BP917456
Clone id YMU001_000101_B01
Library
Length 460
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCGAGCCCATCTCCCTAACTGGATCACGCATATAAGAAAGTTCCTTATTTCCCCTCGCCT
TTTCCATCCTTTCTCGCTCAGCAGAATATGCATTTTCTCTTTGGTTTCGCTTCCCACTAA
TGTCTTTCGAAACTGCATCCCCATAGTCCAGGTCACGATCACGGATACTATCATCCCTAT
CCCAATACCGTGAGTCCCTGTCTAAAAGCTCTTCATTTTGTACATGTGCCTTGCCAAAGT
GAAGAGCCCTCTTATTGTTATTGAGGGAATAATCTTCCCTGTCACCTTCCCACAAACTTT
GGCAGAGCCTTCTACTGTGCTTCTCTGATTCCAAAAAGAGAGTAGACTTGAACCATCCTG
CTTCTCAAACAAGCCTTGAGATTGAAATGATGGATTGGGACCTATTCGAGGGCCAGAGCG
AGCCACCGTACGGCCAGACTTCTTGCCTCTGTAGTGGGCT
■■Homology search results ■■ -
sp_hit_id P26410
Definition sp|P26410|HYPB_RHOCA Hydrogenase nickel incorporation protein hypB OS=Rhodobacter capsulatus
Align length 38
Score (bit) 35.0
E-value 0.16
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917456|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B01.
(460 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26410|HYPB_RHOCA Hydrogenase nickel incorporation protein hy... 35 0.16
sp|P06922|VE4_HPV16 Probable protein E4 OS=Human papillomavirus ... 33 0.45
sp|Q9QZA1|PHLA1_RAT Pleckstrin homology-like domain family A mem... 30 5.0
sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanog... 30 6.5
sp|P23803|ODD_DROME Protein odd-skipped OS=Drosophila melanogast... 30 6.5
sp|Q9W349|LOZEN_DROME Protein lozenge OS=Drosophila melanogaster... 30 6.5
sp|A4SJR0|GLMM_AERS4 Phosphoglucosamine mutase OS=Aeromonas salm... 29 8.5
sp|A0KNE8|GLMM_AERHH Phosphoglucosamine mutase OS=Aeromonas hydr... 29 8.5

>sp|P26410|HYPB_RHOCA Hydrogenase nickel incorporation protein hypB
OS=Rhodobacter capsulatus GN=hypB PE=3 SV=1
Length = 335

Score = 35.0 bits (79), Expect = 0.16
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1

Query: 136 HPHSPGHDHGYYHPYPNTVSPCLKALHFVHVPCQSEEP 249
HPH+ GHDHG+ H C +H H P +E P
Sbjct: 82 HPHAHGHDHGHSH------GACAHDIHLGHGPAGTEVP 113


>sp|P06922|VE4_HPV16 Probable protein E4 OS=Human papillomavirus
type 16 GN=E4 PE=3 SV=1
Length = 95

Score = 33.5 bits (75), Expect = 0.45
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2

Query: 212 FILYMCLAKVKSPLIVIEGIIFPVTFPQTLAEPS 313
++L++CLA K PL+ + G +P T P+ + +PS
Sbjct: 2 YVLHLCLAATKYPLLKLLGSTWPTTPPRPIPKPS 35


>sp|Q9QZA1|PHLA1_RAT Pleckstrin homology-like domain family A member
1 OS=Rattus norvegicus GN=Phlda1 PE=2 SV=1
Length = 263

Score = 30.0 bits (66), Expect = 5.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1

Query: 136 HPHSPGHDHGYYHPYPNTVSPCLKALH 216
HPH+ H H + HP+P+ + + LH
Sbjct: 221 HPHAHSHPHPHPHPHPHQLQHAHQPLH 247


>sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila
melanogaster GN=slou PE=2 SV=1
Length = 659

Score = 29.6 bits (65), Expect = 6.5
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1

Query: 64 PSFLAQQNMHFLFGFASH*CLSKLHPHSPGHDHGYYHPYPNTVSPCLKALHFVHVPCQS 240
P FLA H H HPHS H H + HP+P+ P A+ + P S
Sbjct: 192 PQFLAAAQQHMHHHQHQH-HQHPAHPHSHQHPHPHPHPHPH---PHPSAVFHLRAPSSS 246


>sp|P23803|ODD_DROME Protein odd-skipped OS=Drosophila melanogaster
GN=odd PE=1 SV=3
Length = 392

Score = 29.6 bits (65), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1

Query: 136 HPHSPGHDHGYYHPYPNTVSPCLKALHFVH 225
H H GH H + HP+P+ V P LH +H
Sbjct: 153 HHHHHGHPH-HPHPHPHHVRPYPAGLHSLH 181


>sp|Q9W349|LOZEN_DROME Protein lozenge OS=Drosophila melanogaster
GN=lz PE=2 SV=2
Length = 826

Score = 29.6 bits (65), Expect = 6.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1

Query: 136 HPHSPGHDHGYYHPYP 183
HPH+P H H ++ PYP
Sbjct: 129 HPHAPHHHHHHHPPYP 144


>sp|A4SJR0|GLMM_AERS4 Phosphoglucosamine mutase OS=Aeromonas
salmonicida (strain A449) GN=glmM PE=3 SV=1
Length = 444

Score = 29.3 bits (64), Expect = 8.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2

Query: 147 TMGMQFRKTLVGSETKEKMHILLSEKGWKRRGEIRNFLICVIQ 19
T+G+ F + VG +M ++EKGW+ GE +IC+ Q
Sbjct: 295 TLGIPFARAKVGDRYVLEM---MNEKGWRIGGENSGHIICLDQ 334


>sp|A0KNE8|GLMM_AERHH Phosphoglucosamine mutase OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=glmM PE=3 SV=1
Length = 444

Score = 29.3 bits (64), Expect = 8.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2

Query: 147 TMGMQFRKTLVGSETKEKMHILLSEKGWKRRGEIRNFLICVIQ 19
T+G+ F + VG +M ++EKGW+ GE +IC+ Q
Sbjct: 295 TLGIPFARAKVGDRYVLEM---MNEKGWRIGGENSGHIICLDQ 334


tr_hit_id A5GLN3
Definition tr|A5GLN3|A5GLN3_SYNPW Putative sirohydrochlorin cobaltochelatase OS=Synechococcus sp. (strain WH7803)
Align length 21
Score (bit) 37.0
E-value 0.49
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917456|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B01.
(460 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5GLN3|A5GLN3_SYNPW Putative sirohydrochlorin cobaltochelatas... 37 0.49
tr|B6N1F3|B6N1F3_BRAFL Putative uncharacterized protein OS=Branc... 35 1.9
tr|B6N1F0|B6N1F0_BRAFL Putative uncharacterized protein OS=Branc... 35 1.9
tr|A4CV74|A4CV74_SYNPV Putative uncharacterized protein OS=Synec... 34 3.2
tr|A7NMF4|A7NMF4_ROSCS Beta-mannosidase OS=Roseiflexus castenhol... 34 4.1
tr|A5UTL5|A5UTL5_ROSS1 Beta-mannosidase OS=Roseiflexus sp. (stra... 34 4.1
tr|B3MKM9|B3MKM9_DROAN GF13999 OS=Drosophila ananassae GN=GF1399... 34 4.1
tr|Q2U8S9|Q2U8S9_ASPOR Predicted protein OS=Aspergillus oryzae G... 34 4.1
tr|B8NE29|B8NE29_ASPFL Heat shock protein, putative OS=Aspergill... 34 4.1
tr|Q918U0|Q918U0_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|Q918T7|Q918T7_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|Q918T2|Q918T2_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|Q8B5P2|Q8B5P2_HPV16 Putative E4 protein (Fragment) OS=Human p... 33 5.4
tr|Q8B5N7|Q8B5N7_HPV16 Putative E4 protein (Fragment) OS=Human p... 33 5.4
tr|Q80MM0|Q80MM0_HPV16 E4 (Fragment) OS=Human papillomavirus typ... 33 5.4
tr|Q77QR2|Q77QR2_HPV16 E4 (Fragment) OS=Human papillomavirus typ... 33 5.4
tr|Q77GT0|Q77GT0_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|Q77GS9|Q77GS9_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|Q77GS8|Q77GS8_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|Q77GS7|Q77GS7_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|Q77GS6|Q77GS6_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|Q71C69|Q71C69_HPV16 Putative E4 protein (Fragment) OS=Human p... 33 5.4
tr|Q71BH5|Q71BH5_HPV16 Putative E4 protein (Fragment) OS=Human p... 33 5.4
tr|Q4VRR3|Q4VRR3_HPV16 E4 (Fragment) OS=Human papillomavirus typ... 33 5.4
tr|Q4VRQ5|Q4VRQ5_HPV16 E4 (Fragment) OS=Human papillomavirus typ... 33 5.4
tr|Q4VRN9|Q4VRN9_HPV16 E4 (Fragment) OS=Human papillomavirus typ... 33 5.4
tr|Q4VRN1|Q4VRN1_HPV16 E4 (Fragment) OS=Human papillomavirus typ... 33 5.4
tr|Q4VRM3|Q4VRM3_HPV16 E4 (Fragment) OS=Human papillomavirus typ... 33 5.4
tr|B5M8S6|B5M8S6_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4
tr|B1A8Y4|B1A8Y4_HPV16 E4 protein (Fragment) OS=Human papillomav... 33 5.4

>tr|A5GLN3|A5GLN3_SYNPW Putative sirohydrochlorin cobaltochelatase
OS=Synechococcus sp. (strain WH7803) GN=cbiX PE=4 SV=1
Length = 373

Score = 37.0 bits (84), Expect = 0.49
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1

Query: 136 HPHSPGHDHGYYHPYPNTVSP 198
H HS GH+HG++HPYP+ P
Sbjct: 334 HGHSHGHEHGHHHPYPHAEHP 354


>tr|B6N1F3|B6N1F3_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_89421 PE=4 SV=1
Length = 789

Score = 35.0 bits (79), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1

Query: 121 CLSKLHPHSPGHDHGYYHPYPNTVSPCLKALHFV 222
C S L P S G ++ Y+ PY N PC + L F+
Sbjct: 752 CRSFLIPQSTGRENAYHRPYHNMQGPCTRKLGFI 785


>tr|B6N1F0|B6N1F0_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_89418 PE=4 SV=1
Length = 779

Score = 35.0 bits (79), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1

Query: 121 CLSKLHPHSPGHDHGYYHPYPNTVSPCLKALHFV 222
C S L P S G ++ Y+ PY N PC + L F+
Sbjct: 742 CRSFLIPQSTGRENAYHRPYHNMQGPCTRKLGFI 775


>tr|A4CV74|A4CV74_SYNPV Putative uncharacterized protein
OS=Synechococcus sp. (strain WH7805) GN=WH7805_03852
PE=4 SV=1
Length = 285

Score = 34.3 bits (77), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1

Query: 124 LSKLHPHSPGHDHGYYHPYPNTVSP 198
L H H HDHG++HPYP+ P
Sbjct: 241 LGGAHHHHHNHDHGHHHPYPHADHP 265


>tr|A7NMF4|A7NMF4_ROSCS Beta-mannosidase OS=Roseiflexus castenholzii
(strain DSM 13941 / HLO8) GN=Rcas_2644 PE=4 SV=1
Length = 833

Score = 33.9 bits (76), Expect = 4.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -1

Query: 358 GWFKSTLFLESEKHSRRL----CQSLWEGDREDYSL 263
GWF+ ++ E+E RRL C +LW G+ EDY +
Sbjct: 417 GWFRDSVRAEAEAQVRRLRHHPCLALWCGNNEDYQI 452


>tr|A5UTL5|A5UTL5_ROSS1 Beta-mannosidase OS=Roseiflexus sp. (strain
RS-1) GN=RoseRS_1576 PE=4 SV=1
Length = 839

Score = 33.9 bits (76), Expect = 4.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -1

Query: 358 GWFKSTLFLESEKHSRRL----CQSLWEGDREDYSL 263
GWF+ ++ E+E RRL C +LW G+ EDY +
Sbjct: 423 GWFRDSVRAEAEAQVRRLRHHPCLALWCGNNEDYQI 458


>tr|B3MKM9|B3MKM9_DROAN GF13999 OS=Drosophila ananassae GN=GF13999
PE=4 SV=1
Length = 607

Score = 33.9 bits (76), Expect = 4.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1

Query: 136 HPHSPGHDHGYYHPYPNTVSPCL 204
HPHS H H + HP+P+T+S L
Sbjct: 462 HPHSHSHPHVHAHPHPHTISHAL 484


>tr|Q2U8S9|Q2U8S9_ASPOR Predicted protein OS=Aspergillus oryzae
GN=AO090701000306 PE=4 SV=1
Length = 379

Score = 33.9 bits (76), Expect = 4.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1

Query: 94 FLFGFASH*CLSKLHPHSPGHDHGY 168
+ FGFA H K HPH GH HG+
Sbjct: 97 YAFGFAGHHGRGKFHPHPHGHRHGH 121


>tr|B8NE29|B8NE29_ASPFL Heat shock protein, putative OS=Aspergillus
flavus NRRL3357 GN=AFLA_057600 PE=4 SV=1
Length = 339

Score = 33.9 bits (76), Expect = 4.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1

Query: 94 FLFGFASH*CLSKLHPHSPGHDHGY 168
+ FGFA H K HPH GH HG+
Sbjct: 57 YAFGFAGHHGRGKFHPHPHGHRHGH 81


>tr|Q918U0|Q918U0_HPV16 E4 protein (Fragment) OS=Human
papillomavirus type 16 PE=4 SV=1
Length = 95

Score = 33.5 bits (75), Expect = 5.4
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2

Query: 212 FILYMCLAKVKSPLIVIEGIIFPVTFPQTLAEPS 313
++L++CLA K PL+ + G +P T P+ + +PS
Sbjct: 2 YVLHLCLAATKYPLLKLLGSTWPTTPPRPIPKPS 35