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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917464
Clone id YMU001_000101_B09
Library
Length 122
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTCAGGTTAAGTAAACGCATCACCATCATTTGTACTTGTTCTTTATCGGCAGCACCATA
TCCCACTACAGACTGTTTAATCTGGCGTGCAGTATATTCTGCAACTTGTAAATCTAAATT
CA
■■Homology search results ■■ -
sp_hit_id Q6FAQ2
Definition sp|Q6FAQ2|RUVC_ACIAD Crossover junction endodeoxyribonuclease ruvC OS=Acinetobacter sp. (strain ADP1)
Align length 40
Score (bit) 77.4
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917464|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B09.
         (122 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FAQ2|RUVC_ACIAD Crossover junction endodeoxyribonuclease ru...    77   2e-14
sp|A5WFD7|RUVC_PSYWF Crossover junction endodeoxyribonuclease ru...    60   3e-09
sp|Q1QCZ9|RUVC_PSYCK Crossover junction endodeoxyribonuclease ru...    59   1e-08
sp|Q4FTV0|RUVC_PSYA2 Crossover junction endodeoxyribonuclease ru...    58   1e-08
sp|Q3K7V8|RUVC_PSEPF Crossover junction endodeoxyribonuclease ru...    57   2e-08
sp|Q51424|RUVC_PSEAE Crossover junction endodeoxyribonuclease ru...    57   3e-08
sp|Q02IC7|RUVC_PSEAB Crossover junction endodeoxyribonuclease ru...    57   3e-08
sp|A6VA07|RUVC_PSEA7 Crossover junction endodeoxyribonuclease ru...    57   3e-08
sp|Q7NQB5|RUVC_CHRVO Crossover junction endodeoxyribonuclease ru...    56   5e-08
sp|A4XRR9|RUVC_PSEMY Crossover junction endodeoxyribonuclease ru...    56   6e-08
sp|A1K2Y3|RUVC_AZOSB Crossover junction endodeoxyribonuclease ru...    55   8e-08
sp|Q4K7D7|RUVC_PSEF5 Crossover junction endodeoxyribonuclease ru...    55   1e-07
sp|A4VNA5|RUVC_PSEU5 Crossover junction endodeoxyribonuclease ru...    55   1e-07
sp|Q5QYV0|RUVC_IDILO Crossover junction endodeoxyribonuclease ru...    55   1e-07
sp|Q21SX7|RUVC_RHOFD Crossover junction endodeoxyribonuclease ru...    54   2e-07
sp|Q13UC2|RUVC_BURXL Crossover junction endodeoxyribonuclease ru...    54   2e-07
sp|Q39XN8|RUVC_GEOMG Crossover junction endodeoxyribonuclease ru...    54   3e-07
sp|Q478E2|RUVC_DECAR Crossover junction endodeoxyribonuclease ru...    54   3e-07
sp|Q0BI81|RUVC_BURCM Crossover junction endodeoxyribonuclease ru...    54   3e-07
sp|A1SSV3|RUVC_PSYIN Crossover junction endodeoxyribonuclease ru...    53   4e-07
sp|Q4ZWL3|RUVC_PSEU2 Crossover junction endodeoxyribonuclease ru...    53   4e-07
sp|Q87Y33|RUVC_PSESM Crossover junction endodeoxyribonuclease ru...    53   4e-07
sp|Q48FC3|RUVC_PSE14 Crossover junction endodeoxyribonuclease ru...    53   4e-07
sp|Q2NTJ0|RUVC_SODGM Crossover junction endodeoxyribonuclease ru...    53   5e-07
sp|Q8Y233|RUVC_RALSO Crossover junction endodeoxyribonuclease ru...    53   5e-07
sp|Q66AU1|RUVC_YERPS Crossover junction endodeoxyribonuclease ru...    52   9e-07
sp|A4TJK2|RUVC_YERPP Crossover junction endodeoxyribonuclease ru...    52   9e-07
sp|Q1CJG7|RUVC_YERPN Crossover junction endodeoxyribonuclease ru...    52   9e-07
sp|Q8ZEU7|RUVC_YERPE Crossover junction endodeoxyribonuclease ru...    52   9e-07
sp|Q1C817|RUVC_YERPA Crossover junction endodeoxyribonuclease ru...    52   9e-07

>sp|Q6FAQ2|RUVC_ACIAD Crossover junction endodeoxyribonuclease ruvC
           OS=Acinetobacter sp. (strain ADP1) GN=ruvC PE=3 SV=2
          Length = 181

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = -3

Query: 120 NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           NLDL+VAEYTARQIKQSVVGYGAADKEQVQMMVMR+LNLT
Sbjct: 94  NLDLEVAEYTARQIKQSVVGYGAADKEQVQMMVMRILNLT 133


>sp|A5WFD7|RUVC_PSYWF Crossover junction endodeoxyribonuclease ruvC
           OS=Psychrobacter sp. (strain PRwf-1) GN=ruvC PE=3 SV=1
          Length = 194

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 30/38 (78%), Positives = 33/38 (86%)
 Frame = -3

Query: 117 LDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNL 4
           LDL+V+EYTARQIKQSV GYGAADK QVQ MV R+L L
Sbjct: 100 LDLEVSEYTARQIKQSVCGYGAADKVQVQEMVCRILKL 137


>sp|Q1QCZ9|RUVC_PSYCK Crossover junction endodeoxyribonuclease ruvC
           OS=Psychrobacter cryohalolentis (strain K5) GN=ruvC PE=3
           SV=1
          Length = 194

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 117 LDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNL 4
           LDL+V+EYTARQIKQ+V GYGAA KEQVQ MV R+L L
Sbjct: 100 LDLEVSEYTARQIKQAVCGYGAAAKEQVQEMVCRILTL 137


>sp|Q4FTV0|RUVC_PSYA2 Crossover junction endodeoxyribonuclease ruvC
           OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
           GN=ruvC PE=3 SV=1
          Length = 194

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 117 LDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNL 4
           LDL+V+EYTARQIKQ+V GYGAA KEQVQ MV R+L L
Sbjct: 100 LDLEVSEYTARQIKQAVCGYGAAAKEQVQDMVCRILTL 137


>sp|Q3K7V8|RUVC_PSEPF Crossover junction endodeoxyribonuclease ruvC
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=ruvC PE=3
           SV=1
          Length = 175

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = -3

Query: 111 LQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           L++AEYTA Q+KQ+VVG GAA+KEQVQMMVM +L LT
Sbjct: 98  LEIAEYTATQVKQAVVGTGAANKEQVQMMVMHMLKLT 134


>sp|Q51424|RUVC_PSEAE Crossover junction endodeoxyribonuclease ruvC
           OS=Pseudomonas aeruginosa GN=ruvC PE=3 SV=1
          Length = 174

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -3

Query: 111 LQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           L VAEYTA Q+KQ+VVG G ADK+QVQMMVM LL LT
Sbjct: 97  LSVAEYTASQVKQAVVGTGGADKQQVQMMVMHLLKLT 133


>sp|Q02IC7|RUVC_PSEAB Crossover junction endodeoxyribonuclease ruvC
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ruvC
           PE=3 SV=1
          Length = 174

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -3

Query: 111 LQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           L VAEYTA Q+KQ+VVG G ADK+QVQMMVM LL LT
Sbjct: 97  LSVAEYTASQVKQAVVGTGGADKQQVQMMVMHLLKLT 133


>sp|A6VA07|RUVC_PSEA7 Crossover junction endodeoxyribonuclease ruvC
           OS=Pseudomonas aeruginosa (strain PA7) GN=ruvC PE=3 SV=1
          Length = 174

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -3

Query: 111 LQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           L VAEYTA Q+KQ+VVG G ADK+QVQMMVM LL LT
Sbjct: 97  LSVAEYTASQVKQAVVGTGGADKQQVQMMVMHLLKLT 133


>sp|Q7NQB5|RUVC_CHRVO Crossover junction endodeoxyribonuclease ruvC
           OS=Chromobacterium violaceum GN=ruvC PE=3 SV=1
          Length = 176

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/38 (73%), Positives = 32/38 (84%)
 Frame = -3

Query: 114 DLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           DL VAEYTA Q+KQSVVG G A KEQVQ MV+R+LNL+
Sbjct: 98  DLPVAEYTALQVKQSVVGQGKAPKEQVQYMVVRMLNLS 135


>sp|A4XRR9|RUVC_PSEMY Crossover junction endodeoxyribonuclease ruvC
           OS=Pseudomonas mendocina (strain ymp) GN=ruvC PE=3 SV=1
          Length = 174

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = -3

Query: 111 LQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNL 4
           L+++EYTA Q+KQ+VVG GAADK+QVQMMVM LL L
Sbjct: 97  LEISEYTATQVKQAVVGTGAADKQQVQMMVMHLLKL 132
tr_hit_id B2HYY2
Definition tr|B2HYY2|B2HYY2_ACIBC Holliday junction resolvasome, endonuclease subunit OS=Acinetobacter baumannii (strain ACICU)
Align length 40
Score (bit) 79.3
E-value 9.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917464|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B09.
         (122 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2HYY2|B2HYY2_ACIBC Holliday junction resolvasome, endonuclea...    79   9e-14
tr|B0VR37|B0VR37_ACIBS Holliday junction nuclease OS=Acinetobact...    79   9e-14
tr|B0VCA5|B0VCA5_ACIBY Holliday junction nuclease OS=Acinetobact...    79   9e-14
tr|A3M4U7|A3M4U7_ACIBT Holliday junction nuclease OS=Acinetobact...    79   9e-14
tr|B7I4I7|B7I4I7_ACIBA Crossover junction endodeoxyribonuclease ...    79   9e-14
tr|B7H3S1|B7H3S1_ACIBA Crossover junction endodeoxyribonuclease ...    79   9e-14
tr|B7UXW7|B7UXW7_PSEAE Holliday junction resolvase RuvC OS=Pseud...    57   5e-07
tr|A6FET5|A6FET5_9GAMM Holliday junction resolvase OS=Moritella ...    57   5e-07
tr|A3LMK8|A3LMK8_PSEAE Holliday junction resolvase RuvC OS=Pseud...    57   5e-07
tr|A3L5M4|A3L5M4_PSEAE Holliday junction resolvase RuvC OS=Pseud...    57   5e-07
tr|A3WMN2|A3WMN2_9GAMM Holliday junction resolvasome, endonuclea...    57   6e-07
tr|B8KNA0|B8KNA0_9GAMM Crossover junction endodeoxyribonuclease ...    55   2e-06
tr|B2SYJ9|B2SYJ9_BURPP Crossover junction endodeoxyribonuclease ...    54   3e-06
tr|Q4IT50|Q4IT50_AZOVI Crossover junction endodeoxyribonuclease ...    54   3e-06
tr|B1G1Z3|B1G1Z3_9BURK Crossover junction endodeoxyribonuclease ...    54   3e-06
tr|Q1ZDZ9|Q1ZDZ9_9GAMM Crossover junction endodeoxyribonuclease ...    54   4e-06
tr|B1YTE1|B1YTE1_BURA4 Crossover junction endodeoxyribonuclease ...    54   5e-06
tr|B5WHS8|B5WHS8_9BURK Crossover junction endodeoxyribonuclease ...    54   5e-06
tr|B1T8H2|B1T8H2_9BURK Crossover junction endodeoxyribonuclease ...    54   5e-06
tr|B1FF99|B1FF99_9BURK Crossover junction endodeoxyribonuclease ...    54   5e-06
tr|B2UFL4|B2UFL4_RALPJ Crossover junction endodeoxyribonuclease ...    53   7e-06
tr|A7CF76|A7CF76_BURPI Crossover junction endodeoxyribonuclease ...    53   7e-06
tr|A0YEJ3|A0YEJ3_9GAMM Holliday junction resolvase OS=marine gam...    53   7e-06
tr|Q0W1R8|Q0W1R8_UNCMA Holliday junction resolvasome, endonuclea...    53   7e-06
tr|A8PMB2|A8PMB2_9COXI Crossover junction endodeoxyribonuclease ...    52   1e-05
tr|B2K322|B2K322_YERPB Crossover junction endodeoxyribonuclease ...    52   1e-05
tr|B1JLL2|B1JLL2_YERPY Crossover junction endodeoxyribonuclease ...    52   1e-05
tr|A9QYX5|A9QYX5_YERPG Crossover junction endodeoxyribonuclease ...    52   1e-05
tr|A2S596|A2S596_BURM9 Crossover junction endodeoxyribonuclease ...    52   1e-05
tr|A1V066|A1V066_BURMS Crossover junction endodeoxyribonuclease ...    52   1e-05

>tr|B2HYY2|B2HYY2_ACIBC Holliday junction resolvasome, endonuclease
           subunit OS=Acinetobacter baumannii (strain ACICU)
           GN=ACICU_01557 PE=4 SV=1
          Length = 181

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = -3

Query: 120 NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT
Sbjct: 94  NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 133


>tr|B0VR37|B0VR37_ACIBS Holliday junction nuclease OS=Acinetobacter
           baumannii (strain SDF) GN=ruvC PE=4 SV=1
          Length = 181

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = -3

Query: 120 NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT
Sbjct: 94  NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 133


>tr|B0VCA5|B0VCA5_ACIBY Holliday junction nuclease OS=Acinetobacter
           baumannii (strain AYE) GN=ruvC PE=4 SV=1
          Length = 181

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = -3

Query: 120 NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT
Sbjct: 94  NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 133


>tr|A3M4U7|A3M4U7_ACIBT Holliday junction nuclease OS=Acinetobacter
           baumannii (strain ATCC 17978 / NCDC KC 755) GN=A1S_1514
           PE=4 SV=2
          Length = 181

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = -3

Query: 120 NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT
Sbjct: 94  NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 133


>tr|B7I4I7|B7I4I7_ACIBA Crossover junction endodeoxyribonuclease
           RuvC OS=Acinetobacter baumannii AB0057 GN=ruvC PE=4 SV=1
          Length = 181

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = -3

Query: 120 NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT
Sbjct: 94  NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 133


>tr|B7H3S1|B7H3S1_ACIBA Crossover junction endodeoxyribonuclease
           RuvC OS=Acinetobacter baumannii AB307-0294 GN=ruvC PE=4
           SV=1
          Length = 181

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = -3

Query: 120 NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT
Sbjct: 94  NLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 133


>tr|B7UXW7|B7UXW7_PSEAE Holliday junction resolvase RuvC
           OS=Pseudomonas aeruginosa LESB58 GN=ruvC PE=4 SV=1
          Length = 174

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -3

Query: 111 LQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           L VAEYTA Q+KQ+VVG G ADK+QVQMMVM LL LT
Sbjct: 97  LSVAEYTASQVKQAVVGTGGADKQQVQMMVMHLLKLT 133


>tr|A6FET5|A6FET5_9GAMM Holliday junction resolvase OS=Moritella sp.
           PE36 GN=ruvC PE=4 SV=1
          Length = 173

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -3

Query: 114 DLQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNL 4
           DL+V EYTARQIKQ+VVG G ADKEQVQ MV+ LL L
Sbjct: 96  DLEVGEYTARQIKQAVVGNGGADKEQVQQMVVNLLKL 132


>tr|A3LMK8|A3LMK8_PSEAE Holliday junction resolvase RuvC
           OS=Pseudomonas aeruginosa 2192 GN=PA2G_06140 PE=4 SV=1
          Length = 174

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -3

Query: 111 LQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           L VAEYTA Q+KQ+VVG G ADK+QVQMMVM LL LT
Sbjct: 97  LSVAEYTASQVKQAVVGTGGADKQQVQMMVMHLLKLT 133


>tr|A3L5M4|A3L5M4_PSEAE Holliday junction resolvase RuvC
           OS=Pseudomonas aeruginosa C3719 GN=PACG_05510 PE=4 SV=1
          Length = 174

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -3

Query: 111 LQVAEYTARQIKQSVVGYGAADKEQVQMMVMRLLNLT 1
           L VAEYTA Q+KQ+VVG G ADK+QVQMMVM LL LT
Sbjct: 97  LSVAEYTASQVKQAVVGTGGADKQQVQMMVMHLLKLT 133