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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917465
Clone id YMU001_000101_B10
Library
Length 217
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAATCTTCTCCATCAGCATTTGACACAGCATAATCTTGCATGTCCTCAAGCGCATTGGC
AGGCTGCAACTCCTCTGTATGGGCATCCATCCAGATCTCAGCTAACATTGTTGAGTATCT
CTCTGTTTGACCAACAAGAAAATCAAGATGCTTGTCCAGCGCTTTTTTCTTGATGCCTTC
AAGCACCATTTGGTGCTTATACATAATCAGCTTTTCA
■■Homology search results ■■ -
sp_hit_id Q6ZRS2
Definition sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens
Align length 40
Score (bit) 52.0
E-value 9.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917465|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B10.
         (217 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE...    52   9e-07
sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster G...    50   5e-06
sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN...    32   1.3  
sp|Q31IY8|RPOC_THICR DNA-directed RNA polymerase subunit beta' O...    30   2.8  
sp|A5IZ52|RPOC_MYCAP DNA-directed RNA polymerase subunit beta' O...    30   3.7  
sp|P62135|RAD50_NANEQ DNA double-strand break repair rad50 ATPas...    29   8.3  
sp|Q59KI4|INO80_CANAL Putative DNA helicase INO80 OS=Candida alb...    29   8.3  
sp|Q9UBG3|CRNN_HUMAN Cornulin OS=Homo sapiens GN=CRNN PE=1 SV=1        29   8.3  

>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1
           SV=2
          Length = 3230

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 97
           EK++ +K Q  LE  +KKALD HLDF+VGQTE+YS +L++
Sbjct: 210 EKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQ 249


>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster
           GN=dom PE=1 SV=2
          Length = 3198

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 22/40 (55%), Positives = 30/40 (75%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 97
           EKL+ YKHQ  +E  +K+ALD+HL F+V QTE++S  L E
Sbjct: 593 EKLVEYKHQTKIEEKRKQALDQHLSFIVDQTEKFSQQLVE 632


>sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans
           GN=ssl-1 PE=2 SV=4
          Length = 2395

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 97
           +K++  + + VLE   +KA +KHL F++GQ +  S ++ E
Sbjct: 313 DKVVDIRAKEVLESRLRKARNKHLMFVIGQVDEMSNIVQE 352


>sp|Q31IY8|RPOC_THICR DNA-directed RNA polymerase subunit beta'
           OS=Thiomicrospira crunogena (strain XCL-2) GN=rpoC PE=3
           SV=1
          Length = 1408

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = -2

Query: 138 LVGQTERYSTMLAEIWMDAHTEELQPANALEDMQDYAVSNADGED 4
           LV + ERY+ ++ +IW  +HT EL   + +E++Q   V++A+G +
Sbjct: 672 LVTEGERYNKVV-DIW--SHTNELVTKSMMEELQYETVTDAEGNE 713


>sp|A5IZ52|RPOC_MYCAP DNA-directed RNA polymerase subunit beta'
           OS=Mycoplasma agalactiae (strain PG2) GN=rpoC PE=3 SV=1
          Length = 1478

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
 Frame = -2

Query: 216 EKLIMYKHQMVLE--GIKKKALDKHLDFLVGQTERYSTMLAEI--WMDAHTEELQ-PANA 52
           EKLI YK  +VLE  G+KK   +  +D +      Y+  L E+    +  TEE +  + A
Sbjct: 147 EKLIYYKSHIVLEDGGLKKLQKNAIID-ISDAAIIYADALEELKERFEKDTEEYEIISEA 205

Query: 51  LEDMQDYAVSNADGEDF 1
           L +++ YAVS   G+D+
Sbjct: 206 LAELESYAVSQT-GQDY 221


>sp|P62135|RAD50_NANEQ DNA double-strand break repair rad50 ATPase
           OS=Nanoarchaeum equitans GN=rad50 PE=3 SV=1
          Length = 786

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -2

Query: 174 IKKKALDKHLDFLVGQTERYSTMLAE 97
           IKK AL++ L+ L+ + ERY+++L E
Sbjct: 547 IKKPALERELNLLLKELERYNSLLKE 572


>sp|Q59KI4|INO80_CANAL Putative DNA helicase INO80 OS=Candida
           albicans GN=INO80 PE=3 SV=1
          Length = 1387

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAHTEELQPANALEDMQ 37
           EK ++ K +   E  + K   + L+FL+ QTE YS  + +      T+EL+  NA ++++
Sbjct: 520 EKELLDKAKKEEEEREAKRQSRKLNFLITQTELYSHFIGK---KIKTDELEGTNADDNLK 576

Query: 36  DYAVSNAD 13
                + D
Sbjct: 577 SNTKEHLD 584


>sp|Q9UBG3|CRNN_HUMAN Cornulin OS=Homo sapiens GN=CRNN PE=1 SV=1
          Length = 495

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 132 GQTERYSTMLAEIWMDAHTEELQPANALEDMQDYAVSNADGED 4
           GQ +R  T++ E W+D H+ E       +     +VS+A G+D
Sbjct: 429 GQGDRQPTVVGEEWVDDHSRETVILRLDQGNLHTSVSSAQGQD 471
tr_hit_id A9S832
Definition tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 65.5
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917465|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B10.
         (217 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family DNA-dep...    65   1e-09
tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early fl...    65   2e-09
tr|A9U2Y8|A9U2Y8_PHYPA SWR1 complex protein, SNF2 family DNA-dep...    64   5e-09
tr|Q9LTV5|Q9LTV5_ARATH Helicase-like protein OS=Arabidopsis thal...    63   6e-09
tr|Q7X9V2|Q7X9V2_ARATH Photoperiod independent early flowering1 ...    63   6e-09
tr|A5AP91|A5AP91_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|B8AGS2|B8AGS2_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|A3AAA0|A3AAA0_ORYSJ Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|B5E1L0|B5E1L0_DROPS GA24314 OS=Drosophila pseudoobscura pseud...    53   9e-06
tr|B4GI08|B4GI08_DROPE GL16840 OS=Drosophila persimilis GN=GL168...    53   9e-06
tr|Q3U4M6|Q3U4M6_MOUSE Putative uncharacterized protein OS=Mus m...    52   1e-05
tr|Q6P4A2|Q6P4A2_HUMAN SRCAP protein (Fragment) OS=Homo sapiens ...    52   1e-05
tr|B0JZA6|B0JZA6_HUMAN SRCAP protein OS=Homo sapiens GN=SRCAP PE...    52   1e-05
tr|Q4SFE5|Q4SFE5_TETNG Chromosome 2 SCAF14604, whole genome shot...    51   3e-05
tr|B4P902|B4P902_DROYA Domino OS=Drosophila yakuba GN=Dyak\dom P...    51   3e-05
tr|B4MJU2|B4MJU2_DROWI GK20897 OS=Drosophila willistoni GN=GK208...    51   3e-05
tr|B4LLH7|B4LLH7_DROVI GJ20044 OS=Drosophila virilis GN=GJ20044 ...    51   3e-05
tr|B4KRF8|B4KRF8_DROMO GI19071 OS=Drosophila mojavensis GN=GI190...    51   3e-05
tr|B4J6Z7|B4J6Z7_DROGR GH20710 OS=Drosophila grimshawi GN=GH2071...    51   3e-05
tr|B3NJL6|B3NJL6_DROER GG22110 OS=Drosophila erecta GN=GG22110 P...    51   3e-05
tr|B3MBX4|B3MBX4_DROAN GF12812 OS=Drosophila ananassae GN=GF1281...    51   3e-05
tr|Q8MLW2|Q8MLW2_DROME Domino, isoform D OS=Drosophila melanogas...    50   7e-05
tr|B5RJR0|B5RJR0_DROME LP03212p (Fragment) OS=Drosophila melanog...    50   7e-05
tr|B5RJJ7|B5RJJ7_DROME LD35056p (Fragment) OS=Drosophila melanog...    50   7e-05
tr|B4QG22|B4QG22_DROSI GD11588 OS=Drosophila simulans GN=GD11588...    50   7e-05
tr|B4I7P3|B4I7P3_DROSE GM15831 OS=Drosophila sechellia GN=GM1583...    50   7e-05
tr|Q28EN0|Q28EN0_XENTR Novel protein (Fragment) OS=Xenopus tropi...    49   1e-04
tr|B7QDK0|B7QDK0_IXOSC E1A-binding protein p400, putative (Fragm...    48   3e-04
tr|Q7Q5W6|Q7Q5W6_ANOGA AGAP006165-PA OS=Anopheles gambiae GN=AGA...    46   8e-04
tr|Q17L58|Q17L58_AEDAE E1a binding protein P400 OS=Aedes aegypti...    46   8e-04

>tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family
           DNA-dependent ATPase (Fragment) OS=Physcomitrella patens
           subsp. patens GN=CHR1515 PE=4 SV=1
          Length = 1780

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 32/47 (68%), Positives = 38/47 (80%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAHT 76
           +KL+ YK Q+++E  KKKALDKHLDFL+GQTERYSTMLAE   D  T
Sbjct: 95  DKLVSYKQQLLVEERKKKALDKHLDFLLGQTERYSTMLAENLADNTT 141


>tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early
           flowering1 OS=Oryza sativa subsp. japonica
           GN=OJ1743_B12.28 PE=4 SV=1
          Length = 2021

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/48 (66%), Positives = 38/48 (79%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAHTE 73
           EKL+ YK+Q+ LE  KKKALDK LDFL+GQTERYSTMLAE  +D   +
Sbjct: 109 EKLVFYKNQLELEERKKKALDKQLDFLLGQTERYSTMLAENLVDVRLQ 156


>tr|A9U2Y8|A9U2Y8_PHYPA SWR1 complex protein, SNF2 family
           DNA-dependent ATPase (Fragment) OS=Physcomitrella patens
           subsp. patens GN=CHR1545 PE=4 SV=1
          Length = 1727

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTE-RYSTMLAEIWMDAHTE-ELQPANAL 49
           EKL+ YK Q+++E  KKKALDKHLDFL+GQTE RYSTMLAE   D  T  ELQ +  L
Sbjct: 82  EKLVSYKQQLLVEERKKKALDKHLDFLLGQTESRYSTMLAENLADTTTTYELQISQPL 139


>tr|Q9LTV5|Q9LTV5_ARATH Helicase-like protein OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 2061

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 29/40 (72%), Positives = 35/40 (87%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 97
           EKL++YKHQ+V    KKKA+DK L+FL+GQTERYSTMLAE
Sbjct: 121 EKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAE 160


>tr|Q7X9V2|Q7X9V2_ARATH Photoperiod independent early flowering1
           OS=Arabidopsis thaliana GN=PIE1 PE=1 SV=1
          Length = 2055

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 29/40 (72%), Positives = 35/40 (87%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 97
           EKL++YKHQ+V    KKKA+DK L+FL+GQTERYSTMLAE
Sbjct: 121 EKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAE 160


>tr|A5AP91|A5AP91_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028854 PE=4 SV=1
          Length = 526

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 30/45 (66%), Positives = 36/45 (80%)
 Frame = -2

Query: 213 KLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAH 79
           K ++YKHQM L+  KKKALDK L+FL+GQTERYSTMLAE   D +
Sbjct: 141 KDVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLADTY 185


>tr|B8AGS2|B8AGS2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08529 PE=4 SV=1
          Length = 1765

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = -2

Query: 207 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAHTE 73
           + YK+Q+ LE  KKKALDK LDFL+GQTERYSTMLAE  +D   +
Sbjct: 85  VFYKNQLELEERKKKALDKQLDFLLGQTERYSTMLAENLVDVRLQ 129


>tr|A3AAA0|A3AAA0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007722 PE=4 SV=1
          Length = 2202

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = -2

Query: 207 IMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEIWMDAHTE 73
           + YK+Q+ LE  KKKALDK LDFL+GQTERYSTMLAE  +D   +
Sbjct: 149 VFYKNQLELEERKKKALDKQLDFLLGQTERYSTMLAENLVDVRLQ 193


>tr|B5E1L0|B5E1L0_DROPS GA24314 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA24314 PE=4 SV=1
          Length = 3240

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 97
           EKL+ YKHQ  +E  +K+ALD+HL+F+VGQTE++S  L E
Sbjct: 592 EKLVEYKHQTKIEEKRKQALDQHLNFIVGQTEKFSQQLVE 631


>tr|B4GI08|B4GI08_DROPE GL16840 OS=Drosophila persimilis GN=GL16840
           PE=4 SV=1
          Length = 1076

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = -2

Query: 216 EKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 97
           EKL+ YKHQ  +E  +K+ALD+HL+F+VGQTE++S  L E
Sbjct: 604 EKLVEYKHQTKIEEKRKQALDQHLNFIVGQTEKFSQQLVE 643