Q54PH6|Q54PH6_DICDI Putative uncharacterized protein OS=Dicty...    35   2.4  
tr|A4RE33|A4RE33_MAGGR Putative uncharacterized protein OS=Magna...    33   7.1  
tr|Q6PE29|Q6PE29_DANRE Zgc:65749 OS=Danio rerio GN=zgc:65749 PE=...    33   9.2  
tr|A0RP09|A0RP09_CAMFF Sodium/hydrogen exchanger family protein ...    33   9.2  
tr|B6U3H9|B6U3H9_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.2  
tr|Q5TQJ2|Q5TQJ2_ANOGA AGAP008482-PA (Fragment) OS=Anopheles gam...    33   9.2  
tr|B4L1F7|B4L1F7_DROMO GI15273 OS=Drosophila mojavensis GN=GI152...    33   9.2  

>tr|Q8I1S3|Q8I1S3_PLAF7 Putative uncharacterized protein PFD0795w
           OS=Plasmodium falciparum (isolate 3D7) GN=PFD0795w PE=4
           SV=1
          Length = 1267

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -2

Query: 351 KRHRKQQVAVVDVVANEKKPQKQVDGGSAAAGESICDGSGRKRKQKEASNE 199
           KR R+++   V+   NE KP++ ++GG A+   SI D  G K   KE   E
Sbjct: 526 KRKRRRKKKNVEGGENEGKPKQTIEGGEASDKCSINDQKGGKEYNKEGERE 576


>tr|Q54PH6|Q54PH6_DICDI Putative uncharacterized protein
            OS=Dictyostelium discoideum GN=DDB_0218617 PE=4 SV=1
          Length = 982

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 178  SLFLKMWLITGLF----LFSLTTTAITNRFTCSGTTTIYLLLRFLFVGHYINNSHLL 336
            SL L  WL+          SL+T+ ITN  T S T+ I+  LRF+F  + INN +L+
Sbjct: 865  SLALDKWLLLEALELTDCISLSTSTITNYIT-SETSHIHSHLRFIFFSNLINNDNLI 920


>tr|A4RE33|A4RE33_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_00789 PE=4 SV=1
          Length = 286

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -2

Query: 387 DNSSEDEDGFRVKRHRKQQVAVVDVVANEKKPQKQVDGGSAAAGESICDG----SGRKRK 220
           D ++ D+DG  +   +K+           KKP+K  DG  AA  E+  DG    + +K+K
Sbjct: 24  DGAAPDDDGLDLTLKKKK-----------KKPKKVEDGEEAAGDENAEDGGLDLTLKKKK 72

Query: 219 QKEASNEPHFKKK 181
           +K+  ++  F KK
Sbjct: 73  KKKPIDDDEFAKK 85


>tr|Q6PE29|Q6PE29_DANRE Zgc:65749 OS=Danio rerio GN=zgc:65749 PE=2
           SV=1
          Length = 320

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 384 NSSEDEDGFRVKRHRKQQVAVVDVVANEKKPQKQVDGGSAAAGESICDGSGRKRKQKEAS 205
           N +E+E+  R K+ +K +  + +   +EK  QKQ         E   DG   KR++K   
Sbjct: 164 NGTEEEEDQRKKKKKKNRKTLEEQNGHEKHTQKQ--KRKREQNEQNTDGKNNKRQKKSKQ 221

Query: 204 NEP 196
            EP
Sbjct: 222 EEP 224


>tr|A0RP09|A0RP09_CAMFF Sodium/hydrogen exchanger family protein
           OS=Campylobacter fetus subsp. fetus (strain 82-40)
           GN=CFF8240_0767 PE=4 SV=1
          Length = 539

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = +1

Query: 199 LITGLFLFSLTTTAITNRFTCSGTTTIYLLLRFLFVGHYINNSHLLFSVTFDTKAVLILT 378
           L+  + +FS  TT++++  T + T+ I LL    F+G Y+ N  L   +  +++ + I T
Sbjct: 160 LLLMIDIFSSKTTSVSDLVTTTLTSAIILLFLLYFIGKYLFNWMLYLVIKTNSQEIFITT 219


>tr|B6U3H9|B6U3H9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 263

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 11  LLGVCIHLVLFCYHSLMLWSLHLHVC 88
           LL +CI+  LFCY    LW  H  +C
Sbjct: 229 LLDICINYYLFCYFDFCLWIQHCCIC 254


>tr|Q5TQJ2|Q5TQJ2_ANOGA AGAP008482-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP008482 PE=4 SV=3
          Length = 4793

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = -2

Query: 384  NSSEDEDGFRVKRHRKQQVAVVDVVANEKKPQKQVDGGSAAAGESICDGSGRKRKQKEAS 205
            ++S D  G ++K+ RK            ++P+K   G +AAA + + + + +K  +K+ S
Sbjct: 1039 DTSTDASGKKIKKPRKP-----------REPKKPAKGAAAAAADGVKEPTPKKESKKKDS 1087

Query: 204  NEPHFKKK*VTLSS 163
             +   KKK    SS
Sbjct: 1088 KDSKKKKKKSVASS 1101


>tr|B4L1F7|B4L1F7_DROMO GI15273 OS=Drosophila mojavensis GN=GI15273
            PE=4 SV=1
          Length = 3747

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 390  QDNSSEDEDGFRVKRHRKQQVAVVDVVANEKKPQKQVDGGSAAAGESICDGSGRKRKQKE 211
            QD ++ D+D + V++ + Q        A   +   Q++G   AAG +     G++++ K 
Sbjct: 1691 QDTTNADDDDYAVQQSQSQSQPAAAPSAVSAEGAAQMEGNHYAAGGTAGVEGGKQQRSKS 1750

Query: 210  ASNEPHF 190
             S  P F
Sbjct: 1751 GSTRPMF 1757