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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917423
Clone id YMU001_000100_F04
Library
Length 422
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCATCATCCAACAGCTCCAGCAGCAACGCGACGACAGCACCATCATCAACTACTACTTC
CAAGCCCAATAGCACCGCTGCATTCAATAGCAGCAACCTGCATTCTAGGGCGCGGCGCGG
ACCTATCGGATCTAACTGCTGCTGATAAGTGTTTTGCACACTTCATGGCTTTAGCTTCAA
CTTCAACATATTTTCGAATTGATCTTAGGCCTAATATCAATCATGGAGGGAGCTTTACTC
ATGACCACCACATCGTGGGATCAAATCCTGAACCTTCCCATGTACAATAGTCATGATCAC
GAGCAATGGTTCCCTGTGTACATTAGTCAAATTCACACACACACATACCAATCCACTTTA
TTGTTCCCTACGTCCATCAACTGAGGGCAGACGTAATCTTAATATATTTGACAAAAAGTC
TC
■■Homology search results ■■ -
sp_hit_id Q9UN88
Definition sp|Q9UN88|GBRT_HUMAN Gamma-aminobutyric acid receptor subunit theta OS=Homo sapiens
Align length 80
Score (bit) 33.9
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917423|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_F04.
         (422 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UN88|GBRT_HUMAN Gamma-aminobutyric acid receptor subunit th...    34   0.27 
sp|Q4P996|PRM1_USTMA Plasma membrane fusion protein PRM1 OS=Usti...    31   1.7  
sp|A1WKI1|SYP_VEREI Prolyl-tRNA synthetase OS=Verminephrobacter ...    29   6.6  
sp|Q01726|MSHR_HUMAN Melanocyte-stimulating hormone receptor OS=...    29   6.6  
sp|Q8CGC7|SYEP_MOUSE Bifunctional aminoacyl-tRNA synthetase OS=M...    29   8.6  

>sp|Q9UN88|GBRT_HUMAN Gamma-aminobutyric acid receptor subunit theta
           OS=Homo sapiens GN=GABRQ PE=2 SV=2
          Length = 632

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = +3

Query: 27  TRRQHHHQLLLPSPIAPLHSIAATCILGRGADLSDLTAADKCFAH-----FMALASTSTY 191
           T      QL     ++PL S++    L  G  LSDL +  +   H     F    +  + 
Sbjct: 418 TSTSEQAQLATSESLSPLTSLSGQAPLATGESLSDLPSTSEQARHSYGVRFNGFQADDSI 477

Query: 192 FRIDLRPNIN-HGGSFTHDH 248
           F  ++R  +  HG   THDH
Sbjct: 478 FPTEIRNRVEAHGHGVTHDH 497


>sp|Q4P996|PRM1_USTMA Plasma membrane fusion protein PRM1
           OS=Ustilago maydis GN=PRM1 PE=3 SV=1
          Length = 983

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +1

Query: 163 SWL*LQLQH------IFELILGLISIMEGALLMTTTSWDQILNLPMYNSHDHEQWFPVYI 324
           +WL   L H      +F  +LGLIS++  A+L+ + S   + ++    +H         +
Sbjct: 429 AWLLSFLMHPASLACLFTGVLGLISVLMQAILVHSLSHHYVSSIDTSLAHLSSD----IV 484

Query: 325 SQIHTHTYQSTLLFPTSIN 381
           + +H HT  +++ F TS N
Sbjct: 485 NLVHDHTRNASVAFSTSAN 503


>sp|A1WKI1|SYP_VEREI Prolyl-tRNA synthetase OS=Verminephrobacter
           eiseniae (strain EF01-2) GN=proS PE=3 SV=1
          Length = 581

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 18  PAATRRQHHHQ--LLLPSPIAPLHSIAATCILGRGADLSDLTAADKCFAHFMA 170
           PAA   Q+H    ++ P  IAP    A  C +G     +   AADK +A F+A
Sbjct: 461 PAAAIEQNHDARGIIWPDAIAPF--TAVICPIGMERSAAVQAAADKLYADFLA 511


>sp|Q01726|MSHR_HUMAN Melanocyte-stimulating hormone receptor
           OS=Homo sapiens GN=MC1R PE=1 SV=2
          Length = 317

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 199 LILGLISIMEGALLMTTTSWDQILNLPMY 285
           L LGL+S++E AL++ T + ++ L+ PMY
Sbjct: 46  LSLGLVSLVENALVVATIAKNRNLHSPMY 74


>sp|Q8CGC7|SYEP_MOUSE Bifunctional aminoacyl-tRNA synthetase OS=Mus
            musculus GN=Eprs PE=2 SV=3
          Length = 1512

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 51   LLLPSPIAPLHSIAATCILGRGADLSDLTAA-DKCFAHFMALASTSTYFRIDLRPNINHG 227
            L+LP  +A +  +   C +       D  A   KC  +   L   +   R+DLR N + G
Sbjct: 1293 LVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPG 1352

Query: 228  GSFTH 242
              F H
Sbjct: 1353 WKFNH 1357
tr_hit_id Q688J7
Definition tr|Q688J7|Q688J7_ORYSJ Putative uncharacterized protein P0579A05.12 OS=Oryza sativa subsp. japonica
Align length 87
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917423|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_F04.
         (422 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q688J7|Q688J7_ORYSJ Putative uncharacterized protein P0579A05...    34   4.1  
tr|Q60DW6|Q60DW6_ORYSJ Putative no apical meristem (NAM) protein...    34   4.1  
tr|Q0DI41|Q0DI41_ORYSJ Os05g0418800 protein OS=Oryza sativa subs...    34   4.1  
tr|B7FY96|B7FY96_PHATR Predicted protein OS=Phaeodactylum tricor...    34   4.1  
tr|A2Y4R5|A2Y4R5_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|A6NFN1|A6NFN1_HUMAN Putative uncharacterized protein GABRQ OS...    34   4.1  
tr|Q8L4N1|Q8L4N1_ARATH Putative uncharacterized protein (Putativ...    33   5.4  
tr|Q682U9|Q682U9_ARATH Putative uncharacterized protein At4g2732...    33   5.4  
tr|Q680I4|Q680I4_ARATH Putative uncharacterized protein At4g2732...    33   5.4  
tr|Q67YW3|Q67YW3_ARATH Putative uncharacterized protein At4g2732...    33   5.4  
tr|Q67XK0|Q67XK0_ARATH Putative uncharacterized protein At4g2732...    33   5.4  
tr|Q67XF9|Q67XF9_ARATH Putative uncharacterized protein At4g2732...    33   5.4  
tr|O81835|O81835_ARATH Putative uncharacterized protein AT4g2732...    33   5.4  
tr|Q6IKD7|Q6IKD7_DROME HDC12763 OS=Drosophila melanogaster GN=HD...    33   5.4  

>tr|Q688J7|Q688J7_ORYSJ Putative uncharacterized protein P0579A05.12
           OS=Oryza sativa subsp. japonica GN=P0579A05.12 PE=4 SV=1
          Length = 240

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +3

Query: 15  APAATRRQHHHQLLL-PSPIAPLHSIAATCILGRGADLSDLTAADKCFAHFMALASTSTY 191
           A A TR  +  QLL+ P P  P  + A T       + + + AA   ++   A  S+ST+
Sbjct: 100 ASATTRNSNASQLLMPPPPPRPPCAAAYTSAAAAPTESAAVLAAASTYSLLAAAGSSSTH 159

Query: 192 F--RIDLRPNINHGGSFTHDHHIVGSN 266
                 L    +HGG++ ++H + GS+
Sbjct: 160 IDELSTLLAGHSHGGAYGNNHIVAGSH 186


>tr|Q60DW6|Q60DW6_ORYSJ Putative no apical meristem (NAM) protein
           OS=Oryza sativa subsp. japonica GN=P0426G01.5 PE=4 SV=1
          Length = 476

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +3

Query: 15  APAATRRQHHHQLLL-PSPIAPLHSIAATCILGRGADLSDLTAADKCFAHFMALASTSTY 191
           A A TR  +  QLL+ P P  P  + A T       + + + AA   ++   A  S+ST+
Sbjct: 336 ASATTRNSNASQLLMPPPPPRPPCAAAYTSAAAAPTESAAVLAAASTYSLLAAAGSSSTH 395

Query: 192 F--RIDLRPNINHGGSFTHDHHIVGSN 266
                 L    +HGG++ ++H + GS+
Sbjct: 396 IDELSTLLAGHSHGGAYGNNHIVAGSH 422


>tr|Q0DI41|Q0DI41_ORYSJ Os05g0418800 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0418800 PE=4 SV=1
          Length = 417

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +3

Query: 15  APAATRRQHHHQLLL-PSPIAPLHSIAATCILGRGADLSDLTAADKCFAHFMALASTSTY 191
           A A TR  +  QLL+ P P  P  + A T       + + + AA   ++   A  S+ST+
Sbjct: 277 ASATTRNSNASQLLMPPPPPRPPCAAAYTSAAAAPTESAAVLAAASTYSLLAAAGSSSTH 336

Query: 192 F--RIDLRPNINHGGSFTHDHHIVGSN 266
                 L    +HGG++ ++H + GS+
Sbjct: 337 IDELSTLLAGHSHGGAYGNNHIVAGSH 363


>tr|B7FY96|B7FY96_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_45610 PE=4 SV=1
          Length = 563

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/66 (36%), Positives = 34/66 (51%)
 Frame = +3

Query: 66  PIAPLHSIAATCILGRGADLSDLTAADKCFAHFMALASTSTYFRIDLRPNINHGGSFTHD 245
           P AP+++I    +  +   L D  A+ K  A F  LAS S     D+  ++  G SFTHD
Sbjct: 395 PKAPVYNICNDSVAWKS--LIDSMASMKVSADFELLASISNPNHFDVALDMGKG-SFTHD 451

Query: 246 HHIVGS 263
           H  VG+
Sbjct: 452 HAFVGT 457


>tr|A2Y4R5|A2Y4R5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19993 PE=4 SV=1
          Length = 414

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +3

Query: 15  APAATRRQHHHQLLL-PSPIAPLHSIAATCILGRGADLSDLTAADKCFAHFMALASTSTY 191
           A A TR  +  QLL+ P P  P  + A T       + + + AA   ++   A  S+ST+
Sbjct: 274 ASATTRNSNASQLLMPPPPPRPPCAAAYTSAAAAPTESAAVLAAASTYSLLAAAGSSSTH 333

Query: 192 F--RIDLRPNINHGGSFTHDHHIVGSN 266
                 L    +HGG++ ++H + GS+
Sbjct: 334 IDELSTLLAGHSHGGAYGNNHIVAGSH 360


>tr|A6NFN1|A6NFN1_HUMAN Putative uncharacterized protein GABRQ
           OS=Homo sapiens GN=GABRQ PE=3 SV=1
          Length = 622

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = +3

Query: 27  TRRQHHHQLLLPSPIAPLHSIAATCILGRGADLSDLTAADKCFAH-----FMALASTSTY 191
           T      QL     ++PL S++    L  G  LSDL +  +   H     F    +  + 
Sbjct: 408 TSTSEQAQLATSESLSPLTSLSGQAPLATGESLSDLPSTSEQARHSYGVRFNGFQADDSI 467

Query: 192 FRIDLRPNIN-HGGSFTHDH 248
           F  ++R  +  HG   THDH
Sbjct: 468 FPTEIRNRVEAHGHGVTHDH 487


>tr|Q8L4N1|Q8L4N1_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein At4g27320) (At4g27320/M4I22_130)
           OS=Arabidopsis thaliana GN=At4g27320 PE=2 SV=1
          Length = 260

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 3   HHPTAPAATRRQHHHQLLLPSPIAPLHSIAATCILGRGADLSDLTA 140
           HHP++P   R  HHH    PS   P  +  A   +G   DLS+ +A
Sbjct: 16  HHPSSP---RHSHHHSSSTPSAATPTPTAGARRKIGVAVDLSEESA 58


>tr|Q682U9|Q682U9_ARATH Putative uncharacterized protein At4g27320
           OS=Arabidopsis thaliana GN=At4g27320 PE=2 SV=1
          Length = 260

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 3   HHPTAPAATRRQHHHQLLLPSPIAPLHSIAATCILGRGADLSDLTA 140
           HHP++P   R  HHH    PS   P  +  A   +G   DLS+ +A
Sbjct: 16  HHPSSP---RHSHHHSSSTPSAATPTPTAGARRKIGVAVDLSEESA 58


>tr|Q680I4|Q680I4_ARATH Putative uncharacterized protein At4g27320
           OS=Arabidopsis thaliana GN=At4g27320 PE=2 SV=1
          Length = 260

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 3   HHPTAPAATRRQHHHQLLLPSPIAPLHSIAATCILGRGADLSDLTA 140
           HHP++P   R  HHH    PS   P  +  A   +G   DLS+ +A
Sbjct: 16  HHPSSP---RHSHHHSSSTPSAATPTPTAGARRKIGVAVDLSEESA 58


>tr|Q67YW3|Q67YW3_ARATH Putative uncharacterized protein At4g27320
           OS=Arabidopsis thaliana GN=At4g27320 PE=2 SV=1
          Length = 260

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 3   HHPTAPAATRRQHHHQLLLPSPIAPLHSIAATCILGRGADLSDLTA 140
           HHP++P   R  HHH    PS   P  +  A   +G   DLS+ +A
Sbjct: 16  HHPSSP---RHSHHHSSSTPSAATPTPTAGARRKIGVAVDLSEESA 58