BP917430
Clone id YMU001_000100_F12
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AGGCACGAGAGCGTGGCGTGTTTTGGAGCAACGCTCTCCTGCTCTTACGTCGAACAGACA
ATTAGCTCGAAGAACGCAAGAAGCTACATAAAGTAGGAGAACATCAGTTATGAGTGGAGA
TGAAGCGTATTACATTCAAAAACGCAAGTACTATCGGAAAACTCTCATGGCAGCAGAGAA
GCAGGGAGAGGAGTCCATTTGAAGGAAAGGAAATGGGTCAAGCACAGACAATCTGAAACA
GAGAGTAGCGTCCATCTGAAAGGAAAGAAAATGGATCGAGTTAAGAAAGCTTGAAACGCA
CACACAGAAAGAGAGCTGGACAAATGGGTGGCGAAGAAGAATCATCTGCTATTGTTGCAG
TGGCCGATGAGAGAGCCCCTCCTATACCACAGCCTGCCATTGACCCTTCTGTGCAGCAGC
GGTGGAACGAGCTTGAAACTGTTCACCTTATTGCTGCCTATC
■■Homology search results ■■ -
sp_hit_id Q8L6J1
Definition sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum
Align length 73
Score (bit) 33.9
E-value 0.35
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917430|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_F12.
(462 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas... 34 0.35
sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast... 33 0.45
sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas... 33 0.45
sp|Q9Z0U5|ADO_RAT Aldehyde oxidase OS=Rattus norvegicus GN=Aox1 ... 33 0.79
sp|O54754|ADO_MOUSE Aldehyde oxidase OS=Mus musculus GN=Aox1 PE=... 32 1.0
sp|Q8CHG7|RPGF2_MOUSE Rap guanine nucleotide exchange factor 2 (... 32 1.7
sp|Q5FB27|ADO_MACFA Aldehyde oxidase OS=Macaca fascicularis GN=A... 31 2.3
sp|Q06278|ADO_HUMAN Aldehyde oxidase OS=Homo sapiens GN=AOX1 PE=... 31 2.3
sp|P81718|PTN6_RAT Tyrosine-protein phosphatase non-receptor typ... 31 3.0
sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis... 30 3.8
sp|Q5ZIG2|SLU7_CHICK Pre-mRNA-splicing factor SLU7 OS=Gallus gal... 30 3.9
sp|P80456|ADO_RABIT Aldehyde oxidase OS=Oryctolagus cuniculus GN... 30 3.9
sp|P48034|ADO_BOVIN Aldehyde oxidase OS=Bos taurus GN=AOX1 PE=1 ... 30 5.1
sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cunicul... 30 6.5
sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cunicul... 30 6.5
sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa GN=RYR1 PE... 30 6.5
sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR... 30 6.5
sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis... 30 6.5
sp|Q609C0|IF2_METCA Translation initiation factor IF-2 OS=Methyl... 30 6.5
sp|P22697|CYS3_NEUCR Regulatory protein cys-3 OS=Neurospora cras... 30 6.5
sp|Q751P0|PXR1_ASHGO Protein PXR1 OS=Ashbya gossypii GN=PXR1 PE=... 30 6.7
sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR... 29 8.5
sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR... 29 8.5
sp|Q9Y4G8|RPGF2_HUMAN Rap guanine nucleotide exchange factor 2 O... 29 8.5
sp|B0BNL4|HRG1_RAT Heme transporter HRG1 OS=Rattus norvegicus GN... 29 8.5
sp|P29351|PTN6_MOUSE Tyrosine-protein phosphatase non-receptor t... 29 8.7

>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
Length = 977

Score = 33.9 bits (76), Expect = 0.35
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +2

Query: 131 YIQKRKYYRKTLMAAEKQGEESI*RKGNGSSTDNLKQRVASI*KERKWIELRKLETHTQK 310
+++K K +K + A+ Q + S T L++RV S+ K + +E+RKL +
Sbjct: 267 FLEKTKKLQKHMTGAQSQEDMS-------KETMILRKRVKSLIKRNRVVEVRKLMKSEEP 319

Query: 311 ESWTNGWRRRIIC 349
ESW + ++ C
Sbjct: 320 ESWGRDTQAKLGC 332


>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic
OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1
Length = 977

Score = 33.5 bits (75), Expect = 0.45
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +2

Query: 131 YIQKRKYYRKTLMAAEKQGEESI*RKGNGSSTDNLKQRVASI*KERKWIELRKLETHTQK 310
+++K K +K + A+ Q + S T L++RV S+ K + +E+RKL +
Sbjct: 268 FLEKTKKLQKHMTGAQSQEDMS-------RETMILRKRVKSLIKRNRVVEVRKLMKSEEP 320

Query: 311 ESWTNGWRRRIIC 349
ESW + ++ C
Sbjct: 321 ESWGRDTQAKLGC 333


>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1
Length = 977

Score = 33.5 bits (75), Expect = 0.45
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +2

Query: 131 YIQKRKYYRKTLMAAEKQGEESI*RKGNGSSTDNLKQRVASI*KERKWIELRKLETHTQK 310
+++K K +K + A+ Q + S T L++RV S+ K + +E+RKL +
Sbjct: 268 FLEKTKKLQKHMTGAQSQEDMS-------RETMILRKRVKSLIKRNRVVEVRKLMKSEEP 320

Query: 311 ESWTNGWRRRIIC 349
ESW + ++ C
Sbjct: 321 ESWGRDTQAKLGC 333


>sp|Q9Z0U5|ADO_RAT Aldehyde oxidase OS=Rattus norvegicus GN=Aox1 PE=2
SV=1
Length = 1333

Score = 32.7 bits (73), Expect = 0.79
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1

Query: 163 SHGSREAGRGVHLKERKWVKHRQSETESSVHLKGKKMDRV 282
SHG E G+GVH K + V SSVHL+G + V
Sbjct: 1036 SHGGIEMGQGVHTKMIQVVSRELKMPMSSVHLRGTSTETV 1075


>sp|O54754|ADO_MOUSE Aldehyde oxidase OS=Mus musculus GN=Aox1 PE=2
SV=2
Length = 1333

Score = 32.3 bits (72), Expect = 1.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1

Query: 163 SHGSREAGRGVHLKERKWVKHRQSETESSVHLKGKKMDRV 282
SHG E G+GVH K + V SSVHL+G + V
Sbjct: 1036 SHGGIEMGQGVHTKMIQVVSRELRMPMSSVHLRGTSTETV 1075


>sp|Q8CHG7|RPGF2_MOUSE Rap guanine nucleotide exchange factor 2
(Fragment) OS=Mus musculus GN=Rapgef2 PE=1 SV=1
Length = 1138

Score = 31.6 bits (70), Expect = 1.7
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3

Query: 120 MKRITFKNASTIGKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKR 299
M ++ F + ST K + Q +SRE + QAQ+ R S G E
Sbjct: 936 MDQMMFSDHST--KYNRQNQSRE-------SLEQAQS---RASWASSTGYWGEDSEGDTG 983

Query: 300 THRKRAGQ-MGGEEESSAIVAVADERAPPIPQPA 398
T ++R G+ + E ESS++V V E A P+P PA
Sbjct: 984 TIKRRGGKDVSAEAESSSMVPVTTEEAKPVPMPA 1017


>sp|Q5FB27|ADO_MACFA Aldehyde oxidase OS=Macaca fascicularis GN=AOX1
PE=2 SV=1
Length = 1338

Score = 31.2 bits (69), Expect = 2.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1

Query: 163 SHGSREAGRGVHLKERKWVKHRQSETESSVHLKGKKMDRVKKA 291
+HG E G+GVH K + V S+VHL+G + V A
Sbjct: 1041 THGGIEMGQGVHTKMIQVVSRELGMPISNVHLRGTSTETVPNA 1083


>sp|Q06278|ADO_HUMAN Aldehyde oxidase OS=Homo sapiens GN=AOX1 PE=2
SV=2
Length = 1338

Score = 31.2 bits (69), Expect = 2.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1

Query: 163 SHGSREAGRGVHLKERKWVKHRQSETESSVHLKGKKMDRVKKA 291
+HG E G+GVH K + V S+VHL+G + V A
Sbjct: 1041 THGGIEMGQGVHTKMIQVVSRELRMPMSNVHLRGTSTETVPNA 1083


>sp|P81718|PTN6_RAT Tyrosine-protein phosphatase non-receptor type 6
OS=Rattus norvegicus GN=Ptpn6 PE=1 SV=1
Length = 613

Score = 30.8 bits (68), Expect = 3.0
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1

Query: 187 RGVHLKERKWVKHRQSETESSVHLKGKKMDRVKKA*NAHTERELDKWVAKKNHLLL---- 354
R H K + + E +VH K KK ++VKK +A ++E +K K+N L
Sbjct: 548 RSAHAKASRTSSKHKEEVYENVHSKNKKEEKVKKQRSA--DKEKNKGSLKRNISLTPCRG 605

Query: 355 LQWPMRE 375
L+W R+
Sbjct: 606 LRWADRD 612


>sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis
thaliana GN=RPL19A PE=2 SV=1
Length = 214

Score = 30.4 bits (67), Expect = 3.8
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3

Query: 18 VFWSNALLLLRRTDN*LEERKKLHKVGEHQL*VEMKRITFKNASTIGK---LSWQQRSRE 188
V W + +LRR E KK+ K H + + +K FKN + + S +++RE
Sbjct: 93 VLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKARE 152

Query: 189 RSPFEGKEMGQAQTI*NRE*RPSERKE 269
++ + E +A+ +RE + + R+E
Sbjct: 153 KTLSDQFEAKRAKNKASRERKHARREE 179


tr_hit_id A7TGX1
Definition tr|A7TGX1|A7TGX1_VANPO Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294)
Align length 105
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917430|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_F12.
(462 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7TGX1|A7TGX1_VANPO Putative uncharacterized protein OS=Vande... 35 2.4
tr|B3L8G1|B3L8G1_PLAKH Chloroquine resistance marker protein, pu... 34 4.1
tr|A7M0F3|A7M0F3_BACOV Sensor protein OS=Bacteroides ovatus ATCC... 34 4.1
tr|B5SMG9|B5SMG9_RALSO Ribonuclease e (Rnase e) protein OS=Ralst... 33 5.4
tr|A3RWT3|A3RWT3_RALSO Ribonuclease E OS=Ralstonia solanacearum ... 33 5.4
tr|B4KAA2|B4KAA2_DROMO GI23239 OS=Drosophila mojavensis GN=GI232... 33 5.4
tr|B4H3K6|B4H3K6_DROPE GL15194 OS=Drosophila persimilis GN=GL151... 33 5.4
tr|B1BU12|B1BU12_CLOPE Resolvase/recombinase OS=Clostridium perf... 33 7.0
tr|Q9ZSW4|Q9ZSW4_CITSI Putative ethylene receptor OS=Citrus sine... 33 7.0
tr|B7ZQ92|B7ZQ92_XENLA Putative uncharacterized protein OS=Xenop... 33 9.2
tr|Q8K8F9|Q8K8F9_STRP3 Putative uncharacterized protein (Putativ... 33 9.2
tr|B6WPH1|B6WPH1_9BACE Putative uncharacterized protein OS=Bacte... 33 9.2

>tr|A7TGX1|A7TGX1_VANPO Putative uncharacterized protein
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=Kpol_1032p15 PE=4 SV=1
Length = 846

Score = 34.7 bits (78), Expect = 2.4
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +1

Query: 52 EQTISSKNARSYIK*ENISYEWR*SVLHSKTQVLSENSHGSREAGRGVHLKERKWVKHRQ 231
++ I+ K A+ Y++ NI + L +K + +G ++ +HL E W Q
Sbjct: 451 DRFINCKTAKYYLRANNIEKAVEVASLFTKND---DAVNGVKD----LHLVEASWFIIEQ 503

Query: 232 SETESSVHLKGKK-MDRVKKA*NAHTERELDKWVAKKNHLLLLQW 363
+E + +H+ KK + ++ + A T+ E+ + + K+ L L+W
Sbjct: 504 AEAYNRLHIDSKKKLSELRASLEAATDEEVSETDSSKSELKELEW 548


>tr|B3L8G1|B3L8G1_PLAKH Chloroquine resistance marker protein,
putative OS=Plasmodium knowlesi (strain H) GN=PKH_121070
PE=4 SV=1
Length = 7147

Score = 33.9 bits (76), Expect = 4.1
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +1

Query: 232 SETESSVHLKGKKMDRVKKA*NAHTERELDKWVAK----KNHLLLLQWPMREP 378
SE+ + LKGKK + +K N + R+ DK++ KNHLL + P++ P
Sbjct: 426 SESLENPVLKGKKNEMIKLKRNKNVNRKSDKFIPHDKEGKNHLLNIHSPVKHP 478


>tr|A7M0F3|A7M0F3_BACOV Sensor protein OS=Bacteroides ovatus ATCC 8483
GN=BACOVA_03582 PE=4 SV=1
Length = 1459

Score = 33.9 bits (76), Expect = 4.1
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +2

Query: 221 STDNLKQRVASI*KERKWIE---LRKLETHTQKESWTNGW 331
S+ LK R+ S+ ++RK ++ L KL HTQ+E NGW
Sbjct: 1300 SSTYLKTRILSLLRQRKQLQDLYLSKLSEHTQEEDHINGW 1339


>tr|B5SMG9|B5SMG9_RALSO Ribonuclease e (Rnase e) protein
OS=Ralstonia solanacearum IPO1609 GN=rne PE=4 SV=1
Length = 1018

Score = 33.5 bits (75), Expect = 5.4
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +3

Query: 156 GKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHRKRAGQMGGE 335
G+ Q RER+P EG+E G+ +RE R S G R R+R Q E
Sbjct: 704 GRRERSQERRERAPREGREGGRE----SREGRESREPREG-------RDSRERDAQQAKE 752

Query: 336 EESSAI-VAVAD----ERAPPIPQPAIDPSV 413
S+A AVAD A +PQ +D ++
Sbjct: 753 AASAAAPAAVADLIDPTAAAQVPQALVDATM 783


>tr|A3RWT3|A3RWT3_RALSO Ribonuclease E OS=Ralstonia solanacearum
UW551 GN=RRSL_01178 PE=4 SV=1
Length = 1018

Score = 33.5 bits (75), Expect = 5.4
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +3

Query: 156 GKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHRKRAGQMGGE 335
G+ Q RER+P EG+E G+ +RE R S G R R+R Q E
Sbjct: 704 GRRERSQERRERAPREGREGGRE----SREGRESREPREG-------RDSRERDAQQAKE 752

Query: 336 EESSAI-VAVAD----ERAPPIPQPAIDPSV 413
S+A AVAD A +PQ +D ++
Sbjct: 753 AASAAAPAAVADLIDPTAAAQVPQALVDATM 783


>tr|B4KAA2|B4KAA2_DROMO GI23239 OS=Drosophila mojavensis GN=GI23239
PE=4 SV=1
Length = 996

Score = 33.5 bits (75), Expect = 5.4
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +3

Query: 189 RSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHRKRAGQMGGEEESSAIVAVAD 368
R+ F+ + +A+ E RPS+R + S +R A + +A A A
Sbjct: 365 RTEFQTTQQSRARRTVQFERRPSQRFASRQSHLLRERQKESAAAAVATVNARAAAAAAAA 424

Query: 369 ERAPPIPQPAIDPSVQQRWNELET 440
P +P P++ PSV N ET
Sbjct: 425 AAGPAMPAPSVVPSVASNENNNET 448


>tr|B4H3K6|B4H3K6_DROPE GL15194 OS=Drosophila persimilis GN=GL15194
PE=4 SV=1
Length = 447

Score = 33.5 bits (75), Expect = 5.4
Identities = 28/104 (26%), Positives = 45/104 (43%)
Frame = +3

Query: 129 ITFKNASTIGKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHR 308
+T ++ GK +Q+ + E + + AQTI R P E + R
Sbjct: 118 LTLRDRIEAGKRRFQEATPEEKRRIHRVLEAAQTIRRRRDEPLEAR-------------R 164

Query: 309 KRAGQMGGEEESSAIVAVADERAPPIPQPAIDPSVQQRWNELET 440
++AG+ +EE +DE PP P + P +Q R +E ET
Sbjct: 165 RQAGRATSKEEPGH---ESDEAPPPPPFRVVLPPMQSRTDEAET 205


>tr|B1BU12|B1BU12_CLOPE Resolvase/recombinase OS=Clostridium
perfringens E str. JGS1987 GN=AC3_0180 PE=4 SV=1
Length = 221

Score = 33.1 bits (74), Expect = 7.0
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1

Query: 202 KERKWVKHRQSETESSVHLKGKKMDRVKKA*NAHTERELDKWVAKK 339
KER +K RQSE ++ KGK + R + + + DKW AKK
Sbjct: 146 KERVKIKQRQSEGIANAKAKGKHLGRPRIEYPGNFKEVYDKWKAKK 191


>tr|Q9ZSW4|Q9ZSW4_CITSI Putative ethylene receptor OS=Citrus
sinensis GN=ERS PE=2 SV=1
Length = 634

Score = 33.1 bits (74), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -2

Query: 287 FLTRSIFFPFRWTLLSVSD--CLC-LTHFLSFKWT 192
F+ +S FFP+RW L+ LC LTHF+S WT
Sbjct: 42 FVQKSAFFPYRWVLMQFGSFIILCGLTHFISL-WT 75


>tr|B7ZQ92|B7ZQ92_XENLA Putative uncharacterized protein OS=Xenopus
laevis PE=2 SV=1
Length = 581

Score = 32.7 bits (73), Expect = 9.2
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3

Query: 141 NASTIGKLSWQQRSRERSPFEGKEMGQAQTI*NRE*RPSERKENGSS*ESLKRTHRKRAG 320
N + G+ +W Q S E E ++ A + E ER + G R G
Sbjct: 159 NPAPEGEQAWPQSSGE----EELQLQLALAMSKEEAEQEERIKRGDDLRLQMALEESRKG 214

Query: 321 QMGGEEESSAIVAVADERAPPIP-QPAIDP 407
+EE S+++ +AD +PP P P DP
Sbjct: 215 APSKQEEQSSLMDLADVFSPPAPVAPTADP 244