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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917434
Clone id YMU001_000100_G07
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGAACAGACTGAAGCTCGCCATGGTGCTTGTTTCGACTCTCTCAGGCAACAAATTATGA
GCATTCACTATCCCGCTACTGCTGCTGCACTGCAGCCCGATCATCCTCCCTTCTCCTTTG
CCGGCATTCGTGTATACTTTGTCGAAGCTGGCGTGCAGCCTCGCCGTTTGAAGATACGAA
GATGCACCAGATGTGAGACCCCCGATTCTCCAAAAGGATGCGTCCCTTCAGGCTTCGCCC
AAGAGTCGCACCTATTCGGTGAATGGCCATGCCTCTTCAGCGAATGGCTGCACCTTTACA
CCGACGGGTCACGACTCTACAACAAAAAGGCACGACTATTGGCATAGAGTCATGTCTCTT
GACCTATAGTCATGTCTTTTCATCGTCTCTTTTGTTTCTATATAAGAACACCCCT
■■Homology search results ■■ -
sp_hit_id Q5XIA0
Definition sp|Q5XIA0|DZI1L_RAT Zinc finger protein DZIP1L OS=Rattus norvegicus
Align length 47
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917434|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_G07.
         (415 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XIA0|DZI1L_RAT Zinc finger protein DZIP1L OS=Rattus norvegi...    31   1.7  
sp|Q86YD3|TMM25_HUMAN Transmembrane protein 25 OS=Homo sapiens G...    29   6.4  
sp|A1VN15|HEM6_POLNA Coproporphyrinogen III oxidase, aerobic OS=...    29   6.4  
sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sap...    29   6.4  
sp|Q5ALL8|POB3_CANAL FACT complex subunit POB3 OS=Candida albica...    29   6.5  
sp|P08564|POLS_RUBVV Structural polyprotein OS=Rubella virus (st...    29   8.4  
sp|Q99IE6|POLS_RUBVO Structural polyprotein OS=Rubella virus (st...    29   8.4  
sp|Q8VA10|POLS_RUBVN Structural polyprotein OS=Rubella virus (st...    29   8.4  
sp|P08563|POLS_RUBVM Structural polyprotein OS=Rubella virus (st...    29   8.4  
sp|Q9J6K8|POLS_RUBVD Structural polyprotein OS=Rubella virus (st...    29   8.4  
sp|Q6X2U1|POLS_RUBVC Structural polyprotein OS=Rubella virus (st...    29   8.4  
sp|Q6X2U3|POLS_RUBVB Structural polyprotein OS=Rubella virus (st...    29   8.4  

>sp|Q5XIA0|DZI1L_RAT Zinc finger protein DZIP1L OS=Rattus norvegicus
           GN=Dzip1l PE=2 SV=1
          Length = 776

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 187 PDVRPPILQKDASL---QASPKSRTYSVNGHASSANGCTFTPTGHDS 318
           PD +PP+  +  +L   +  PK+RT +V   +  A   T TP GH S
Sbjct: 535 PDGQPPVKSQRTTLATREVRPKTRTLTVALPSKPAEPSTSTPRGHSS 581


>sp|Q86YD3|TMM25_HUMAN Transmembrane protein 25 OS=Homo sapiens
           GN=TMEM25 PE=1 SV=1
          Length = 366

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +1

Query: 217 DASLQASPKSRTYSVNGHASSANGCTFTPTGH 312
           D  LQ +  SR  SV G A S    TFT T H
Sbjct: 68  DGQLQEASTSRLLSVGGEAFSGGTSTFTVTAH 99


>sp|A1VN15|HEM6_POLNA Coproporphyrinogen III oxidase, aerobic
           OS=Polaromonas naphthalenivorans (strain CJ2) GN=hemF
           PE=3 SV=1
          Length = 307

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -1

Query: 334 RAFLL*SRDPSV*RCSHSLKRHGHSPNRCDSWAKPEGTHPFGESGVSHLVHLRIFKRRGC 155
           R FLL  ++    R +H++      P   D W K  G    G      L   R+F+R GC
Sbjct: 10  RTFLLGLQE----RITHAIAEVDGQPFMTDHWQKEPGETLQGNGITKILEQGRVFERAGC 65

Query: 154 TPASTKYTRMP 122
             +  +  R+P
Sbjct: 66  GFSHVRGPRLP 76


>sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo
           sapiens GN=CEP135 PE=1 SV=1
          Length = 1140

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 295 RCSHSLKRHGHSPNRCDSWAKP-EGTHPFGESGVSHLVHLRIFKRRGCTPASTKYTRMPA 119
           R  H +KR   SP+R D++ K  E    + +  +  L H  I +RR C   ST Y+   A
Sbjct: 428 RLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQH--IIQRRSC---STSYS---A 479

Query: 118 KEK 110
           +EK
Sbjct: 480 REK 482


>sp|Q5ALL8|POB3_CANAL FACT complex subunit POB3 OS=Candida albicans
           GN=POB3 PE=3 SV=1
          Length = 538

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -3

Query: 158 LHASFDKVYTNAGKGEGRM------IGLQCSSSSGIVNAHNLLPERVETSTMASFS 9
           ++  F+K+Y N  +  GRM      +G + S+SSG  +   LLP   E   +AS+S
Sbjct: 2   VNTDFEKIYLNQSRAGGRMRIAESGLGWKASASSGSTSQPFLLPR--EEILIASWS 55


>sp|P08564|POLS_RUBVV Structural polyprotein OS=Rubella virus (strain
            TO-336) PE=3 SV=3
          Length = 1063

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +3

Query: 96   PDHPP----FSFAGIR-VYFVEAGVQPRRLKIRRCTRCETPDSPKGCVPSG 233
            P HPP      F  +R V    A   PR +++  C +C TP   +G  P G
Sbjct: 897  PWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGG 947


>sp|Q99IE6|POLS_RUBVO Structural polyprotein OS=Rubella virus (strain
            TO-336 vaccine) PE=3 SV=1
          Length = 1063

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +3

Query: 96   PDHPP----FSFAGIR-VYFVEAGVQPRRLKIRRCTRCETPDSPKGCVPSG 233
            P HPP      F  +R V    A   PR +++  C +C TP   +G  P G
Sbjct: 897  PWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGG 947


>sp|Q8VA10|POLS_RUBVN Structural polyprotein OS=Rubella virus (strain
            RN-UK86) PE=3 SV=1
          Length = 1063

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +3

Query: 96   PDHPP----FSFAGIR-VYFVEAGVQPRRLKIRRCTRCETPDSPKGCVPSG 233
            P HPP      F  +R V    A   PR +++  C +C TP   +G  P G
Sbjct: 897  PWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGG 947


>sp|P08563|POLS_RUBVM Structural polyprotein OS=Rubella virus (strain
            M33) PE=1 SV=2
          Length = 1063

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +3

Query: 96   PDHPP----FSFAGIR-VYFVEAGVQPRRLKIRRCTRCETPDSPKGCVPSG 233
            P HPP      F  +R V    A   PR +++  C +C TP   +G  P G
Sbjct: 897  PWHPPGPLGLKFKTVRPVALPRALAPPRNVRVTGCYQCGTPALVEGLAPGG 947


>sp|Q9J6K8|POLS_RUBVD Structural polyprotein OS=Rubella virus (strain
            Cendehill) PE=3 SV=1
          Length = 1063

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +3

Query: 96   PDHPP----FSFAGIR-VYFVEAGVQPRRLKIRRCTRCETPDSPKGCVPSG 233
            P HPP      F  +R V    A   PR +++  C +C TP   +G  P G
Sbjct: 897  PWHPPGPLGLKFKTVRPVTLPRALAPPRNVRVTGCYQCGTPALVEGLAPGG 947
tr_hit_id A3SN72
Definition tr|A3SN72|A3SN72_9RHOB Pyridine nucleotide-disulphide oxidoreductase family protein OS=Roseovarius nubinhibens ISM
Align length 45
Score (bit) 28.5
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917434|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_G07.
         (415 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3SN72|A3SN72_9RHOB Pyridine nucleotide-disulphide oxidoreduc...    28   0.57 
tr|B3RPK2|B3RPK2_TRIAD Putative uncharacterized protein (Fragmen...    36   1.1  
tr|Q7SXX5|Q7SXX5_DANRE Zgc:63694 OS=Danio rerio GN=zgc:63694 PE=...    35   2.4  
tr|Q32PW1|Q32PW1_DANRE Zgc:122991 protein OS=Danio rerio GN=zgc:...    35   2.4  
tr|A4Z6Q4|A4Z6Q4_9BACT Polyphosphate kinase (Fragment) OS=uncult...    34   3.2  
tr|A4RSD7|A4RSD7_OSTLU Predicted protein OS=Ostreococcus lucimar...    34   3.2  
tr|B4J873|B4J873_DROGR GH21308 OS=Drosophila grimshawi GN=GH2130...    34   4.1  
tr|A9TCX5|A9TCX5_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A5AP37|A5AP37_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A1WQN8|A1WQN8_VEREI Coproporphyrinogen oxidase OS=Verminephro...    33   5.4  
tr|A8TZ07|A8TZ07_9PROT Putative uncharacterized protein OS=alpha...    27   5.6  
tr|B6B2E9|B6B2E9_9RHOB Pyridine nucleotide-disulphide oxidoreduc...    30   5.6  
tr|A6DX73|A6DX73_9RHOB Putative uncharacterized protein OS=Roseo...    33   7.1  
tr|Q385H7|Q385H7_9TRYP Putative uncharacterized protein OS=Trypa...    33   7.1  

>tr|A3SN72|A3SN72_9RHOB Pyridine nucleotide-disulphide
           oxidoreductase family protein OS=Roseovarius nubinhibens
           ISM GN=ISM_13640 PE=4 SV=1
          Length = 444

 Score = 28.5 bits (62), Expect(2) = 0.57
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 343 ANSRAFLL*SRDPSV*RCSHSLKRHGHSPNRCDSWAKPEGTHPFG 209
           A  R   +    P+   C+H L  HGH     D+  KP G + +G
Sbjct: 140 ATGRRVAVVGAGPAGLACAHRLALHGHEVTLYDARPKPGGLNEYG 184



 Score = 27.3 bits (59), Expect(2) = 0.57
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = -3

Query: 209 RIGGLTSGASSYLQTA----RLHASFDKVYTNAGKGEGRMIGLQCSSSSGIVNAHNLLPE 42
           +IGG+T      L        L A FD V+   G G    +GL+     G+ +A + + E
Sbjct: 204 QIGGITLETGQRLGDGLSLDSLRAGFDAVFLGIGLGGVNALGLEGEDRDGLRDAVDFIAE 263

Query: 41  RVETSTMASFSL 6
             ++S +    +
Sbjct: 264 LRQSSDLTGLPI 275


>tr|B3RPK2|B3RPK2_TRIAD Putative uncharacterized protein (Fragment)
           OS=Trichoplax adhaerens GN=TRIADDRAFT_20780 PE=4 SV=1
          Length = 612

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +1

Query: 172 RYEDAPDVRPPILQKDASLQASPKSRTYSVNGHASSANGCTFTPTGHDSTTKRHDYWHRV 351
           R +  PD   P L K A LQ  P S      GH S     + +P+G    +   D   R 
Sbjct: 245 RIQIDPDELLPKLPKPADLQPFPSSERIVYKGHTSIVRSISLSPSGRWMVSGHDDKTVRF 304

Query: 352 MSLDL*SCLFIVSF 393
             +D+  C+  ++F
Sbjct: 305 WDVDIGRCIKTITF 318


>tr|Q7SXX5|Q7SXX5_DANRE Zgc:63694 OS=Danio rerio GN=zgc:63694 PE=2
           SV=1
          Length = 653

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 67  TIPLLLLHCSPIILPS-PLPAFVYTLSKLACSLAV*RYEDAPDVRPPILQKDASLQASPK 243
           ++P L     P++LPS P+P  +  LS LA +       + P ++  +LQ +  ++   +
Sbjct: 364 SLPTLAQDFKPVVLPSDPIPVDLKPLSSLASTFKPAHLREHPVLQSVVLQSEQPVELEIQ 423

Query: 244 SRTYSVNGHASSANGCTFTPTGHDS 318
           S   S+       +     PTGH S
Sbjct: 424 SSDLSLVKPGPVTSSFVSQPTGHPS 448


>tr|Q32PW1|Q32PW1_DANRE Zgc:122991 protein OS=Danio rerio
           GN=zgc:122991 PE=2 SV=1
          Length = 454

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 67  TIPLLLLHCSPIILPS-PLPAFVYTLSKLACSLAV*RYEDAPDVRPPILQKDASLQASPK 243
           ++P L     P++LPS P+P  +  LS LA +       + P ++  +LQ +  ++   +
Sbjct: 165 SLPTLAQDFKPVVLPSDPIPVDLKPLSSLASTFKPAHLREHPVLQSVVLQSEQPVELEIQ 224

Query: 244 SRTYSVNGHASSANGCTFTPTGHDS 318
           S   S+       +     PTGH S
Sbjct: 225 SSDLSLVKPGPVTSSFVSQPTGHPS 249


>tr|A4Z6Q4|A4Z6Q4_9BACT Polyphosphate kinase (Fragment)
           OS=uncultured bacterium GN=ppk PE=3 SV=1
          Length = 405

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +3

Query: 9   TEARHGACFDSLRQQIMSIHYPATAAALQPDHPPFSFAGIRVYFVEAGVQPRRLKIRRCT 188
           T+AR G  F+ +RQ  + +H           HP  SFA     FVEA   PR L I++  
Sbjct: 274 TKARPGDFFNIIRQGDLLVH-----------HPYHSFAASTQQFVEAAADPRVLAIKQTL 322

Query: 189 RCETPDSP 212
              + +SP
Sbjct: 323 YRTSANSP 330


>tr|A4RSD7|A4RSD7_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_30290 PE=4 SV=1
          Length = 260

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -3

Query: 209 RIGGLTSGASSYLQTARLHASFDKVYTNA-----GKGEGRMIGLQCSSSSG 72
           R GG  SG   Y Q   L+ SFD+ YT       GKGE R  G +    SG
Sbjct: 28  RSGGGRSGNDDYAQDFALYGSFDESYTEGAGLLLGKGELRSSGTRAKGRSG 78


>tr|B4J873|B4J873_DROGR GH21308 OS=Drosophila grimshawi GN=GH21308
           PE=4 SV=1
          Length = 531

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
 Frame = +1

Query: 94  SPIILPSPLPAFVYTLSKLACSLAV*RYEDAPDVRPPILQKDASLQASPKSRTYSV---- 261
           +P+ LP PLP  + T S +   L + + +DA     PI Q+    Q   + +        
Sbjct: 185 APVSLPLPLP--LPTQSPIPQQLVLPQLDDARQTTSPIHQQQQQQQQQQQQQQQQKNVLG 242

Query: 262 -----NGHASSANGCTFTPTGHDSTTK 327
                NG +SS+NG   + +  DS TK
Sbjct: 243 EISLNNGSSSSSNGSNSSSSSSDSNTK 269


>tr|A9TCX5|A9TCX5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193840 PE=4 SV=1
          Length = 535

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 117 FAGIRVYFVEAGVQPRRLKI 176
           F GI  YFVE G+QPRRL+I
Sbjct: 29  FRGIAAYFVETGIQPRRLQI 48


>tr|A5AP37|A5AP37_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_023299 PE=4 SV=1
          Length = 1815

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
 Frame = +3

Query: 75   ATAAALQPDHPPFSFAGIRVYFVEAGVQP---RRLKIRRCTRCETPDSPKGCVPSGFAQE 245
            A  AALQP+   FS    R+ F+  GV+     R+K RRC R   P+S  G V +  A++
Sbjct: 1583 ANFAALQPNSEDFSTEDERLSFLSLGVRKSGWARIKWRRC-RGSNPES-NGVVAAATARD 1640

Query: 246  ------SHLFGEWP 269
                  ++LFGE P
Sbjct: 1641 ESVLSNNNLFGELP 1654


>tr|A1WQN8|A1WQN8_VEREI Coproporphyrinogen oxidase
           OS=Verminephrobacter eiseniae (strain EF01-2)
           GN=Veis_4240 PE=4 SV=1
          Length = 323

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 283 SLKRHGHSPNRCDSWAKPEGTHPFGESGVSHLVHLRIFKRRGCTPASTKYTRMP 122
           +L+  G +  R D+W+KP G    G+     L   R+F+R GC  +  +   +P
Sbjct: 36  ALETEGGARFRADAWSKPPGASLSGDGNTLILEGGRVFERAGCGLSHVRGPHLP 89