BP917455 |
Clone id |
YMU001_000101_A12 |
Library |
YMU01 |
Length |
476 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000101_A12. |
Accession |
BP917455 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3903Contig1 |
Sequence |
CAAGTGCCAGATCTGTGGCCCTTTCAAGAAGTTCGTCGACTCTTCAAAGACCCACTTGTC ACTGTTCCAGAAGATCAATGGGAACCCCAATGGGTTGGGCCTGATGAACAGGACTTGAGA AGTTTTCTGGTGGATCAGAATAGTTTTAATCCTGTGAGGGTAATGAAGGCTATTGACAGG ATCAAGACTATCAGAGACAAGTCACTCTAGAAAGAATGCCTTACAATGATTTATGCTAGT TTTGCATGATGCCCACAAAGCAGAAGGCCTGATATTCCTTTAGCTTGCCCTAATGAGATT AAGCAAGGCAAGTGTGCCAAGTAAACAACTAAAGACTAGACTACTAAGACAAGTCTTTTG ACTCAAGACAATGATATGTATAATTGGTATGTCTATTGCATGTGATAGCTAAAATTTACA GGAATGAGATTTCTCCTATTCCAAAGGGGTTAGATAAATTATATAGACTATGGTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SXQ6 |
Definition |
sp|Q9SXQ6|FEN1A_ORYSJ Flap endonuclease 1a OS=Oryza sativa subsp. japonica |
Align length |
68 |
Score (bit) |
71.6 |
E-value |
2.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S0B8 |
Definition |
tr|A9S0B8|A9S0B8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
68 |
Score (bit) |
84.0 |
E-value |
3.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917455|Adiantum capillus-veneris mRNA, clone: YMU001_000101_A12. (476 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S0B8|A9S0B8_PHYPA Predicted protein OS=Physcomitrella paten... 84 3e-15 tr|B6THM0|B6THM0_MAIZE Flap endonuclease 1a OS=Zea mays PE=2 SV=1 75 2e-12 tr|B4FHY0|B4FHY0_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12 tr|A9U328|A9U328_PHYPA Predicted protein OS=Physcomitrella paten... 75 2e-12 tr|Q0DGD0|Q0DGD0_ORYSJ Os05g0540100 protein OS=Oryza sativa subs... 72 2e-11 tr|B8AW67|B8AW67_ORYSI Putative uncharacterized protein OS=Oryza... 72 2e-11 tr|A6MZD5|A6MZD5_ORYSI Endonuclease putative (Fragment) OS=Oryza... 72 2e-11 tr|A7PRG5|A7PRG5_VITVI Chromosome chr14 scaffold_27, whole genom... 68 3e-10 tr|Q10B10|Q10B10_ORYSJ Os03g0834000 protein OS=Oryza sativa subs... 66 1e-09 tr|B8AMS4|B8AMS4_ORYSI Putative uncharacterized protein OS=Oryza... 66 1e-09 tr|Q53WJ9|Q53WJ9_ORYSJ Putative flap endonuclease 1 OS=Oryza sat... 63 6e-09 tr|O65251|O65251_ARATH F21E10.3 protein OS=Arabidopsis thaliana ... 62 1e-08 tr|Q54NU0|Q54NU0_DICDI XPG OS=Dictyostelium discoideum GN=repG P... 60 7e-08 tr|B6NWD9|B6NWD9_BRAFL Putative uncharacterized protein OS=Branc... 59 2e-07 tr|B6L221|B6L221_BRAFL Putative uncharacterized protein OS=Branc... 57 4e-07 tr|B0DSN9|B0DSN9_LACBS Predicted protein OS=Laccaria bicolor (st... 55 2e-06 tr|Q76F73|Q76F73_COPCI Flap endonuclease-1 OS=Coprinopsis cinere... 54 5e-06 tr|A8NQC2|A8NQC2_COPC7 Putative uncharacterized protein OS=Copri... 54 5e-06 tr|A8J2Z9|A8J2Z9_CHLRE Nuclease, Rad2 family OS=Chlamydomonas re... 52 1e-05 tr|B6KHT0|B6KHT0_TOXGO Flap endonuclease-1, putative OS=Toxoplas... 51 3e-05 tr|B7Q1M0|B7Q1M0_IXOSC Endonuclease, putative OS=Ixodes scapular... 51 3e-05 tr|B3RVF0|B3RVF0_TRIAD Putative uncharacterized protein OS=Trich... 51 3e-05 tr|B6JYI7|B6JYI7_SCHJP DNA-repair protein rad2 OS=Schizosaccharo... 51 3e-05 tr|B0EN90|B0EN90_ENTDI Flap endonuclease 1-A, putative OS=Entamo... 49 1e-04 tr|A5B9C8|A5B9C8_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04 tr|Q4DKQ5|Q4DKQ5_TRYCR Flap endonuclease-1 (FEN-1), putative OS=... 47 4e-04 tr|Q9N3T2|Q9N3T2_CAEEL Cell-death-related nuclease protein 1 (Ce... 47 5e-04 tr|Q4P1V1|Q4P1V1_USTMA Putative uncharacterized protein OS=Ustil... 47 5e-04 tr|A4HFE4|A4HFE4_LEIBR Flap endonuclease-1 (FEN-1), putative OS=... 46 8e-04 tr|B6QT52|B6QT52_PENMA Flap endonuclease Rad27, putative OS=Peni... 46 0.001
>tr|A9S0B8|A9S0B8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_207454 PE=4 SV=1 Length = 394
Score = 84.0 bits (206), Expect = 3e-15 Identities = 38/68 (55%), Positives = 50/68 (73%) Frame = +1
Query: 1 QVPDLWPFQEVRRLFKDPLVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDR 180 QVPD WP+QE RRLFK+PLVT PE E +W PD + LR LV++N FN RVMKAI++ Sbjct: 270 QVPDPWPYQEARRLFKEPLVTPPEKVPEFKWTAPDTEGLRQLLVEENGFNNDRVMKAIEK 329
Query: 181 IKTIRDKS 204 +K ++K+ Sbjct: 330 LKVAKNKA 337
>tr|B6THM0|B6THM0_MAIZE Flap endonuclease 1a OS=Zea mays PE=2 SV=1 Length = 379
Score = 74.7 bits (182), Expect = 2e-12 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = +1
Query: 1 QVPDLWPFQEVRRLFKDPLVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDR 180 Q+P+ WP+QE RRLFK+P VT+ D E +W PDE+ L SFLV N FN RV KAI++ Sbjct: 270 QIPEDWPYQEARRLFKEPNVTL--DIPELKWTAPDEEGLISFLVKDNGFNEDRVTKAIEK 327
Query: 181 IKTIRDKS 204 IK+ ++KS Sbjct: 328 IKSAKNKS 335
>tr|B4FHY0|B4FHY0_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 379
Score = 74.7 bits (182), Expect = 2e-12 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = +1
Query: 1 QVPDLWPFQEVRRLFKDPLVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDR 180 Q+P+ WP+QE RRLFK+P VT+ D E +W PDE+ L SFLV N FN RV KAI++ Sbjct: 270 QIPEDWPYQEARRLFKEPNVTL--DIPELKWTAPDEEGLISFLVKDNGFNEDRVTKAIEK 327
Query: 181 IKTIRDKS 204 IK+ ++KS Sbjct: 328 IKSAKNKS 335
>tr|A9U328|A9U328_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_200726 PE=4 SV=1 Length = 349
Score = 74.7 bits (182), Expect = 2e-12 Identities = 34/68 (50%), Positives = 47/68 (69%) Frame = +1
Query: 1 QVPDLWPFQEVRRLFKDPLVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDR 180 Q+PD WP++E RRLFK+PLVT ED + +W PD + L FLV++N FN RV AI + Sbjct: 270 QIPDPWPYEEARRLFKEPLVTQAEDVPDFKWTAPDAEGLIKFLVEENGFNHDRVQTAIKK 329
Query: 181 IKTIRDKS 204 I+ ++KS Sbjct: 330 IQLAKNKS 337
>tr|Q0DGD0|Q0DGD0_ORYSJ Os05g0540100 protein OS=Oryza sativa subsp. japonica GN=Os05g0540100 PE=4 SV=1 Length = 380
Score = 71.6 bits (174), Expect = 2e-11 Identities = 36/68 (52%), Positives = 48/68 (70%) Frame = +1
Query: 1 QVPDLWPFQEVRRLFKDPLVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDR 180 Q+P+ WP+QE RRLFK+P VT+ D E +W PDE+ L FLV +N FN RV KAI++ Sbjct: 270 QIPEDWPYQEARRLFKEPNVTL--DIPELKWNAPDEEGLVEFLVKENGFNQDRVTKAIEK 327
Query: 181 IKTIRDKS 204 IK ++KS Sbjct: 328 IKFAKNKS 335
>tr|B8AW67|B8AW67_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20807 PE=4 SV=1 Length = 380
Score = 71.6 bits (174), Expect = 2e-11 Identities = 36/68 (52%), Positives = 48/68 (70%) Frame = +1
Query: 1 QVPDLWPFQEVRRLFKDPLVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDR 180 Q+P+ WP+QE RRLFK+P VT+ D E +W PDE+ L FLV +N FN RV KAI++ Sbjct: 270 QIPEDWPYQEARRLFKEPNVTL--DIPELKWNAPDEEGLVQFLVKENGFNQDRVTKAIEK 327
Query: 181 IKTIRDKS 204 IK ++KS Sbjct: 328 IKFAKNKS 335
>tr|A6MZD5|A6MZD5_ORYSI Endonuclease putative (Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1 Length = 262
Score = 71.6 bits (174), Expect = 2e-11 Identities = 36/68 (52%), Positives = 48/68 (70%) Frame = +1
Query: 1 QVPDLWPFQEVRRLFKDPLVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDR 180 Q+P+ WP+QE RRLFK+P VT+ D E +W PDE+ L FLV +N FN RV KAI++ Sbjct: 152 QIPEDWPYQEARRLFKEPNVTL--DIPELKWNAPDEEGLVQFLVKENGFNQDRVTKAIEK 209
Query: 181 IKTIRDKS 204 IK ++KS Sbjct: 210 IKFAKNKS 217
>tr|A7PRG5|A7PRG5_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022496001 PE=4 SV=1 Length = 330
Score = 67.8 bits (164), Expect = 3e-10 Identities = 30/57 (52%), Positives = 41/57 (71%) Frame = +1
Query: 1 QVPDLWPFQEVRRLFKDPLVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKA 171 Q+PD WP+QE RRLFK+P V ++Q + +W PDE+ L +FLV++N FN RV KA Sbjct: 274 QIPDDWPYQEARRLFKEPQVFSDDEQLDIKWSAPDEEGLITFLVNENGFNSDRVTKA 330
>tr|Q10B10|Q10B10_ORYSJ Os03g0834000 protein OS=Oryza sativa subsp. japonica GN=Os03g0834000 PE=2 SV=1 Length = 412
Score = 65.9 bits (159), Expect = 1e-09 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Frame = +1
Query: 4 VPDLWPFQEVRRLFKDPLVT--VPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAID 177 VP+ WP+QEVR LFK+P V +P+ W P PDE+ L +FL +N+F+P RV+K+++ Sbjct: 271 VPEDWPYQEVRALFKEPNVCTDIPDFLWTP----PDEEGLINFLAAENNFSPDRVVKSVE 326
Query: 178 RIKTIRDK 201 +IK DK Sbjct: 327 KIKAANDK 334
>tr|B8AMS4|B8AMS4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14202 PE=4 SV=1 Length = 412
Score = 65.9 bits (159), Expect = 1e-09 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Frame = +1
Query: 4 VPDLWPFQEVRRLFKDPLVT--VPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAID 177 VP+ WP+QEVR LFK+P V +P+ W P PDE+ L +FL +N+F+P RV+K+++ Sbjct: 271 VPEDWPYQEVRALFKEPNVCTDIPDFLWTP----PDEEGLINFLAAENNFSPDRVVKSVE 326
Query: 178 RIKTIRDK 201 +IK DK Sbjct: 327 KIKAANDK 334
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