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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917443
Clone id YMU001_000100_H06
Library
Length 473
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGCAAGGCTCACAGATTGGCATTTGAAAGCCCCTCCGCCGAGCATCACAGCAAATGCGAA
AGCGCAGTGGCACAAACAGTTTTGAGAATGGAAGATCAAAGAGCATGTGGCAGTGGCAAG
ATAGTGCTTTGCAGGTTGAGGCAAGCCTACAGGTCAGTCCAATAGCTTGGCTTGCCGGTT
CTGATGAGCGTGTAAAGCTACAGTAAAGATGCCTTGCTGGTTCTTATGAGCGTGTAAAGC
CACAGTAAAAATGCCCTCGGCAAAAGGAAGTACTCCCACTCCCAAAGATTATTCTTATAA
TCCTTATTTCACATTCATTAAGGAACAAATGACAGCAGGGATTTCAGGTATTTAGTGTGC
AGTAAAGAAGTTTTCAGATGGTTTTCGGTGTTTTGCTTTGGTGTAACATTGGATGTGCCA
TATTGCAAGGATGAATGGTATTCAGGGTTTAATTGCCCATTCTTAGTTTGACA
■■Homology search results ■■ -
sp_hit_id P12304
Definition sp|P12304|X92_TRYBB Protein X92 OS=Trypanosoma brucei brucei
Align length 39
Score (bit) 32.0
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917443|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_H06.
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12304|X92_TRYBB Protein X92 OS=Trypanosoma brucei brucei PE=...    32   1.4  
sp|A5VDC3|MURB_SPHWW UDP-N-acetylenolpyruvoylglucosamine reducta...    31   2.4  
sp|Q1GRY1|MURB_SPHAL UDP-N-acetylenolpyruvoylglucosamine reducta...    30   4.2  
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE...    30   4.2  
sp|Q6NWE1|PHF10_DANRE PHD finger protein 10 OS=Danio rerio GN=ph...    30   5.4  
sp|A5VI99|SYC_LACRD Cysteinyl-tRNA synthetase OS=Lactobacillus r...    29   9.3  

>sp|P12304|X92_TRYBB Protein X92 OS=Trypanosoma brucei brucei PE=4
           SV=1
          Length = 549

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -3

Query: 120 LATATCSLIFHSQNCLCHCAFAFAVMLGGGAFKCQSVSL 4
           L+ ATC  I     C+C C FAF    G G F C   SL
Sbjct: 485 LSPATCLHILRVCVCVCVCVFAFDGSKGAGQFYCVIGSL 523


>sp|A5VDC3|MURB_SPHWW UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM
           10273) GN=murB PE=3 SV=1
          Length = 306

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 36  RRASQQMRKRSGTNSFENGRSKSMWQWQDSA 128
           R ASQ +R R+G ++F+N +    WQ  D+A
Sbjct: 215 REASQPLRSRTGGSTFKNPQGHKAWQLVDAA 245


>sp|Q1GRY1|MURB_SPHAL UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Sphingopyxis alaskensis GN=murB PE=3 SV=1
          Length = 299

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 36  RRASQQMRKRSGTNSFENGRSKSMWQWQDSA 128
           R ASQ +R R+G ++F+N      WQ  D+A
Sbjct: 208 REASQPLRSRTGGSTFKNPAGHKAWQLVDAA 238


>sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1
           SV=2
          Length = 769

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 30/142 (21%), Positives = 42/142 (29%)
 Frame = -2

Query: 427 CNMAHPMLHQSKTPKTI*KLLYCTLNT*NPCCHLFLNECEXXXXXXIFGSGSTSFCRGHF 248
           C     + H S  P  +    YC  +T N         CE        G G     RG  
Sbjct: 512 CVCGQCLCHTSDVPGKLIYGQYCECDTIN---------CERYNGQVCGGPG-----RGLC 557

Query: 247 YCGFTRS*EPARHLYCSFTRSSEPASQAIGLTCRLASTCKALSCHCHMLFDLPFSKLFVP 68
           +CG  R         C   R++E       + C     C+   C CH             
Sbjct: 558 FCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHS------------ 605

Query: 67  LRFRICCDARRRGFQMPICEPC 2
                       G+Q+P+C+ C
Sbjct: 606 ------------GYQLPLCQEC 615


>sp|Q6NWE1|PHF10_DANRE PHD finger protein 10 OS=Danio rerio GN=phf10
           PE=2 SV=1
          Length = 408

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 200 TVKMPCWFL*ACKATVKMPSAKGSTPTPK 286
           ++ M CW    C   +  P  KG T TPK
Sbjct: 377 SIPMGCWVCDLCSKDISTPQKKGQTKTPK 405


>sp|A5VI99|SYC_LACRD Cysteinyl-tRNA synthetase OS=Lactobacillus
           reuteri (strain DSM 20016) GN=cysS PE=3 SV=1
          Length = 470

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 443 EYHSSLQYGTSNVTPKQNTENHLKTSLLHTKY 348
           +Y   +QY  +N+T  QN  NH++T+  +  Y
Sbjct: 302 QYRRPIQYSQANLTDAQNNLNHIQTAFDNLTY 333
tr_hit_id A4CD51
Definition tr|A4CD51|A4CD51_9GAMM Putative orphan protein OS=Pseudoalteromonas tunicata D2
Align length 40
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917443|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_H06.
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4CD51|A4CD51_9GAMM Putative orphan protein OS=Pseudoalteromo...    35   2.4  
tr|Q5H9Y7|Q5H9Y7_ORYSA P0650D04.15 protein OS=Oryza sativa GN=P0...    33   7.1  
tr|B7FKZ3|B7FKZ3_MEDTR Putative uncharacterized protein OS=Medic...    33   7.1  
tr|A3ARL8|A3ARL8_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  

>tr|A4CD51|A4CD51_9GAMM Putative orphan protein OS=Pseudoalteromonas
           tunicata D2 GN=PTD2_15682 PE=4 SV=1
          Length = 120

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 81  FENGRSKSMWQWQDSALQVEASLQVSPIAWLAGSDERVKL 200
           FEN      WQ  +   + +A +QV  + WLA SDE  KL
Sbjct: 55  FENNNKIECWQQSEITFRYKAHIQVDTLYWLAHSDEGKKL 94


>tr|Q5H9Y7|Q5H9Y7_ORYSA P0650D04.15 protein OS=Oryza sativa
           GN=P0650D04.15 PE=4 SV=1
          Length = 1579

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -1

Query: 434 SSLQYGTSNVTPKQNTENHLKTSLLHTKYLKSLLSFVP**M*NKDYKNNLWEWEYFLLPR 255
           +SL  G + +T K+N +NH+        Y KSL    P    N     N+WE E+FL P+
Sbjct: 777 TSLMDGDTELTSKENLKNHI------VNYSKSLFRADP--SLNIHLSPNVWEEEFFLKPK 828


>tr|B7FKZ3|B7FKZ3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 266

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -1

Query: 467 TKNGQLNPEYHSSLQYG------TSNVT-PKQNTENHLKTSLLHTKYLKSLLSFV 324
           T  GQ+N   H +LQ G      TSN + P+ NT NHL    +H    KSL+ FV
Sbjct: 154 TLGGQVN---HGNLQGGQVHPPDTSNSSQPRANTRNHLDMERVHISLRKSLIFFV 205


>tr|A3ARL8|A3ARL8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_013440 PE=4 SV=1
          Length = 1175

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -1

Query: 434 SSLQYGTSNVTPKQNTENHLKTSLLHTKYLKSLLSFVP**M*NKDYKNNLWEWEYFLLPR 255
           +SL  G + +T K+N +NH+        Y KSL    P    N     N+WE E+FL P+
Sbjct: 729 TSLMDGDTELTSKENLKNHI------VNYSKSLFRADP--SLNIHLSPNVWEEEFFLKPK 780