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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917442
Clone id YMU001_000100_H05
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGTGTGGAGACTACCACAATGCTTGTATGTAAAGATGCGCATTACGAGGAATTAGGAAG
GCTTTTAGAAGAGGACTGGGGTTCTGTGGAGGGCATGCACAACGGGGACCGGTATCGTTG
TAAGGTTGGAGCTTCAGGTATTGGAATGCGCTATTTGAAATCCCGCACCTCCTTGTACAT
ACGATTTCACTATGATCGTTGGATGTGCAAGTTTGGAGTGTGGACTCCCTTACAGAGTGT
AGACGGCGCTATTGCAAGCTTTGACATTGCAGTGAAGATGTCCAACGATGCTTTGGAGGC
AGTCCAAGTGAACAAGCATTGGACTCTCAGTAATGTTCGAGAACATTTGGTTATTATGGG
TTTCGAGGCCCTTTAACAAGCACAATTTCGTTTACAAGGTCACAAGGTGAGAATCCTTCC
ATCACATTTTCAATACATCATGGTTTGTCGATCATTGGATGCTTATTGTAATGAATGTCC
GGAGATTGGGAAGAGACTGGAAGACAAATTGAAGGTCGAGGAGGACTGGGAGATAGATGG
AACTATGCTATCGATC
■■Homology search results ■■ -
sp_hit_id P0A560
Definition sp|P0A560|EMBA_MYCTU Probable arabinosyltransferase A OS=Mycobacterium tuberculosis
Align length 64
Score (bit) 30.8
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917442|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_H05.
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0A560|EMBA_MYCTU Probable arabinosyltransferase A OS=Mycobac...    31   4.7  
sp|P0A561|EMBA_MYCBO Probable arabinosyltransferase A OS=Mycobac...    31   4.7  
sp|Q9IBI4|DPOL_HBVG3 Protein P OS=Hepatitis B virus genotype G (...    31   4.7  
sp|Q8QZQ2|DPOL_HBVG2 Protein P OS=Hepatitis B virus genotype G (...    31   4.7  
sp|Q5T9S5|CCD18_HUMAN Coiled-coil domain-containing protein 18 O...    30   6.1  
sp|Q9J5S2|DPOL_HBVOR Protein P OS=Orangutan hepatitis B virus (i...    30   8.0  
sp|P87744|DPOL_HBVGB Protein P OS=Gibbon hepatitis B virus subty...    30   8.0  
sp|Q69602|DPOL_HBVE1 Protein P OS=Hepatitis B virus genotype E s...    30   8.0  

>sp|P0A560|EMBA_MYCTU Probable arabinosyltransferase A
           OS=Mycobacterium tuberculosis GN=embA PE=3 SV=1
          Length = 1094

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 80  GSVEGMHNGDRYRCKVGASGIGMRYLKSRTSLYIRFHYDRWMCKFGVWTPLQSVDGAIAS 259
           G V G+ +G  +R  +G + +G+        L + F   +W  +FG +  L  V GA+ +
Sbjct: 539 GRVAGLASGPAWRL-IGTTAVGL--------LLLTFTPTKWAVQFGAFAGLAGVLGAVTA 589

Query: 260 FDIA 271
           F  A
Sbjct: 590 FTFA 593


>sp|P0A561|EMBA_MYCBO Probable arabinosyltransferase A
           OS=Mycobacterium bovis GN=embA PE=3 SV=1
          Length = 1094

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 80  GSVEGMHNGDRYRCKVGASGIGMRYLKSRTSLYIRFHYDRWMCKFGVWTPLQSVDGAIAS 259
           G V G+ +G  +R  +G + +G+        L + F   +W  +FG +  L  V GA+ +
Sbjct: 539 GRVAGLASGPAWRL-IGTTAVGL--------LLLTFTPTKWAVQFGAFAGLAGVLGAVTA 589

Query: 260 FDIA 271
           F  A
Sbjct: 590 FTFA 593


>sp|Q9IBI4|DPOL_HBVG3 Protein P OS=Hepatitis B virus genotype G
           (isolate IG29227/2000) GN=P PE=3 SV=1
          Length = 842

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 265 HCSEDVQRCFGGSPSEQALDSQ*CSRTFGYYGFRGPLT 378
           H ++ +++CF   P  + +D + C R  G  GF  P T
Sbjct: 609 HITQKIKQCFRKLPVNRPIDWKVCQRITGLLGFAAPFT 646


>sp|Q8QZQ2|DPOL_HBVG2 Protein P OS=Hepatitis B virus genotype G
           (isolate United States of America/USG17/2002) GN=P PE=3
           SV=1
          Length = 842

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 265 HCSEDVQRCFGGSPSEQALDSQ*CSRTFGYYGFRGPLT 378
           H ++ +++CF   P  + +D + C R  G  GF  P T
Sbjct: 609 HITQKIKQCFRKLPVNRPIDWKVCQRITGLLGFAAPFT 646


>sp|Q5T9S5|CCD18_HUMAN Coiled-coil domain-containing protein 18
            OS=Homo sapiens GN=CCDC18 PE=1 SV=1
          Length = 1454

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
 Frame = +2

Query: 23   LVCKDAHYEELGRLLEEDWGSV--EGMHNGDRYRC---KVGASGIGMRYLKSRTSLYIRF 187
            ++CK  H E L RLL E  G +  E M   +  +    +V    I +R L S   +    
Sbjct: 679  IICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEI---- 734

Query: 188  HYDRWMCKFGVWTPLQSVDGAIASFDIAVKMSNDALEAVQVN---KHWTLSNVREHLVIM 358
                  CK  +   L  ++G    F+  +K  ++ +  +Q     K+ +L    E  VI+
Sbjct: 735  ------CKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVIL 788

Query: 359  GFEAL*QAQFRLQGHKVR 412
                L Q Q  LQ   +R
Sbjct: 789  Q-HTLQQQQQMLQQETIR 805


>sp|Q9J5S2|DPOL_HBVOR Protein P OS=Orangutan hepatitis B virus
           (isolate Somad) GN=P PE=3 SV=1
          Length = 832

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 265 HCSEDVQRCFGGSPSEQALDSQ*CSRTFGYYGFRGPLT 378
           H  + +++CF   P  + +D + C R  G  GF  P T
Sbjct: 599 HIVQKIKQCFRKLPVNRPIDWKVCQRIVGLLGFAAPFT 636


>sp|P87744|DPOL_HBVGB Protein P OS=Gibbon hepatitis B virus subtype
           ayw3q (isolate Hope) GN=P PE=3 SV=1
          Length = 832

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 265 HCSEDVQRCFGGSPSEQALDSQ*CSRTFGYYGFRGPLT 378
           H  + +++CF   P  + +D + C R  G  GF  P T
Sbjct: 599 HIVQKIKQCFRKLPVNRPIDWKVCQRIVGLLGFAAPFT 636


>sp|Q69602|DPOL_HBVE1 Protein P OS=Hepatitis B virus genotype E
           subtype ayw4 (isolate Kou) GN=P PE=3 SV=1
          Length = 842

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 265 HCSEDVQRCFGGSPSEQALDSQ*CSRTFGYYGFRGPLT 378
           H  + ++ CFG  P  + +D + C    G  GF  P T
Sbjct: 609 HIIQKIKHCFGKLPVNRPIDWKVCQGIVGLLGFAAPFT 646
tr_hit_id A4T6D3
Definition tr|A4T6D3|A4T6D3_MYCGI Cell wall arabinan synthesis protein OS=Mycobacterium gilvum (strain PYR-GCK)
Align length 64
Score (bit) 37.0
E-value 0.72
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917442|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_H05.
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4T6D3|A4T6D3_MYCGI Cell wall arabinan synthesis protein OS=M...    37   0.72 
tr|B0YJR7|B0YJR7_HBV Polymerase OS=Hepatitis B virus GN=P PE=4 SV=1    34   4.6  
tr|B8P5R6|B8P5R6_9APHY Predicted protein OS=Postia placenta Mad-...    34   6.0  
tr|A6C500|A6C500_9PLAN Putative uncharacterized protein OS=Planc...    34   6.1  
tr|A7ENA9|A7ENA9_SCLS1 Putative uncharacterized protein OS=Scler...    33   7.8  
tr|Q0VNX2|Q0VNX2_ALCBS Putative uncharacterized protein OS=Alcan...    33   7.9  

>tr|A4T6D3|A4T6D3_MYCGI Cell wall arabinan synthesis protein
           OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_1174
           PE=4 SV=1
          Length = 1071

 Score = 37.0 bits (84), Expect = 0.72
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +2

Query: 80  GSVEGMHNGDRYRCKVGASGIGMRYLKSRTSLYIRFHYDRWMCKFGVWTPLQSVDGAIAS 259
           GSV G HNG  +R  VG +GIG+        L +     +W  +FG +  L    GA+ +
Sbjct: 517 GSVPGAHNGPVWRL-VGTTGIGL--------LLLTLTPTKWAVQFGAFAGLAGALGAVTA 567

Query: 260 FDIA 271
           F +A
Sbjct: 568 FGVA 571


>tr|B0YJR7|B0YJR7_HBV Polymerase OS=Hepatitis B virus GN=P PE=4 SV=1
          Length = 842

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 265 HCSEDVQRCFGGSPSEQALDSQ*CSRTFGYYGFRGPLT 378
           H ++ +++CFG  P  + +D + C R  G  GF  P T
Sbjct: 609 HIAQKIKQCFGKLPVNRPIDWKVCQRIVGLLGFAAPFT 646


>tr|B8P5R6|B8P5R6_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_90946 PE=4 SV=1
          Length = 804

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
 Frame = -3

Query: 305 GLPPKHRWTSSLQCQSLQ*RRLHSVRESTLQTCTSNDHSEIVCT---------RRCGISN 153
           G  P+  W S L       R+L +VR+  ++  +    S++VC+          RC  + 
Sbjct: 516 GREPRTNWRSKL-------RKLRTVRDVNIRAWSLGPPSKLVCSDIAIRACWNNRCDGAA 568

Query: 152 SAFQYLKLQPYNDTGPRCACPPQNPSP-LLKAFLIPRN 42
           SAF +    P  D   R   PP   +P L  +FL  R+
Sbjct: 569 SAFVHELAMPVRDNRVRGLRPPATRAPELASSFLTTRH 606


>tr|A6C500|A6C500_9PLAN Putative uncharacterized protein
           OS=Planctomyces maris DSM 8797 GN=PM8797T_20743 PE=4
           SV=1
          Length = 1337

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 220 HSKLAHPTIIVKSYVQGGAGFQIAHSNT*SSNLTTIPVPVVHALHRTPVL 71
           +S      +++ +  QGG    ++ +NT  +  T   VPVVH L+ TP++
Sbjct: 789 NSSTTSSVLLIDNAGQGGTAGSVSFNNTTVTGTTNAAVPVVHILNTTPIV 838


>tr|A7ENA9|A7ENA9_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_06808 PE=4 SV=1
          Length = 465

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -3

Query: 230 RESTLQTCTSNDHSEIVCTRRCGISNSAFQYLKLQPYNDTGPRCACPPQNPS 75
           RE+ +Q  TS     I  T+   IS   F+ L+L   ++ GPR    PQN S
Sbjct: 150 RENAVQVTTSGFEYTIKATKEVIISAGVFRSLQLLMVSEIGPRAVLEPQNIS 201


>tr|Q0VNX2|Q0VNX2_ALCBS Putative uncharacterized protein
           OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
           DSM 11573) GN=ABO_1678 PE=4 SV=1
          Length = 208

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 22/95 (23%)
 Frame = +2

Query: 41  HYEELGRLLEEDWGSVEGMHNGDRY--------------RCKVGASGIGMRYLKSRTSLY 178
           H+ EL +L     G++E M   +RY               C  G SG+G+R    +  + 
Sbjct: 60  HWLELSQLE----GAIERMLPDERYGALRDDLVLLADMTACLFGVSGLGLRVTALQAPMC 115

Query: 179 IRFHYD----RWMCKFG----VWTPLQSVDGAIAS 259
            RFH D    R +C +G     W P   VD  + S
Sbjct: 116 PRFHVDRIPVRLLCTYGGQGSQWLPFDCVDDQLLS 150