BP917430 |
Clone id |
YMU001_000100_F12 |
Library |
YMU01 |
Length |
462 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000100_F12. |
Accession |
BP917430 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL850Contig1 |
Sequence |
AGGCACGAGAGCGTGGCGTGTTTTGGAGCAACGCTCTCCTGCTCTTACGTCGAACAGACA ATTAGCTCGAAGAACGCAAGAAGCTACATAAAGTAGGAGAACATCAGTTATGAGTGGAGA TGAAGCGTATTACATTCAAAAACGCAAGTACTATCGGAAAACTCTCATGGCAGCAGAGAA GCAGGGAGAGGAGTCCATTTGAAGGAAAGGAAATGGGTCAAGCACAGACAATCTGAAACA GAGAGTAGCGTCCATCTGAAAGGAAAGAAAATGGATCGAGTTAAGAAAGCTTGAAACGCA CACACAGAAAGAGAGCTGGACAAATGGGTGGCGAAGAAGAATCATCTGCTATTGTTGCAG TGGCCGATGAGAGAGCCCCTCCTATACCACAGCCTGCCATTGACCCTTCTGTGCAGCAGC GGTGGAACGAGCTTGAAACTGTTCACCTTATTGCTGCCTATC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8L6J1 |
Definition |
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum |
Align length |
73 |
Score (bit) |
33.9 |
E-value |
0.35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917430|Adiantum capillus-veneris mRNA, clone: YMU001_000100_F12. (462 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas... 34 0.35 sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast... 33 0.45 sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas... 33 0.45 sp|Q9Z0U5|ADO_RAT Aldehyde oxidase OS=Rattus norvegicus GN=Aox1 ... 33 0.79 sp|O54754|ADO_MOUSE Aldehyde oxidase OS=Mus musculus GN=Aox1 PE=... 32 1.0 sp|Q8CHG7|RPGF2_MOUSE Rap guanine nucleotide exchange factor 2 (... 32 1.7 sp|Q5FB27|ADO_MACFA Aldehyde oxidase OS=Macaca fascicularis GN=A... 31 2.3 sp|Q06278|ADO_HUMAN Aldehyde oxidase OS=Homo sapiens GN=AOX1 PE=... 31 2.3 sp|P81718|PTN6_RAT Tyrosine-protein phosphatase non-receptor typ... 31 3.0 sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis... 30 3.8 sp|Q5ZIG2|SLU7_CHICK Pre-mRNA-splicing factor SLU7 OS=Gallus gal... 30 3.9 sp|P80456|ADO_RABIT Aldehyde oxidase OS=Oryctolagus cuniculus GN... 30 3.9 sp|P48034|ADO_BOVIN Aldehyde oxidase OS=Bos taurus GN=AOX1 PE=1 ... 30 5.1 sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cunicul... 30 6.5 sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cunicul... 30 6.5 sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa GN=RYR1 PE... 30 6.5 sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR... 30 6.5 sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis... 30 6.5 sp|Q609C0|IF2_METCA Translation initiation factor IF-2 OS=Methyl... 30 6.5 sp|P22697|CYS3_NEUCR Regulatory protein cys-3 OS=Neurospora cras... 30 6.5 sp|Q751P0|PXR1_ASHGO Protein PXR1 OS=Ashbya gossypii GN=PXR1 PE=... 30 6.7 sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR... 29 8.5 sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR... 29 8.5 sp|Q9Y4G8|RPGF2_HUMAN Rap guanine nucleotide exchange factor 2 O... 29 8.5 sp|B0BNL4|HRG1_RAT Heme transporter HRG1 OS=Rattus norvegicus GN... 29 8.5 sp|P29351|PTN6_MOUSE Tyrosine-protein phosphatase non-receptor t... 29 8.7
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2 Length = 977
Score = 33.9 bits (76), Expect = 0.35 Identities = 20/73 (27%), Positives = 37/73 (50%) Frame = +2
Query: 131 YIQKRKYYRKTLMAAEKQGEESI*RKGNGSSTDNLKQRVASI*KERKWIELRKLETHTQK 310 +++K K +K + A+ Q + S T L++RV S+ K + +E+RKL + Sbjct: 267 FLEKTKKLQKHMTGAQSQEDMS-------KETMILRKRVKSLIKRNRVVEVRKLMKSEEP 319
Query: 311 ESWTNGWRRRIIC 349 ESW + ++ C Sbjct: 320 ESWGRDTQAKLGC 332
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1 Length = 977
Score = 33.5 bits (75), Expect = 0.45 Identities = 20/73 (27%), Positives = 37/73 (50%) Frame = +2
Query: 131 YIQKRKYYRKTLMAAEKQGEESI*RKGNGSSTDNLKQRVASI*KERKWIELRKLETHTQK 310 +++K K +K + A+ Q + S T L++RV S+ K + +E+RKL + Sbjct: 268 FLEKTKKLQKHMTGAQSQEDMS-------RETMILRKRVKSLIKRNRVVEVRKLMKSEEP 320
Query: 311 ESWTNGWRRRIIC 349 ESW + ++ C Sbjct: 321 ESWGRDTQAKLGC 333
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1 Length = 977
Score = 33.5 bits (75), Expect = 0.45 Identities = 20/73 (27%), Positives = 37/73 (50%) Frame = +2
Query: 131 YIQKRKYYRKTLMAAEKQGEESI*RKGNGSSTDNLKQRVASI*KERKWIELRKLETHTQK 310 +++K K +K + A+ Q + S T L++RV S+ K + +E+RKL + Sbjct: 268 FLEKTKKLQKHMTGAQSQEDMS-------RETMILRKRVKSLIKRNRVVEVRKLMKSEEP 320
Query: 311 ESWTNGWRRRIIC 349 ESW + ++ C Sbjct: 321 ESWGRDTQAKLGC 333
>sp|Q9Z0U5|ADO_RAT Aldehyde oxidase OS=Rattus norvegicus GN=Aox1 PE=2 SV=1 Length = 1333
Score = 32.7 bits (73), Expect = 0.79 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +1
Query: 163 SHGSREAGRGVHLKERKWVKHRQSETESSVHLKGKKMDRV 282 SHG E G+GVH K + V SSVHL+G + V Sbjct: 1036 SHGGIEMGQGVHTKMIQVVSRELKMPMSSVHLRGTSTETV 1075
>sp|O54754|ADO_MOUSE Aldehyde oxidase OS=Mus musculus GN=Aox1 PE=2 SV=2 Length = 1333
Score = 32.3 bits (72), Expect = 1.0 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +1
Query: 163 SHGSREAGRGVHLKERKWVKHRQSETESSVHLKGKKMDRV 282 SHG E G+GVH K + V SSVHL+G + V Sbjct: 1036 SHGGIEMGQGVHTKMIQVVSRELRMPMSSVHLRGTSTETV 1075
>sp|Q8CHG7|RPGF2_MOUSE Rap guanine nucleotide exchange factor 2 (Fragment) OS=Mus musculus GN=Rapgef2 PE=1 SV=1 Length = 1138
Score = 31.6 bits (70), Expect = 1.7 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = +3
Query: 120 MKRITFKNASTIGKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKR 299 M ++ F + ST K + Q +SRE + QAQ+ R S G E Sbjct: 936 MDQMMFSDHST--KYNRQNQSRE-------SLEQAQS---RASWASSTGYWGEDSEGDTG 983
Query: 300 THRKRAGQ-MGGEEESSAIVAVADERAPPIPQPA 398 T ++R G+ + E ESS++V V E A P+P PA Sbjct: 984 TIKRRGGKDVSAEAESSSMVPVTTEEAKPVPMPA 1017
>sp|Q5FB27|ADO_MACFA Aldehyde oxidase OS=Macaca fascicularis GN=AOX1 PE=2 SV=1 Length = 1338
Score = 31.2 bits (69), Expect = 2.3 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +1
Query: 163 SHGSREAGRGVHLKERKWVKHRQSETESSVHLKGKKMDRVKKA 291 +HG E G+GVH K + V S+VHL+G + V A Sbjct: 1041 THGGIEMGQGVHTKMIQVVSRELGMPISNVHLRGTSTETVPNA 1083
>sp|Q06278|ADO_HUMAN Aldehyde oxidase OS=Homo sapiens GN=AOX1 PE=2 SV=2 Length = 1338
Score = 31.2 bits (69), Expect = 2.3 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +1
Query: 163 SHGSREAGRGVHLKERKWVKHRQSETESSVHLKGKKMDRVKKA 291 +HG E G+GVH K + V S+VHL+G + V A Sbjct: 1041 THGGIEMGQGVHTKMIQVVSRELRMPMSNVHLRGTSTETVPNA 1083
>sp|P81718|PTN6_RAT Tyrosine-protein phosphatase non-receptor type 6 OS=Rattus norvegicus GN=Ptpn6 PE=1 SV=1 Length = 613
Score = 30.8 bits (68), Expect = 3.0 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = +1
Query: 187 RGVHLKERKWVKHRQSETESSVHLKGKKMDRVKKA*NAHTERELDKWVAKKNHLLL---- 354 R H K + + E +VH K KK ++VKK +A ++E +K K+N L Sbjct: 548 RSAHAKASRTSSKHKEEVYENVHSKNKKEEKVKKQRSA--DKEKNKGSLKRNISLTPCRG 605
Query: 355 LQWPMRE 375 L+W R+ Sbjct: 606 LRWADRD 612
>sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1 Length = 214
Score = 30.4 bits (67), Expect = 3.8 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%) Frame = +3
Query: 18 VFWSNALLLLRRTDN*LEERKKLHKVGEHQL*VEMKRITFKNASTIGK---LSWQQRSRE 188 V W + +LRR E KK+ K H + + +K FKN + + S +++RE Sbjct: 93 VLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKARE 152
Query: 189 RSPFEGKEMGQAQTI*NRE*RPSERKE 269 ++ + E +A+ +RE + + R+E Sbjct: 153 KTLSDQFEAKRAKNKASRERKHARREE 179
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7TGX1 |
Definition |
tr|A7TGX1|A7TGX1_VANPO Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) |
Align length |
105 |
Score (bit) |
34.7 |
E-value |
2.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917430|Adiantum capillus-veneris mRNA, clone: YMU001_000100_F12. (462 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7TGX1|A7TGX1_VANPO Putative uncharacterized protein OS=Vande... 35 2.4 tr|B3L8G1|B3L8G1_PLAKH Chloroquine resistance marker protein, pu... 34 4.1 tr|A7M0F3|A7M0F3_BACOV Sensor protein OS=Bacteroides ovatus ATCC... 34 4.1 tr|B5SMG9|B5SMG9_RALSO Ribonuclease e (Rnase e) protein OS=Ralst... 33 5.4 tr|A3RWT3|A3RWT3_RALSO Ribonuclease E OS=Ralstonia solanacearum ... 33 5.4 tr|B4KAA2|B4KAA2_DROMO GI23239 OS=Drosophila mojavensis GN=GI232... 33 5.4 tr|B4H3K6|B4H3K6_DROPE GL15194 OS=Drosophila persimilis GN=GL151... 33 5.4 tr|B1BU12|B1BU12_CLOPE Resolvase/recombinase OS=Clostridium perf... 33 7.0 tr|Q9ZSW4|Q9ZSW4_CITSI Putative ethylene receptor OS=Citrus sine... 33 7.0 tr|B7ZQ92|B7ZQ92_XENLA Putative uncharacterized protein OS=Xenop... 33 9.2 tr|Q8K8F9|Q8K8F9_STRP3 Putative uncharacterized protein (Putativ... 33 9.2 tr|B6WPH1|B6WPH1_9BACE Putative uncharacterized protein OS=Bacte... 33 9.2
>tr|A7TGX1|A7TGX1_VANPO Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_1032p15 PE=4 SV=1 Length = 846
Score = 34.7 bits (78), Expect = 2.4 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 1/105 (0%) Frame = +1
Query: 52 EQTISSKNARSYIK*ENISYEWR*SVLHSKTQVLSENSHGSREAGRGVHLKERKWVKHRQ 231 ++ I+ K A+ Y++ NI + L +K + +G ++ +HL E W Q Sbjct: 451 DRFINCKTAKYYLRANNIEKAVEVASLFTKND---DAVNGVKD----LHLVEASWFIIEQ 503
Query: 232 SETESSVHLKGKK-MDRVKKA*NAHTERELDKWVAKKNHLLLLQW 363 +E + +H+ KK + ++ + A T+ E+ + + K+ L L+W Sbjct: 504 AEAYNRLHIDSKKKLSELRASLEAATDEEVSETDSSKSELKELEW 548
>tr|B3L8G1|B3L8G1_PLAKH Chloroquine resistance marker protein, putative OS=Plasmodium knowlesi (strain H) GN=PKH_121070 PE=4 SV=1 Length = 7147
Score = 33.9 bits (76), Expect = 4.1 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = +1
Query: 232 SETESSVHLKGKKMDRVKKA*NAHTERELDKWVAK----KNHLLLLQWPMREP 378 SE+ + LKGKK + +K N + R+ DK++ KNHLL + P++ P Sbjct: 426 SESLENPVLKGKKNEMIKLKRNKNVNRKSDKFIPHDKEGKNHLLNIHSPVKHP 478
>tr|A7M0F3|A7M0F3_BACOV Sensor protein OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_03582 PE=4 SV=1 Length = 1459
Score = 33.9 bits (76), Expect = 4.1 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = +2
Query: 221 STDNLKQRVASI*KERKWIE---LRKLETHTQKESWTNGW 331 S+ LK R+ S+ ++RK ++ L KL HTQ+E NGW Sbjct: 1300 SSTYLKTRILSLLRQRKQLQDLYLSKLSEHTQEEDHINGW 1339
>tr|B5SMG9|B5SMG9_RALSO Ribonuclease e (Rnase e) protein OS=Ralstonia solanacearum IPO1609 GN=rne PE=4 SV=1 Length = 1018
Score = 33.5 bits (75), Expect = 5.4 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Frame = +3
Query: 156 GKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHRKRAGQMGGE 335 G+ Q RER+P EG+E G+ +RE R S G R R+R Q E Sbjct: 704 GRRERSQERRERAPREGREGGRE----SREGRESREPREG-------RDSRERDAQQAKE 752
Query: 336 EESSAI-VAVAD----ERAPPIPQPAIDPSV 413 S+A AVAD A +PQ +D ++ Sbjct: 753 AASAAAPAAVADLIDPTAAAQVPQALVDATM 783
>tr|A3RWT3|A3RWT3_RALSO Ribonuclease E OS=Ralstonia solanacearum UW551 GN=RRSL_01178 PE=4 SV=1 Length = 1018
Score = 33.5 bits (75), Expect = 5.4 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Frame = +3
Query: 156 GKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHRKRAGQMGGE 335 G+ Q RER+P EG+E G+ +RE R S G R R+R Q E Sbjct: 704 GRRERSQERRERAPREGREGGRE----SREGRESREPREG-------RDSRERDAQQAKE 752
Query: 336 EESSAI-VAVAD----ERAPPIPQPAIDPSV 413 S+A AVAD A +PQ +D ++ Sbjct: 753 AASAAAPAAVADLIDPTAAAQVPQALVDATM 783
>tr|B4KAA2|B4KAA2_DROMO GI23239 OS=Drosophila mojavensis GN=GI23239 PE=4 SV=1 Length = 996
Score = 33.5 bits (75), Expect = 5.4 Identities = 23/84 (27%), Positives = 36/84 (42%) Frame = +3
Query: 189 RSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHRKRAGQMGGEEESSAIVAVAD 368 R+ F+ + +A+ E RPS+R + S +R A + +A A A Sbjct: 365 RTEFQTTQQSRARRTVQFERRPSQRFASRQSHLLRERQKESAAAAVATVNARAAAAAAAA 424
Query: 369 ERAPPIPQPAIDPSVQQRWNELET 440 P +P P++ PSV N ET Sbjct: 425 AAGPAMPAPSVVPSVASNENNNET 448
>tr|B4H3K6|B4H3K6_DROPE GL15194 OS=Drosophila persimilis GN=GL15194 PE=4 SV=1 Length = 447
Score = 33.5 bits (75), Expect = 5.4 Identities = 28/104 (26%), Positives = 45/104 (43%) Frame = +3
Query: 129 ITFKNASTIGKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHR 308 +T ++ GK +Q+ + E + + AQTI R P E + R Sbjct: 118 LTLRDRIEAGKRRFQEATPEEKRRIHRVLEAAQTIRRRRDEPLEAR-------------R 164
Query: 309 KRAGQMGGEEESSAIVAVADERAPPIPQPAIDPSVQQRWNELET 440 ++AG+ +EE +DE PP P + P +Q R +E ET Sbjct: 165 RQAGRATSKEEPGH---ESDEAPPPPPFRVVLPPMQSRTDEAET 205
>tr|B1BU12|B1BU12_CLOPE Resolvase/recombinase OS=Clostridium perfringens E str. JGS1987 GN=AC3_0180 PE=4 SV=1 Length = 221
Score = 33.1 bits (74), Expect = 7.0 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +1
Query: 202 KERKWVKHRQSETESSVHLKGKKMDRVKKA*NAHTERELDKWVAKK 339 KER +K RQSE ++ KGK + R + + + DKW AKK Sbjct: 146 KERVKIKQRQSEGIANAKAKGKHLGRPRIEYPGNFKEVYDKWKAKK 191
>tr|Q9ZSW4|Q9ZSW4_CITSI Putative ethylene receptor OS=Citrus sinensis GN=ERS PE=2 SV=1 Length = 634
Score = 33.1 bits (74), Expect = 7.0 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%) Frame = -2
Query: 287 FLTRSIFFPFRWTLLSVSD--CLC-LTHFLSFKWT 192 F+ +S FFP+RW L+ LC LTHF+S WT Sbjct: 42 FVQKSAFFPYRWVLMQFGSFIILCGLTHFISL-WT 75
>tr|B7ZQ92|B7ZQ92_XENLA Putative uncharacterized protein OS=Xenopus laevis PE=2 SV=1 Length = 581
Score = 32.7 bits (73), Expect = 9.2 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Frame = +3
Query: 141 NASTIGKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHRKRAG 320 N + G+ +W Q S E E ++ A + E ER + G R G Sbjct: 159 NPAPEGEQAWPQSSGE----EELQLQLALAMSKEEAEQEERIKRGDDLRLQMALEESRKG 214
Query: 321 QMGGEEESSAIVAVADERAPPIP-QPAIDP 407 +EE S+++ +AD +PP P P DP Sbjct: 215 APSKQEEQSSLMDLADVFSPPAPVAPTADP 244
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