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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917467
Clone id YMU001_000101_B12
Library
Length 388
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTGTTTAGACTCAAGAGAAGCCTATCTGCTAGAAAATACAGACACAACAGGTGTTCA
GATATGAGGATTAGCAAACTAATTGCCGACAACCCATGCATACAAAGCACTTTTCTTGTC
TTTCACGATCTTACCAAGCTGTAAAAGTTTGCATGGCAAACCAACTCAAACAGTGAAAAA
ACAAACACACTACAGCTACTAGTCTCGTTCCCCAAGTTCATCAACGTCATCTGGTAAAGC
ATCATCCTCCATCTCATTGAGCTCTATTTCACTTGGATCTTTTAATGGAGTTGCATCTGA
TTGTTTGGATCCTCGCTCCTCCGAAGCACATGACCCATCAAGCACATATGGTAACTCGAG
TAACTGAAGCAAAGATTCTGTGAAAGGA
■■Homology search results ■■ -
sp_hit_id Q6AU07
Definition sp|Q6AU07|DBR1_ORYSJ Lariat debranching enzyme OS=Oryza sativa subsp. japonica
Align length 55
Score (bit) 42.4
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917467|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B12.
         (388 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AU07|DBR1_ORYSJ Lariat debranching enzyme OS=Oryza sativa s...    42   7e-04
sp|Q94K01|DBR1_ARATH Lariat debranching enzyme OS=Arabidopsis th...    37   0.024
sp|Q6NZL6|IKBL2_MOUSE NF-kappa-B inhibitor-like protein 2 OS=Mus...    32   0.99 
sp|P40218|YM24_YEAST Uncharacterized protein YMR147W OS=Saccharo...    30   4.9  
sp|Q05319|STUB_DROME Serine proteinase stubble OS=Drosophila mel...    29   6.4  
sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion tra...    29   8.4  
sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopu...    29   8.4  
sp|Q9VGB4|CP132_DROME Probable cytochrome P450 313a2 OS=Drosophi...    29   8.4  

>sp|Q6AU07|DBR1_ORYSJ Lariat debranching enzyme OS=Oryza sativa
           subsp. japonica GN=DBR1 PE=2 SV=1
          Length = 407

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 387 PFTESLLQLLELPYVLDGSCA-SEERGSKQSDATPLKDPSEIELNEMEDDALPDD 226
           P TES LQLL LPY+LD S +    R    S      D  +IEL + EDD   DD
Sbjct: 352 PQTESFLQLLNLPYLLDSSNSYGVSRNESSSQTGQALDSDDIELPDDEDDPADDD 406


>sp|Q94K01|DBR1_ARATH Lariat debranching enzyme OS=Arabidopsis
           thaliana GN=DBR1 PE=2 SV=1
          Length = 418

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 24/62 (38%), Positives = 36/62 (58%)
 Frame = -2

Query: 387 PFTESLLQLLELPYVLDGSCASEERGSKQSDATPLKDPSEIELNEMEDDALPDDVDELGE 208
           P T SLL+LL LPY+LD S  + ER    +D      PS++   + E+  + DD+DE+ E
Sbjct: 350 PQTLSLLELLGLPYLLDSSPVTGER----TDIPASLAPSDLPTYDSEEIPI-DDIDEIEE 404

Query: 207 RD 202
            +
Sbjct: 405 ME 406


>sp|Q6NZL6|IKBL2_MOUSE NF-kappa-B inhibitor-like protein 2 OS=Mus
           musculus GN=Nfkbil2 PE=2 SV=2
          Length = 1363

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 369 LQLLELPYVLDGSCASEERGSKQSDATPLKDPSEIELNEMEDDA 238
           ++L EL    D     EE   ++ +A+   + SE+EL+E EDDA
Sbjct: 454 IRLQELSMAKDTEEEEEEEEEEEEEASEAPETSELELSESEDDA 497


>sp|P40218|YM24_YEAST Uncharacterized protein YMR147W
           OS=Saccharomyces cerevisiae GN=YMR147W PE=1 SV=1
          Length = 223

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 387 PFTESLLQLLELPYVLDGSCASEERGSKQSDATPLKDPS 271
           P TE+ +Q L L Y    +   E+   K+S   P+K PS
Sbjct: 95  PITEAEVQKLLLSYAFTSAAIQEDENEKESRHYPIKPPS 133


>sp|Q05319|STUB_DROME Serine proteinase stubble OS=Drosophila
           melanogaster GN=Sb PE=2 SV=2
          Length = 787

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 336 GSCASEERGSKQSDATPLKDPSEIELNEMEDDALPD 229
           G   S +R ++ +  TP+   S IE NE+ D ++PD
Sbjct: 480 GIVTSSQRPTQPTHRTPVLATSGIETNEISDSSIPD 515


>sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion
           transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2
           SV=1
          Length = 1564

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 193 QLLVSFPKFINVIW*SIILHLIELYFTWI 279
           Q L+    FI+++W S++  ++ +YF W+
Sbjct: 427 QKLMDVTNFIHLVWSSVLQIVLSIYFLWV 455


>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus
           laevis GN=ddx42 PE=2 SV=1
          Length = 947

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -2

Query: 360 LELPYVLDGSCASEERGSKQSDATPLKDPSEIELNEMEDDALPDDVDELGERD 202
           ++LPY+   +  + ++   ++D+   +DP E  + E+ED A   D+ +L ERD
Sbjct: 83  VDLPYIPAENSPTRQQLRSKTDSDSEEDPLEAFMAEVEDQA-AKDMRKLEERD 134


>sp|Q9VGB4|CP132_DROME Probable cytochrome P450 313a2 OS=Drosophila
           melanogaster GN=Cyp313a2 PE=3 SV=3
          Length = 493

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 233 QMTLMNLGNETSSCSVFVFSLFELVCHANFYSLV 132
           +M+LM LG E   CS  V + FE   H  +Y+LV
Sbjct: 281 EMSLMELGAE---CSSMVLAAFETSAHTVYYALV 311
tr_hit_id B6U6X4
Definition tr|B6U6X4|B6U6X4_MAIZE Lariat debranching enzyme OS=Zea mays
Align length 56
Score (bit) 44.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917467|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_B12.
         (388 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6U6X4|B6U6X4_MAIZE Lariat debranching enzyme OS=Zea mays PE=...    44   0.003
tr|Q0DNZ5|Q0DNZ5_ORYSJ Os03g0725300 protein OS=Oryza sativa subs...    42   0.012
tr|A3AM92|A3AM92_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.012
tr|A2XLK3|A2XLK3_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.012
tr|Q0D241|Q0D241_ARATH At4g31770 OS=Arabidopsis thaliana PE=2 SV=1     37   0.38 
tr|Q4U8H4|Q4U8H4_THEAN Serine/threonine protein kinase, putative...    34   3.2  
tr|B4NH71|B4NH71_DROWI GK14191 OS=Drosophila willistoni GN=GK141...    33   5.5  

>tr|B6U6X4|B6U6X4_MAIZE Lariat debranching enzyme OS=Zea mays PE=2
           SV=1
          Length = 407

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = -2

Query: 387 PFTESLLQLLELPYVLDGSCASEERGSKQSDATP--LKDPSEIELNEMEDDALPDD 226
           P TES LQLLELPY+LD S  SE  G  +S +      D  +IEL + ++DAL DD
Sbjct: 352 PQTESFLQLLELPYLLDSS-KSEMFGRNESTSQTGNTLDNEDIELPDEDEDALEDD 406


>tr|Q0DNZ5|Q0DNZ5_ORYSJ Os03g0725300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0725300 PE=2 SV=1
          Length = 407

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 387 PFTESLLQLLELPYVLDGSCA-SEERGSKQSDATPLKDPSEIELNEMEDDALPDD 226
           P TES LQLL LPY+LD S +    R    S      D  +IEL + EDD   DD
Sbjct: 352 PQTESFLQLLNLPYLLDSSNSYGVSRNESSSQTGQALDSDDIELPDDEDDPADDD 406


>tr|A3AM92|A3AM92_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011914 PE=4 SV=1
          Length = 489

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 387 PFTESLLQLLELPYVLDGSCA-SEERGSKQSDATPLKDPSEIELNEMEDDALPDD 226
           P TES LQLL LPY+LD S +    R    S      D  +IEL + EDD   DD
Sbjct: 434 PQTESFLQLLNLPYLLDSSNSYGVSRNESSSQTGQALDSDDIELPDDEDDPADDD 488


>tr|A2XLK3|A2XLK3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13356 PE=4 SV=1
          Length = 566

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 387 PFTESLLQLLELPYVLDGSCA-SEERGSKQSDATPLKDPSEIELNEMEDDALPDD 226
           P TES LQLL LPY+LD S +    R    S      D  +IEL + EDD   DD
Sbjct: 511 PQTESFLQLLNLPYLLDSSNSYGVSRNESSSQTGQALDSDDIELPDDEDDPADDD 565


>tr|Q0D241|Q0D241_ARATH At4g31770 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 418

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 24/62 (38%), Positives = 36/62 (58%)
 Frame = -2

Query: 387 PFTESLLQLLELPYVLDGSCASEERGSKQSDATPLKDPSEIELNEMEDDALPDDVDELGE 208
           P T SLL+LL LPY+LD S  + ER    +D      PS++   + E+  + DD+DE+ E
Sbjct: 350 PQTLSLLELLGLPYLLDSSPVTGER----TDIPASLAPSDLPTYDSEEIPI-DDIDEIEE 404

Query: 207 RD 202
            +
Sbjct: 405 ME 406


>tr|Q4U8H4|Q4U8H4_THEAN Serine/threonine protein kinase, putative
           OS=Theileria annulata GN=TA11120 PE=4 SV=1
          Length = 746

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -2

Query: 333 SCASEERGSKQSDATPLKD---PSEIELNEMEDDALP--DDVDELGERD 202
           +C SE+  SK+ D  P +D   P E +LN  EDD  P  +D++  GE +
Sbjct: 80  NCKSEDLNSKEDDLNPKEDDLNPKEDDLNPKEDDLNPKEEDLNPEGEEE 128


>tr|B4NH71|B4NH71_DROWI GK14191 OS=Drosophila willistoni GN=GK14191
            PE=4 SV=1
          Length = 987

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 327  ASEERGSKQSDATPLKDPSEIELNEMEDDALPDDVDELGERD 202
            A+ E      D+  ++ PS    NE  DD++ DD DE GE+D
Sbjct: 888  ATSEPTVNSLDSDSIETPSANTCNEANDDSIKDDEDENGEKD 929