BP917466
Clone id YMU001_000101_B11
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GCTTAATGCGGATTTTAAGGCAAAAGAGGCTCAAGCATGGTACCGATGGAATTACAAGCA
AAGGTATCCAAAGTTCTCTATCAATGTCCTGAAATGTAGTATTCGAATTGCTCTAGAAGC
CGGTCCAGACGTCTCATCAAATGGAGCCCCGATGTGTGAGATATGGCAGTTTAAAGTTAG
AAAGTTTAACAGATTTGAGACGGACAAGGCCAAAGAGGATGTCAACAAATAGATGTGTGA
AGCTTGAATTATGGAGCATGATTGTCTTTTTGGATTTCTAATCAGAGCTCTGGATAGCAA
GTTATGGCAAGTTGAAGATTTACCGAGGACCAGTTATGGGCCAAGTTGACTACATGGAGA
GTCGTGCCATCTGGCATTTTTTGGGCCTTGCCGGGGTTCTAGAGGGTGATGCACTTCATG
TAGAGTTGATAGGAGTTGATTGTGTGTCAATTGTGTTCCCGATCAGCAAGATACGATGGG
TT
■■Homology search results ■■ -
sp_hit_id P04937
Definition sp|P04937|FINC_RAT Fibronectin OS=Rattus norvegicus
Align length 56
Score (bit) 32.7
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917466|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B11.
(482 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P04937|FINC_RAT Fibronectin OS=Rattus norvegicus GN=Fn1 PE=1 ... 33 0.89
sp|P16756|UL14_HCMVA Uncharacterized protein UL14 OS=Human cytom... 32 2.0
sp|A6UNU0|AROE_METVS Shikimate dehydrogenase OS=Methanococcus va... 29 9.8

>sp|P04937|FINC_RAT Fibronectin OS=Rattus norvegicus GN=Fn1 PE=1 SV=2
Length = 2477

Score = 32.7 bits (73), Expect = 0.89
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -1

Query: 416 KCITL*NPGKAQKMPDGTTLHVVN----LAHNWSSVNLQLAITCYPEL*LEIQKDN 261
+C PG A+ PDGTT H N H ++ N+ I C+ L ++ +D+
Sbjct: 2419 RCDNCRRPGAAEPSPDGTTGHTYNQYTQRYHQRTNTNVNCPIECFMPLDVQADRDD 2474


>sp|P16756|UL14_HCMVA Uncharacterized protein UL14 OS=Human
cytomegalovirus (strain AD169) GN=UL14 PE=4 SV=2
Length = 327

Score = 31.6 bits (70), Expect = 2.0
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1

Query: 398 NPGKAQKMPDGTTLHVVNL--AHNWSSVNLQLAITCYPEL 285
NPG Q +P G L V + AH+W V++++ + +PE+
Sbjct: 47 NPGSPQLLPYGDRLEVACIFPAHDWPEVSIRVHLCYWPEI 86


>sp|A6UNU0|AROE_METVS Shikimate dehydrogenase OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=aroE
PE=3 SV=1
Length = 284

Score = 29.3 bits (64), Expect = 9.8
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = -2

Query: 283 D*KSKKTIMLHNSSFTHLFVDIL---FGLVRLKSVKLSNFK----LPYLTHRGSI**DVW 125
D SK I L N+ + +DI+ F V LK K K L L ++G++ ++W
Sbjct: 205 DVNSKPVIPLKNAKNDAIIMDIIYNPFEPVFLKEAKKYGLKTLNGLGMLIYQGAVSFEIW 264

Query: 124 TGF*SNSN 101
TGF ++N
Sbjct: 265 TGFKPDTN 272


tr_hit_id Q03BH9
Definition tr|Q03BH9|Q03BH9_LACC3 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) OS=Lactobacillus casei (strain ATCC 334)
Align length 58
Score (bit) 33.1
E-value 7.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917466|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B11.
(482 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q03BH9|Q03BH9_LACC3 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)... 33 7.0
tr|B3W8G6|B3W8G6_LACCB Endolysin OS=Lactobacillus casei (strain ... 33 7.0
tr|Q4K7N3|Q4K7N3_PSEF5 Putative uncharacterized protein OS=Pseud... 33 9.2
tr|B3WDH9|B3WDH9_LACCB Endolysin OS=Lactobacillus casei (strain ... 33 9.2
tr|A2FKA7|A2FKA7_TRIVA Phosphofructokinase family protein OS=Tri... 33 9.2

>tr|Q03BH9|Q03BH9_LACC3 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
OS=Lactobacillus casei (strain ATCC 334) GN=LSEI_0599
PE=4 SV=1
Length = 323

Score = 33.1 bits (74), Expect = 7.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3

Query: 264 VFLDF*SELWIASYGKLKIYRGPVMGQVDYMESRAIWHFLGLAGVLEGDALHVELIGV 437
+ +F + LWIA+Y P G M+ AIW + G+ +G +++L+GV
Sbjct: 107 ILKEFPNSLWIAAYRDYLPTTKPDYGYFPSMDGVAIWQYTSAFGLSQGLDGNIDLLGV 164


>tr|B3W8G6|B3W8G6_LACCB Endolysin OS=Lactobacillus casei (strain
BL23) GN=ps356 PE=4 SV=1
Length = 266

Score = 33.1 bits (74), Expect = 7.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3

Query: 264 VFLDF*SELWIASYGKLKIYRGPVMGQVDYMESRAIWHFLGLAGVLEGDALHVELIGV 437
+ +F + LWIA+Y P G M+ AIW + G+ +G +++L+GV
Sbjct: 50 ILKEFPNSLWIAAYRDYLPTTKPDYGYFPSMDGVAIWQYTSAFGLSQGLDGNIDLLGV 107


>tr|Q4K7N3|Q4K7N3_PSEF5 Putative uncharacterized protein
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=PFL_4667 PE=4 SV=1
Length = 208

Score = 32.7 bits (73), Expect = 9.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2

Query: 23 KEAQAWYRWNYKQRYPKFSINVLKCSIRIALEAGPDVSSNGAPMCEIWQF 172
+E Q WYRW + + S+ + IA+ ++ ++G + +IW F
Sbjct: 129 QEHQIWYRWTNLMKQNQVSLEDSLAMLDIAMLVAEELIADGLTLAQIWSF 178


>tr|B3WDH9|B3WDH9_LACCB Endolysin OS=Lactobacillus casei (strain
BL23) GN=ps356 PE=4 SV=1
Length = 394

Score = 32.7 bits (73), Expect = 9.2
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3

Query: 264 VFLDF*SELWIASYGKLKIYRGPVMGQVDYMESRAIWHFLGLAGVLEGDALHVELIGV 437
+ +F + LWIA+Y P G M+ AIW + G+ +G +++L+G+
Sbjct: 174 ILKEFPNSLWIAAYRDYLPTTKPDYGYFPSMDGVAIWQYTSAFGLSQGLDGNIDLLGI 231


>tr|A2FKA7|A2FKA7_TRIVA Phosphofructokinase family protein
OS=Trichomonas vaginalis G3 GN=TVAG_293770 PE=4 SV=1
Length = 326

Score = 32.7 bits (73), Expect = 9.2
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3

Query: 303 YGKLKIYRGPVMGQVDYMESRAIWHFLGLAGVLEGDA 413
YG L+ YRG V GQ+ + SRA+ +GL G G A
Sbjct: 37 YGVLRGYRGLVEGQIFELNSRAVSGKMGLGGTFIGTA 73