BP917418 |
Clone id |
YMU001_000100_E11 |
Library |
YMU01 |
Length |
490 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000100_E11. |
Accession |
BP917418 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
GGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAGAAGCCATGGCTGCC GTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAACTGCCCCCGCTGCTTCTCTGAAG TCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCTATCCGCC CGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCCCTTGGGA CCTTCCGGCGATACCAAATTCAAGGGTAACCTGNATGCCTCTGGTCGCAAAGCTAAGGGA AAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGCCCTATC TATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTG GCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAAC ACCAGTGCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
118 |
Score (bit) |
129.0 |
E-value |
6.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917418|Adiantum capillus-veneris mRNA, clone: YMU001_000100_E11. (490 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 129 6e-30 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 128 1e-29 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 127 3e-29 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 125 1e-28 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 125 1e-28 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 121 1e-27 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 121 2e-27 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 31 3.5 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 5.9 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 7.6 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 7.8 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 7.8
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 129 bits (325), Expect = 6e-30 Identities = 66/118 (55%), Positives = 78/118 (66%) Frame = +1
Query: 136 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLXASGRKAKGKGVYQ 315 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + + ASGRK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 316 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSA 489 Y KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSA 135
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 128 bits (322), Expect = 1e-29 Identities = 66/116 (56%), Positives = 77/116 (66%) Frame = +1
Query: 142 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLXASGRKAKGKGVYQYT 321 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + + ASGRK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 322 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSA 489 KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSA Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSA 135
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 127 bits (319), Expect = 3e-29 Identities = 64/116 (55%), Positives = 78/116 (67%) Frame = +1
Query: 142 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLXASGRKAKGKGVYQYT 321 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + + ASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 322 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSA 489 KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT V+NTSA Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSA 133
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 125 bits (314), Expect = 1e-28 Identities = 65/118 (55%), Positives = 76/118 (64%) Frame = +1
Query: 136 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLXASGRKAKGKGVYQ 315 + +G+PSL+ + S S RI ASGVKKI T P G +G + + ASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 316 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSA 489 + KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSA 138
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 125 bits (313), Expect = 1e-28 Identities = 65/116 (56%), Positives = 75/116 (64%) Frame = +1
Query: 142 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLXASGRKAKGKGVYQYT 321 V+G+PSLS S+ S + ASGVKKI PLG G K + + +SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 322 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSA 489 KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVT VYNTSA Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSA 137
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 121 bits (304), Expect = 1e-27 Identities = 66/124 (53%), Positives = 74/124 (59%) Frame = +1
Query: 118 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLXASGRKAK 297 +S+ GV+ PS P SL I A KK+ T P GP G FK + ASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 298 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVY 477 GKGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT VY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 478 NTSA 489 +TSA Sbjct: 132 STSA 135
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 121 bits (303), Expect = 2e-27 Identities = 64/115 (55%), Positives = 73/115 (63%) Frame = +1
Query: 145 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLXASGRKAKGKGVYQYTK 324 +G+PSL+ + S +I ASGVKKI T P G +G + + ASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 325 KYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSA 489 KYGANVDGYSPIY EWS SGD Y G TGLAIWAVT VYNTSA Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSA 137
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 30.8 bits (68), Expect = 3.5 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +1
Query: 136 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLXASGRKA--K 297 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 298 GKGVYQYTKKYGANVDGYSPIYVPEEW 378 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
>sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplO PE=3 SV=1 Length = 146
Score = 30.0 bits (66), Expect = 5.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1
Query: 118 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTK 228 KSE SG+++ G SL KL+ ++ + AS + I K Sbjct: 103 KSEKSGIKILGTGSLDKKLTVKASKFSASAAEAIDAK 139
>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus GN=Tcf7l1 PE=1 SV=2 Length = 584
Score = 29.6 bits (65), Expect = 7.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -3
Query: 419 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 324 +P P LSPE+D +G +PS L+PY+ Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK29 |
Definition |
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
127 |
Score (bit) |
139.0 |
E-value |
7.0e-32 |
Report |
|