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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917449
Clone id YMU001_000101_A03
Library
Length 255
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCAATGCTCGGTCTATGATCTCTTTTGGGTCGTCAAGCATGGTAGTGCGCATCTTTTGG
TAGTCAAGATTATTCCAAGAATCTGTAGCACCAACTTGTGAAATAGCTCTCACCATCCTC
TTCCATGGATTAGTCCTCAACACATTGAATGCAATGTTGCACTCTATGAGAGTCCGCGCA
ATCTCCATCTCTGCAACTTTCTGTCGCTCCTTTACCCATGAGTGTACACGTGATGGCAAT
GTGGTTTGCCTTGGG
■■Homology search results ■■ -
sp_hit_id Q39565
Definition sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=Chlamydomonas reinhardtii
Align length 56
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917449|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_A03.
         (255 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=C...    34   0.26 
sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protei...    31   2.2  
sp|Q92J81|Y188_RICCN Uncharacterized protein RC0188 OS=Rickettsi...    30   4.8  
sp|Q650K4|KDUI_BACFR 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    29   8.2  
sp|Q5LJ16|KDUI_BACFN 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    29   8.2  
sp|Q8A2S4|KDUI1_BACTN 4-deoxy-L-threo-5-hexosulose-uronate ketol...    29   8.2  

>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm
            OS=Chlamydomonas reinhardtii GN=ODA4 PE=3 SV=1
          Length = 4568

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 209  ERQKVAEMEIARTLIECNIAF--NVLRTNPWKRMVRAISQVGATDSWNNLDYQKMR 48
            ER  +   E+ R+L+E ++    ++  T P +R+++A++      SW NL Y  +R
Sbjct: 4341 ERMNMLLAEMKRSLLELDLGLKGDLTMTEPMERLLKALATDAVPGSWRNLAYPSLR 4396


>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein
           kinase BUB1 beta OS=Homo sapiens GN=BUB1B PE=1 SV=3
          Length = 1050

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 6   CSVYDLFWVVKHGSAHLLVVKIIPRICSTNL*NSSHHPLPW 128
           C  Y LFWV    SA L V+K+            S  P+PW
Sbjct: 775 CEDYKLFWVAPRNSAELTVIKV------------SSQPVPW 803


>sp|Q92J81|Y188_RICCN Uncharacterized protein RC0188 OS=Rickettsia
           conorii GN=RC0188 PE=4 SV=1
          Length = 704

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 116 MVRAIS-QVGATDSWNNLDYQKMRTTM-LDDPKEIIDRAL 3
           M+ AI  QVG  DS  N DY+K+      +DPK++ID  L
Sbjct: 104 MIEAIERQVGLDDSRYNADYRKLEEIRNPNDPKKVIDAML 143


>sp|Q650K4|KDUI_BACFR 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Bacteroides fragilis GN=kduI PE=3
           SV=1
          Length = 280

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 64  SRLFQESVAPTCEI--ALTILFHGLVLNTLNAMLHSMRVRA 180
           +++    V PTC++   +T L  G V NT+ A +HS R+ A
Sbjct: 166 NKMLVNQVLPTCQLQMGMTELAPGSVWNTMPAHVHSRRMEA 206


>sp|Q5LJ16|KDUI_BACFN 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Bacteroides fragilis (strain ATCC
           25285 / NCTC 9343) GN=kduI PE=3 SV=1
          Length = 280

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 64  SRLFQESVAPTCEI--ALTILFHGLVLNTLNAMLHSMRVRA 180
           +++    V PTC++   +T L  G V NT+ A +HS R+ A
Sbjct: 166 NKMLVNQVLPTCQLQMGMTELAPGSVWNTMPAHVHSRRMEA 206


>sp|Q8A2S4|KDUI1_BACTN 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase 1 OS=Bacteroides thetaiotaomicron
           GN=kduI1 PE=3 SV=1
          Length = 280

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 64  SRLFQESVAPTCEI--ALTILFHGLVLNTLNAMLHSMRVRA 180
           +++    V PTC++   +T L  G V NT+ A +HS R+ A
Sbjct: 166 NKMLVNQVLPTCQLQMGMTELAPGSVWNTMPAHVHSRRMEA 206
tr_hit_id A8J1M5
Definition tr|A8J1M5|A8J1M5_CHLRE Flagellar outer dynein arm heavy chain beta OS=Chlamydomonas reinhardtii
Align length 56
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917449|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_A03.
         (255 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8J1M5|A8J1M5_CHLRE Flagellar outer dynein arm heavy chain be...    34   4.2  
tr|Q0E0X9|Q0E0X9_ORYSJ Os02g0513700 protein OS=Oryza sativa subs...    33   9.3  
tr|A3A7B9|A3A7B9_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.3  

>tr|A8J1M5|A8J1M5_CHLRE Flagellar outer dynein arm heavy chain beta
            OS=Chlamydomonas reinhardtii GN=ODA4 PE=4 SV=1
          Length = 4568

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 209  ERQKVAEMEIARTLIECNIAF--NVLRTNPWKRMVRAISQVGATDSWNNLDYQKMR 48
            ER  +   E+ R+L+E ++    ++  T P +R+++A++      SW NL Y  +R
Sbjct: 4341 ERMNMLLAEMKRSLLELDLGLKGDLTMTEPMERLLKALATDAVPGSWRNLAYPSLR 4396


>tr|Q0E0X9|Q0E0X9_ORYSJ Os02g0513700 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0513700 PE=4 SV=1
          Length = 628

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -2

Query: 182 IARTLIECNIAFNVLRTNPWKRMVRAISQVGATDSWNNLDYQKMRTTMLDDPKEIIDRAL 3
           IAR      I FNV R NP+ R     +   A   ++   Y K+RTT+L   K  ++R L
Sbjct: 175 IARMFYTAGIPFNVAR-NPYFRKAFMFACNNALGGYSPPSYNKLRTTLLVQEKTHVERLL 233


>tr|A3A7B9|A3A7B9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006691 PE=4 SV=1
          Length = 615

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -2

Query: 182 IARTLIECNIAFNVLRTNPWKRMVRAISQVGATDSWNNLDYQKMRTTMLDDPKEIIDRAL 3
           IAR      I FNV R NP+ R     +   A   ++   Y K+RTT+L   K  ++R L
Sbjct: 175 IARMFYTAGIPFNVAR-NPYFRKAFMFACNNALGGYSPPSYNKLRTTLLVQEKTHVERLL 233