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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917425
Clone id YMU001_000100_F06
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAAGAATTCGCGGGCGCAGGAATTTGTTGTTTTTTTGTGGAAGAAAAATCACTCTCA
TTAGATAACTCACTAACTAGAAGGTGCTAATTACAAGAAAATAACTTCATATTTCGCCAA
GGATCTGAAAAGGAACAAAAGGAGTCTATCTGGCCATGTTAGAGGGATACCCGGGGCTCA
CGAGTCTGAGGTAGTTGAACGACTAACAGAGCTTTCATGACATATTTTACACTGAACATC
TTACAGTTGCTGTACCATTACTGCCTAAACTGCCTCTTTAAGTGCAAAACATGCTTCTGT
CTCTACATCACCATCAAATGCTCATTCTACAGCATCAGTGTATCGGCACGTGAGGCAATC
AATGTTGTGACCATGCTCTTTTCTCATTTTGTGCTCCATGGGCCATGGCCACCCGCGTTG
CACGTGACCATAATTGCATGTCGCAAAGTACATTGTAAGTCAAGCTTGACCTGCACCTGC
TTCGTCCTCGGAAGTATCCCCATCTTTCACTTCCTGCACACCTTTC
■■Homology search results ■■ -
sp_hit_id Q86XX4
Definition sp|Q86XX4|FRAS1_HUMAN Extracellular matrix protein FRAS1 OS=Homo sapiens
Align length 42
Score (bit) 30.0
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917425|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_F06.
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86XX4|FRAS1_HUMAN Extracellular matrix protein FRAS1 OS=Homo...    30   6.5  

>sp|Q86XX4|FRAS1_HUMAN Extracellular matrix protein FRAS1 OS=Homo
           sapiens GN=FRAS1 PE=2 SV=1
          Length = 4007

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 277 VSTSPSNAHSTASVYRHVRQSML*PCSFLILCSMGHGHPRCT 402
           V  +P + H    ++ H  +    PCS   +CS  HG  RCT
Sbjct: 88  VLRTPGSCHHEKKIHEHGTEWASSPCS---VCSCNHGEVRCT 126
tr_hit_id Q93560
Definition tr|Q93560|Q93560_CAEEL Putative uncharacterized protein OS=Caenorhabditis elegans
Align length 53
Score (bit) 34.7
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917425|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_F06.
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q93560|Q93560_CAEEL Putative uncharacterized protein OS=Caeno...    35   2.6  
tr|B7WN98|B7WN98_CAEEL Putative uncharacterized protein OS=Caeno...    35   2.6  
tr|B4S2B3|B4S2B3_ALTMD Na+/H+ antiporter NhaC OS=Alteromonas mac...    34   3.4  
tr|A8A991|A8A991_IGNH4 Putative uncharacterized protein OS=Ignic...    34   4.5  
tr|Q22HI5|Q22HI5_TETTH EGF-like domain containing protein OS=Tet...    33   5.8  
tr|Q24FA2|Q24FA2_TETTH Putative uncharacterized protein OS=Tetra...    33   7.6  
tr|Q4E556|Q4E556_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.9  
tr|Q4DWK2|Q4DWK2_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.9  

>tr|Q93560|Q93560_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=blmp-1 PE=2 SV=1
          Length = 817

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +3

Query: 3   ICCFFVEEKSLSLDNSLTRRC*LQENNFIFRQGSEKEQKESIWPC*RDTRGSR 161
           +C F V +KS+SL N     C L  N  I +  S+  +K SIW      RG R
Sbjct: 79  LCIFHVPDKSVSLPNPKRAECTLPMN-LILKSSSKNRKKSSIWSSDHIPRGVR 130


>tr|B7WN98|B7WN98_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=F25D7.3B PE=4 SV=1
          Length = 801

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +3

Query: 3   ICCFFVEEKSLSLDNSLTRRC*LQENNFIFRQGSEKEQKESIWPC*RDTRGSR 161
           +C F V +KS+SL N     C L  N  I +  S+  +K SIW      RG R
Sbjct: 79  LCIFHVPDKSVSLPNPKRAECTLPMN-LILKSSSKNRKKSSIWSSDHIPRGVR 130


>tr|B4S2B3|B4S2B3_ALTMD Na+/H+ antiporter NhaC OS=Alteromonas
           macleodii (strain DSM 17117 / Deep ecotype)
           GN=MADE_00082 PE=4 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
 Frame = +3

Query: 177 TTNRAFMTYFTLNILQLLYHYCLNCLFKCKTCFCLYITIKCSFYSISVSAREAINVVTML 356
           TTN A M+  T N+ + +Y      L        +++ I  S+ S S++A +   +   L
Sbjct: 174 TTNLAAMSAGT-NLYRHMYAMLFTTLPSFLLALVIFLVIGFSYASESLNAGQVFEIKAAL 232

Query: 357 FSHFVLHGPWP---PALHVTIIACRKVHCKSSLTCTCFVLGSIPIFH 488
            +H+ L  P+    P + +T+++ +KV  + +++C+  +   I IF+
Sbjct: 233 ATHYNL-APYITLLPLVLLTVLSIKKVPAEVTMSCSILLAVIIAIFY 278


>tr|A8A991|A8A991_IGNH4 Putative uncharacterized protein
           OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 /
           JCM 14125) GN=Igni_0310 PE=4 SV=1
          Length = 120

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 383 WPMEHKMRKEHGHNIDCLTCRYTDAVE*AFDGDVETEACFALKEAV 246
           +P  H   + HGH +DC T +   +VE     D  +EA + +K+A+
Sbjct: 56  FPTPHTFHEFHGHLLDCETVKVEASVEGEESSDAVSEALYLIKKAL 101


>tr|Q22HI5|Q22HI5_TETTH EGF-like domain containing protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00637180 PE=4
           SV=1
          Length = 1853

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 240 CLNCLFKCKTCFCLYITIKCSFYSISVSAREAINVVTMLFSHFVLHGPWPPALHVTII-A 416
           CL C+F C+TC    + + C+ Y    +    +   T +F+    +GP         + A
Sbjct: 417 CLPCVFPCQTCLSASVCLTCATY----TPNGQVQGQTYIFAQITYNGPQGTVFQQNCVPA 472

Query: 417 CRKVHCKSSLTCTCFV 464
           C K   ++S   +C V
Sbjct: 473 CPKGFYQNSKNNSCQV 488


>tr|Q24FA2|Q24FA2_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_01008720 PE=4
            SV=2
          Length = 1909

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 228  LYHYCLNCLFKCKTCFCLYIT---IKCSFYSISVSAREAINV 344
            LY+ C+ C   CK C   Y+    IK  +Y +SV  R+ +N+
Sbjct: 1087 LYNQCVQCNSYCKQCELGYLNNQGIKVYYYQLSVQQRQYVNI 1128


>tr|Q4E556|Q4E556_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053510359.150 PE=4 SV=1
          Length = 2034

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 246  NCLFKCKTCFCLYITIKCSFYSISVSAREAINVVTMLF 359
            N L +C     L +  KCSFYS +V AR  ++V  M F
Sbjct: 891  NSLRQCAQHLLLVLVQKCSFYSATVFARAVLHVAAMSF 928


>tr|Q4DWK2|Q4DWK2_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506755.140 PE=4 SV=1
          Length = 1989

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 246 NCLFKCKTCFCLYITIKCSFYSISVSAREAINVVTMLF 359
           N L +C     L +  KCSFYS +V AR  ++V  M F
Sbjct: 845 NSLRQCAQHLLLVLVQKCSFYSATVFARAVLHVAAMSF 882