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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917413
Clone id YMU001_000100_E06
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGCGATTCCTTGAGCACAAGTCTCTCTCAGTGGGGGCCCATTTGGTGGTTTGTTAGGGG
TTCTATGGTGGGTGGTTGTTGCTGGGTTCTGCATGTGTTACTATGTTGTCCTGTAGGCAA
GGGTTTCTTAAGGGTGGGTACCCAACTGTTTTCTCCTTGCCATGTGGTGTATGAGGGTCA
ACTTTAGGGCCTATTGTTGCATACAAGGCTTGGCGGCTACCTTGCTTTGTATGAAGCAAA
AAGATGCCATGTTCTACTCCGCAGGGTCCTAGAGATTTGGGATGGACCTGAATGTTTTCA
CATTGCATGGCTTCAGACTTGCTGGTGGTACTATGTACCTCTGTCGGGTATGGGGGATTT
AGGGGGGTCATGCAATTGTGGCAGGGTTGGTATGTTCTCTGGAAACCTGTGATGCTTCTA
CCATGACCTATGTAGATGTAAGGCTCACCTCCAT
■■Homology search results ■■ -
sp_hit_id Q2NJ60
Definition sp|Q2NJ60|SYA_AYWBP Alanyl-tRNA synthetase OS=Aster yellows witches'-broom phytoplasma (strain AYWB)
Align length 65
Score (bit) 32.7
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917413|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_E06.
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2NJ60|SYA_AYWBP Alanyl-tRNA synthetase OS=Aster yellows witc...    33   0.74 
sp|Q9P1Y5|K1543_HUMAN Uncharacterized protein KIAA1543 OS=Homo s...    32   1.7  
sp|P34268|FLII_CAEEL Protein flightless-1 homolog OS=Caenorhabdi...    31   2.2  
sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio r...    31   2.8  
sp|A2RRV3|PATL1_DANRE Protein PAT1 homolog 1 OS=Danio rerio GN=p...    31   2.8  
sp|Q924U5|TESK2_RAT Dual specificity testis-specific protein kin...    30   3.7  
sp|Q99PF6|GAB1_MESAU GRB2-associated-binding protein 1 OS=Mesocr...    30   3.7  
sp|Q8N697|S15A4_HUMAN Solute carrier family 15 member 4 OS=Homo ...    30   4.8  
sp|Q13480|GAB1_HUMAN GRB2-associated-binding protein 1 OS=Homo s...    30   4.8  
sp|B0YPR7|RK2_ANEMR 50S ribosomal protein L2, plastid OS=Aneura ...    30   6.3  
sp|Q6GPD0|RICS_XENLA Rho/Cdc42/Rac GTPase-activating protein RIC...    29   8.2  
sp|Q9QYY0|GAB1_MOUSE GRB2-associated-binding protein 1 OS=Mus mu...    29   8.2  

>sp|Q2NJ60|SYA_AYWBP Alanyl-tRNA synthetase OS=Aster yellows
           witches'-broom phytoplasma (strain AYWB) GN=alaS PE=3
           SV=1
          Length = 864

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -3

Query: 446 EPYIYIGHGRSITGFQRTYQPCH-NCMTPLNP---PYPTEVHSTTSKSEAMQCENIQVHP 279
           E +  + +    +G  R    C+ NC   LN    PY  E+H  T K++++Q +N+    
Sbjct: 651 EHFTILSYESISSGIYRIEAVCNKNCQESLNAKLAPYQNELHQLTQKAKSLQTQNLDFEI 710

Query: 278 KSLGP 264
           K   P
Sbjct: 711 KKFPP 715


>sp|Q9P1Y5|K1543_HUMAN Uncharacterized protein KIAA1543 OS=Homo
           sapiens GN=KIAA1543 PE=1 SV=2
          Length = 1249

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 27/96 (28%), Positives = 41/96 (42%)
 Frame = -3

Query: 368 TPLNPPYPTEVHSTTSKSEAMQCENIQVHPKSLGPCGVEHGIFLLHTKQGSRQALYATIG 189
           TP  PP   E     +  EA+Q  +    P+ L P G   G F LH+ +G  +   A+  
Sbjct: 445 TPTQPP--PEPGDLPTIEEALQIIH-SAEPRLL-PDGAADGSFYLHSPEGPSKPSLAS-- 498

Query: 188 PKVDPHTPHGKEKTVGYPPLRNPCLQDNIVTHAEPS 81
               P+ P G  K +   P + P    +  T ++PS
Sbjct: 499 ----PYLPEGTSKPLSDRPTKAPVYMPHPETPSKPS 530


>sp|P34268|FLII_CAEEL Protein flightless-1 homolog OS=Caenorhabditis
           elegans GN=fli-1 PE=2 SV=2
          Length = 1257

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -3

Query: 449 GEPYIYIGHGRSITGFQRTYQPCHNCMTPLNPPYPTEVHSTTSKSEAMQCENIQVHPKSL 270
           GE  +YI  GR+I+GF  T +P H     L   Y   V+ T     A++ E + +  +SL
Sbjct: 604 GEEIVYIEGGRTISGFYTTEKPAH-----LTRLYRAGVNGT-----AVEMEPVPLSVESL 653

Query: 269 GP 264
            P
Sbjct: 654 DP 655


>sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio
           rerio GN=tcf7l1a PE=2 SV=1
          Length = 560

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
 Frame = -3

Query: 410 TGFQRTYQPCHNCMTPLNPPYPTEVHSTTSKSEAMQCENIQVHPKSLGPCGVEHGIFLLH 231
           TG  RT  P    ++P  P  P  V         +  +  Q H  S+ P G  H    L 
Sbjct: 202 TGIPRTPHPSE--LSPYYPLSPGAVGQIPHPLGWLVPQQGQ-HMYSIPPGGFRHPYPALA 258

Query: 230 TKQGSRQALYATIGPKVDPHTPHGKEKT-VGYPPLRNPCLQD-------NIVTHAEPS 81
                   + +   P + PH PHG  +T + +P + +P ++        +  TH +PS
Sbjct: 259 MNASMSSLVSSRFSPHMVPHPPHGLHQTGIPHPAIVSPAIKQEPNGESPSNSTHGKPS 316


>sp|A2RRV3|PATL1_DANRE Protein PAT1 homolog 1 OS=Danio rerio
           GN=patl1 PE=1 SV=1
          Length = 765

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -3

Query: 353 PYPTEVHSTTSKSEAMQCENIQVHPKSLGPCGVEHGIFLLHTKQGSRQALYATIGPKVDP 174
           P+P  V+   S+ +  Q  N QV     GP        LL    G  +  +   GP++ P
Sbjct: 306 PFPAGVNPVLSQIQRAQLLNSQVGQFQRGPAPP-----LLQGGVGGFRPFFGQSGPRIGP 360

Query: 173 HTPHGKEKTVGYPPLRN 123
           H P      +G+ P+R+
Sbjct: 361 HGP-----PLGHAPIRH 372


>sp|Q924U5|TESK2_RAT Dual specificity testis-specific protein kinase
           2 OS=Rattus norvegicus GN=Tesk2 PE=2 SV=1
          Length = 570

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
 Frame = -3

Query: 356 PPYPTEVHSTTSKSEAMQCENIQ------VHPKSLGPC 261
           PP+ T   S TS  EAM C N Q        PK   PC
Sbjct: 496 PPFRTSALSATSAHEAMDCSNPQEENGFVPRPKGTSPC 533


>sp|Q99PF6|GAB1_MESAU GRB2-associated-binding protein 1
           OS=Mesocricetus auratus GN=GAB1 PE=2 SV=1
          Length = 694

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
 Frame = -3

Query: 353 PYPTEVHSTTSKSEAMQCENIQV---------HPKSLGPCGVEHGIFLLHTKQGSRQALY 201
           P P  VHSTTS S++   E   V          P   G   ++ G   +   +G +Q  Y
Sbjct: 568 PRPNSVHSTTSSSDSHDSEENYVPMNPNLSSEDPNLFGSNSLDGGSSSMIKPKGDKQVEY 627

Query: 200 ATIGPKVDPHTPHGKEKTVG 141
             +       TP  K+K  G
Sbjct: 628 LDLDLDSGKSTPPRKQKNSG 647


>sp|Q8N697|S15A4_HUMAN Solute carrier family 15 member 4 OS=Homo
           sapiens GN=SLC15A4 PE=2 SV=1
          Length = 577

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 275 SLGPCGVEHGIFLLHTKQGSRQALYATIGPKVDPHTPHGKEKTVGYPPLR 126
           ++  C + +  FLL   QG+   L+  I  K D H  H + +  G P  R
Sbjct: 526 NINGCYLNYYFFLLAAIQGATLLLFLIISVKYDHHRDHQRSRANGVPTSR 575


>sp|Q13480|GAB1_HUMAN GRB2-associated-binding protein 1 OS=Homo
           sapiens GN=GAB1 PE=1 SV=2
          Length = 694

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
 Frame = -3

Query: 353 PYPTEVHSTTSKSEAMQCENIQV---------HPKSLGPCGVEHGIFLLHTKQGSRQALY 201
           P P  VHSTTS S++   E   V          P   G   ++ G   +   +G +Q  Y
Sbjct: 568 PRPDSVHSTTSSSDSHDSEENYVPMNPNLSSEDPNLFGSNSLDGGSSPMIKPKGDKQVEY 627

Query: 200 ATIGPKVDPHTPHGKEKTVG 141
             +       TP  K+K+ G
Sbjct: 628 LDLDLDSGKSTPPRKQKSSG 647


>sp|B0YPR7|RK2_ANEMR 50S ribosomal protein L2, plastid OS=Aneura
           mirabilis GN=rpl2 PE=3 SV=1
          Length = 283

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 248 GIFLLHTKQGSRQALYATIGPKVDPHTPHGKEKTVGYPPLRNPCL 114
           GI     + G  + LY  I  + D     G+ KT+ Y P RN C+
Sbjct: 53  GIITSRHRGGGHRRLYRMIDFRRDKRDVSGEIKTIEYDPNRNTCI 97
tr_hit_id Q8X793
Definition tr|Q8X793|Q8X793_ECO57 Putative uncharacterized protein (Putative uncharacterized protein ECs4854) OS=Escherichia coli O157:H7
Align length 38
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917413|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_E06.
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8X793|Q8X793_ECO57 Putative uncharacterized protein (Putativ...    36   1.1  
tr|B6PA30|B6PA30_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|Q6AB29|Q6AB29_PROAC Conserved protein OS=Propionibacterium ac...    33   9.3  
tr|B2JEC6|B2JEC6_BURP8 Lysine exporter protein (LYSE/YGGA) OS=Bu...    33   9.3  

>tr|Q8X793|Q8X793_ECO57 Putative uncharacterized protein (Putative
           uncharacterized protein ECs4854) OS=Escherichia coli
           O157:H7 GN=ECs4854 PE=4 SV=1
          Length = 238

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +2

Query: 62  SMVGGCCWVLHVLLCCPVGKGFLRVGTQLFSPCHVVYE 175
           S   GCCWVL VLL   VG  F     +LF+P H  +E
Sbjct: 66  SFTRGCCWVLGVLLLSNVGNTF-----RLFTPWHYTFE 98


>tr|B6PA30|B6PA30_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_104528 PE=4 SV=1
          Length = 548

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -3

Query: 386 PCHNCMTPLNPPYPTEVHSTTSKSEAMQCENIQVHPKSLGPCGVEHGIFLLHTKQGSRQA 207
           P  +  TPL+ P P E+ S   K E  +  + +V P+S    G ++G  L       RQ 
Sbjct: 347 PVSDVNTPLSTPSPGELDSVVVKQEEQEFSHEEVRPQSEDSTGSQNG-DLRSEVSSLRQQ 405

Query: 206 LYATIGPKVDP 174
           +   IG ++ P
Sbjct: 406 ISDVIGEEIPP 416


>tr|Q6AB29|Q6AB29_PROAC Conserved protein OS=Propionibacterium acnes
           GN=PPA0279 PE=4 SV=1
          Length = 335

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
 Frame = -2

Query: 147 SWVPTLKKPLPTGQHSNT----------CRTQQQPPTIEPLTNH 46
           +W+PTL  P+ TG H NT           R+ Q+P  IE +  H
Sbjct: 149 AWLPTLTFPVRTGTHDNTAFGIGLCLDAARSLQRPEVIEAIVEH 192


>tr|B2JEC6|B2JEC6_BURP8 Lysine exporter protein (LYSE/YGGA)
           OS=Burkholderia phymatum (strain DSM 17167 / STM815)
           GN=Bphy_0613 PE=4 SV=1
          Length = 226

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 50  FVRGSMVGGCCWVLHVLLCCPVGKGFLRVGTQLFSPCHVV 169
           F+ G  +GG CW L   +C     G  R GT L   CHV+
Sbjct: 159 FLGGFFLGGLCWTL--FICGLASHGRKRAGTGLLRICHVL 196