BP917459 |
Clone id |
YMU001_000101_B04 |
Library |
YMU01 |
Length |
510 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000101_B04. |
Accession |
BP917459 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL404Contig1 |
Sequence |
CCAGCCATCACCTCTTTGGCATCTGCAAGCTGAGGAACCCATTTGGGTAATACAAAGCTG GTTGCTTCAACAACCTTCAAGCCTGAATCAGCTAATCTCTTGATAAGCTCCACCTTCACA TCAGTAGGAACTGCAGCCTTCTCGTTTTGTAAACCATCCCTTGGTCCAACCTCCACGATC TTCACAAATTTGGGAATACCTGTAACAATCTGCCCACCCTTTTTGGCAGATGATTTTAAC CTCCCAAATGATGCTACTGGCAGATCAGGTGATGTTGGTGAATTGCTCCAATCACTACCA GAGTCGGGCCCCACAAAAGTCTTTCTTTCAGATAACAATGTCCTTGACCTTCGCAAATAA ATTGAAGAACCAGTCCATCCCTGCTGATGCCCAGCCCCCCTCCGGTTATCCAAGCCTTCA CATGAACCATCGTGGCCTCTTTCCGGCATGACAAAATCCATGGAGTCCCTGTCACAGTGA CTCAATGTGCATCTGTCAATCTGAGAGGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8TB92 |
Definition |
sp|Q8TB92|HMGC2_HUMAN Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Homo sapiens |
Align length |
67 |
Score (bit) |
99.8 |
E-value |
7.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917459|Adiantum capillus-veneris mRNA, clone: YMU001_000101_B04. (510 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8TB92|HMGC2_HUMAN Probable 3-hydroxymethyl-3-methylglutaryl-... 100 7e-21 sp|Q8JZS7|HMGC2_MOUSE Probable 3-hydroxymethyl-3-methylglutaryl-... 98 2e-20 sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondri... 94 3e-19 sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochond... 94 5e-19 sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase OS=Gallus ... 92 1e-18 sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochond... 92 1e-18 sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochond... 91 2e-18 sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochond... 88 2e-17 sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochond... 88 2e-17 sp|A8WG57|HMGC2_DANRE Probable 3-hydroxymethyl-3-methylglutaryl-... 86 1e-16 sp|O34873|HMGCL_BACSU Hydroxymethylglutaryl-CoA lyase yngG OS=Ba... 70 7e-12 sp|P13703|HMGCL_PSEMV Hydroxymethylglutaryl-CoA lyase OS=Pseudom... 69 2e-11 sp|O04973|LEU1A_SOLPN 2-isopropylmalate synthase A OS=Solanum pe... 36 0.12 sp|O87198|HOSC_THET2 Homocitrate synthase OS=Thermus thermophilu... 35 0.16 sp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Ara... 33 0.78 sp|A1SJG2|FMT_NOCSJ Methionyl-tRNA formyltransferase OS=Nocardio... 33 0.78 sp|Q04893|YM96_YEAST Uncharacterized protein YMR317W OS=Saccharo... 33 1.0 sp|Q9C550|LEU12_ARATH 2-isopropylmalate synthase 2, chloroplasti... 33 1.0 sp|Q9LPR4|LEU11_ARATH 2-isopropylmalate synthase 1, chloroplasti... 32 1.3 sp|Q741F8|FMT_MYCPA Methionyl-tRNA formyltransferase OS=Mycobact... 32 1.3 sp|Q7M9W4|LEU1_WOLSU 2-isopropylmalate synthase OS=Wolinella suc... 32 1.7 sp|O04974|LEU1B_SOLPN 2-isopropylmalate synthase B OS=Solanum pe... 32 2.3 sp|Q12726|HOSM_YARLI Homocitrate synthase, mitochondrial OS=Yarr... 32 2.3 sp|Q32065|YCX9_CHLRE Uncharacterized 341.7 kDa protein in psbD-p... 31 2.9 sp|Q58787|CIMA_METJA (R)-citramalate synthase OS=Methanocaldococ... 31 2.9 sp|O43023|YGV9_SCHPO Uncharacterized zinc metalloprotease C354.0... 31 3.8 sp|Q8NX01|SUCD_STAAW Succinyl-CoA ligase [ADP-forming] subunit a... 31 3.9 sp|Q6G9W7|SUCD_STAAS Succinyl-CoA ligase [ADP-forming] subunit a... 31 3.9 sp|Q6GHI9|SUCD_STAAR Succinyl-CoA ligase [ADP-forming] subunit a... 31 3.9 sp|P99070|SUCD_STAAN Succinyl-CoA ligase [ADP-forming] subunit a... 31 3.9
>sp|Q8TB92|HMGC2_HUMAN Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Homo sapiens GN=HMGCLL1 PE=2 SV=3 Length = 370
Score = 99.8 bits (247), Expect = 7e-21 Identities = 45/67 (67%), Positives = 56/67 (83%) Frame = -2
Query: 206 VTGIPKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQL 27 ++G+P+FVKIVEVGPRDGLQNEK VPTD+K+E I RL+ +GL V+E TSFV +WVPQ+ Sbjct: 71 LSGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQM 130
Query: 26 ADAKEVM 6 AD EVM Sbjct: 131 ADHTEVM 137
>sp|Q8JZS7|HMGC2_MOUSE Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Mus musculus GN=Hmgcll1 PE=2 SV=1 Length = 343
Score = 98.2 bits (243), Expect = 2e-20 Identities = 46/75 (61%), Positives = 61/75 (81%) Frame = -2
Query: 230 SAKKGGQIVTGIPKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFV 51 +A++ Q+ G+P++VKIVEVGPRDGLQNEK VPTD+K+ELI +L+ +GL V+E TSFV Sbjct: 34 AAQEASQL-PGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFV 92
Query: 50 LPKWVPQLADAKEVM 6 +WVPQ+AD EVM Sbjct: 93 SSRWVPQMADHAEVM 107
>sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1 Length = 325
Score = 94.4 bits (233), Expect = 3e-19 Identities = 44/64 (68%), Positives = 55/64 (85%) Frame = -2
Query: 197 IPKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQLADA 18 +PK VKIVEVGPRDGLQNEK+ VPT VK++LI L+++GL V+EATSFV PKWVPQ+AD Sbjct: 29 LPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFVSPKWVPQMADH 88
Query: 17 KEVM 6 +V+ Sbjct: 89 SDVL 92
>sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2 Length = 325
Score = 93.6 bits (231), Expect = 5e-19 Identities = 46/63 (73%), Positives = 53/63 (84%) Frame = -2
Query: 194 PKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQLADAK 15 PK VKIVEVGPRDGLQNEK VPT VK++LI L+++GL VVEATSFV PKWVPQ+AD Sbjct: 30 PKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFVSPKWVPQMADHA 89
Query: 14 EVM 6 EV+ Sbjct: 90 EVL 92
>sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase OS=Gallus gallus GN=HMGCL PE=1 SV=1 Length = 298
Score = 92.4 bits (228), Expect = 1e-18 Identities = 43/63 (68%), Positives = 53/63 (84%) Frame = -2
Query: 194 PKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQLADAK 15 P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI L+++GL V+EATSFV P+WVPQ+AD Sbjct: 3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHA 62
Query: 14 EVM 6 EVM Sbjct: 63 EVM 65
>sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=1 Length = 325
Score = 92.0 bits (227), Expect = 1e-18 Identities = 43/64 (67%), Positives = 53/64 (82%) Frame = -2
Query: 197 IPKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQLADA 18 +PK VKIVEVGPRDGLQNEK+ VPT VK+ LI L+++GL V+EATSFV P WVPQ+AD Sbjct: 29 LPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSFVSPNWVPQMADH 88
Query: 17 KEVM 6 +V+ Sbjct: 89 SDVL 92
>sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1 Length = 325
Score = 91.3 bits (225), Expect = 2e-18 Identities = 44/64 (68%), Positives = 53/64 (82%) Frame = -2
Query: 197 IPKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQLADA 18 +PK VKIVEVGPRDGLQNEK V T VK++LI L+++GL V+EATSFV PKWVPQ+AD Sbjct: 29 LPKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSFVSPKWVPQMADH 88
Query: 17 KEVM 6 EV+ Sbjct: 89 AEVL 92
>sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1 Length = 325
Score = 88.2 bits (217), Expect = 2e-17 Identities = 42/64 (65%), Positives = 51/64 (79%) Frame = -2
Query: 197 IPKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQLADA 18 +PK VKIVEVGPRDGLQNEK V T VK++LI L+++GL V+E TSFV PKWVPQ+ D Sbjct: 29 LPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 88
Query: 17 KEVM 6 EV+ Sbjct: 89 TEVL 92
>sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2 Length = 325
Score = 88.2 bits (217), Expect = 2e-17 Identities = 42/64 (65%), Positives = 51/64 (79%) Frame = -2
Query: 197 IPKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQLADA 18 +PK VKIVEVGPRDGLQNEK V T VK++LI L+++GL V+E TSFV PKWVPQ+ D Sbjct: 29 LPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 88
Query: 17 KEVM 6 EV+ Sbjct: 89 TEVL 92
>sp|A8WG57|HMGC2_DANRE Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Danio rerio GN=hmgcll1 PE=2 SV=1 Length = 335
Score = 85.9 bits (211), Expect = 1e-16 Identities = 41/64 (64%), Positives = 51/64 (79%) Frame = -2
Query: 197 IPKFVKIVEVGPRDGLQNEKAAVPTDVKVELIKRLADSGLKVVEATSFVLPKWVPQLADA 18 +P +VKIVEVGPRDGLQNEK VPT+VK++LI L+ +GL V+EATSFV KWV Q+AD Sbjct: 39 LPVYVKIVEVGPRDGLQNEKEIVPTEVKIQLIDLLSQTGLPVIEATSFVSSKWVAQMADH 98
Query: 17 KEVM 6 V+ Sbjct: 99 TAVL 102
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8L7K2 |
Definition |
tr|Q8L7K2|Q8L7K2_ARATH Putative hydroxymethylglutaryl-CoA lyase OS=Arabidopsis thaliana |
Align length |
83 |
Score (bit) |
113.0 |
E-value |
5.0e-24 |
Report |
|