BP917452
Clone id YMU001_000101_A08
Library
Length 355
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CATCCTGTACTTTGATTCATAATCCACAGGTGTAGTCTACCTGTAGCATGGTCTGTCTTC
TCAGATCTCTTTAAGAAAGGAAGCAATCCACATGAATGTAAGGCCCTCAGGTAACATGTG
TTTAGCTTGCCAGGACAGAAGTATTGGGGGGCCTAAACCACTCTTACTCCCTTTAAGGGT
TTCCTTCAATGCTCTAGCTTGATGGAACTACGAACACCTTCACAACCACAGCAGAAGTAT
TGACCTCGCTCCCGTCTTCCAAACATCATCGCAATTGTCATGTTAATCGGCGACAAACGC
CTTAGGAATGACGATGGAAGCACCTCCAAATTTGACTCAAAATAGCCACAGGCCT
■■Homology search results ■■ -
sp_hit_id Q9U357
Definition sp|Q9U357|PEN2_CAEEL Gamma-secretase subunit pen-2 OS=Caenorhabditis elegans
Align length 49
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917452|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_A08.
(355 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9U357|PEN2_CAEEL Gamma-secretase subunit pen-2 OS=Caenorhabd... 31 1.7
sp|O44199|RAD50_CAEEL DNA repair protein rad-50 OS=Caenorhabditi... 30 3.7
sp|Q5T9C2|F102A_HUMAN Protein FAM102A OS=Homo sapiens GN=FAM102A... 30 3.8

>sp|Q9U357|PEN2_CAEEL Gamma-secretase subunit pen-2
OS=Caenorhabditis elegans GN=pen-2 PE=2 SV=1
Length = 101

Score = 31.2 bits (69), Expect = 1.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +1

Query: 16 FIIHRCSLPVAWSV-----FSDLFKKGSNPHECKALR*HVFSLPGQKYW 147
F+I C LP+ W V FSD F K N H + + + S+ G +W
Sbjct: 19 FLIGACFLPLVWIVNTFWFFSDAFCKPINAHRRQIRKYVIASIVGSIFW 67


>sp|O44199|RAD50_CAEEL DNA repair protein rad-50 OS=Caenorhabditis
elegans GN=rad-50 PE=2 SV=1
Length = 1298

Score = 30.0 bits (66), Expect = 3.7
Identities = 22/59 (37%), Positives = 24/59 (40%)
Frame = -3

Query: 230 CGCEGVRSSIKLEH*RKPLKGVRVV*APQYFCPGKLNTCYLRALHSCGLLPFLKRSEKT 54
C CE S KLE+ RK LK R AP L Y+ S G P R KT
Sbjct: 618 CSCEAEEVSEKLENLRKRLKKARKDLAP-LSAKSNLYDSYIEESKSSGCCPLCDRDFKT 675


>sp|Q5T9C2|F102A_HUMAN Protein FAM102A OS=Homo sapiens GN=FAM102A
PE=2 SV=2
Length = 384

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2

Query: 227 HSRSIDLAPVFQTSSQLSC*SATNALGMTMEAPPNLTQNSHRP 355
HSRS L+ + + + SA+ LGMT+E P ++ HRP
Sbjct: 246 HSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEG-SEREHRP 287


tr_hit_id B5EHG1
Definition tr|B5EHG1|B5EHG1_GEOBB Cytochrome C family protein OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
Align length 82
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917452|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_A08.
(355 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B5EHG1|B5EHG1_GEOBB Cytochrome C family protein OS=Geobacter ... 34 3.2
tr|A8N6E8|A8N6E8_COPC7 Predicted protein OS=Coprinopsis cinerea ... 33 9.1

>tr|B5EHG1|B5EHG1_GEOBB Cytochrome C family protein OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=Gbem_1152 PE=3 SV=1
Length = 1009

Score = 34.3 bits (77), Expect = 3.2
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2

Query: 107 SGNMCLACQDRS---IGGPKPLLLPLRVSFNALA*WNYEHLHNHSRSIDLAPVFQTSSQL 277
+G CL+C DR+ IGG L+ PL VSFNA + HN++ + A +S +
Sbjct: 719 AGKGCLSCHDRNQRHIGGAGRLIAPLTVSFNA----ECSYCHNNAAVVQ-ANHLNMASHV 773

Query: 278 SC*SATNALGMTMEAPPNLTQN 343
+ A+ T P+ T N
Sbjct: 774 TTKGGDAAMACTTCHDPHGTSN 795


>tr|A8N6E8|A8N6E8_COPC7 Predicted protein OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_02052 PE=4
SV=1
Length = 107

Score = 32.7 bits (73), Expect = 9.1
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3

Query: 182 KPLKGVRVV*APQYFCPGKLNTCY-LRALHSCGLLPFLKRSEKTDHATGR 36
KP VV AP PG L Y +R H G+ P+L +S ++H TGR
Sbjct: 8 KPQLHTYVVWAPDCKDPGALERRYSVREQHLAGVAPYLNKSICSEHETGR 57