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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917471
Clone id YMU001_000101_C04
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGCTCCCGCTTTGGCATCAATGTATGTGTTTTGGTTGATGGTTACTTTTGAGATTTCGAT
CATTTTTCAAAGGGGCTCTACCCACTTTTTCCAGCTGTTTTCTGCATGCTTTTTGGCTTG
ATCGCCACATCATTTTCTGACGCATTTGCAGCCATTGGTGTTTAAGATTACTCCCATGTT
GATGCTAGTTCGGACCCAGTTTTGCAAGGTCTTTTGAGACAGTTTCTAGGGCCAGTGGGA
GCCGATTTTATGCCATCGATTAGAGCTCTAGTGGGAGCTTTTTTGGCTTCTACATTGTTT
ATATGTTTCTGGCAACATTCAGAGCTCTTTTGCAATCTCTTGAGAAGGGCACTCCTCCCC
GCAGGGAAATCGCTCCAGTCCATGCTTGCTTGCATTGACTTTTGGTGCTTGTTTAC
■■Homology search results ■■ -
sp_hit_id Q9A9F4
Definition sp|Q9A9F4|LEPA_CAUCR GTP-binding protein lepA OS=Caulobacter crescentus
Align length 30
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917471|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_C04.
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9A9F4|LEPA_CAUCR GTP-binding protein lepA OS=Caulobacter cre...    30   3.8  
sp|Q98DV1|LEPA_RHILO GTP-binding protein lepA OS=Rhizobium loti ...    30   4.9  
sp|Q11AY3|LEPA_MESSB GTP-binding protein lepA OS=Mesorhizobium s...    30   4.9  
sp|Q8UIQ2|LEPA_AGRT5 GTP-binding protein lepA OS=Agrobacterium t...    30   4.9  
sp|Q6G550|LEPA_BARHE GTP-binding protein lepA OS=Bartonella hens...    29   6.4  
sp|Q9QY33|TSN3_MOUSE Tetraspanin-3 OS=Mus musculus GN=Tspan3 PE=...    29   8.4  
sp|Q1MMQ8|LEPA_RHIL3 GTP-binding protein lepA OS=Rhizobium legum...    29   8.4  
sp|Q2KDL5|LEPA_RHIEC GTP-binding protein lepA OS=Rhizobium etli ...    29   8.4  
sp|A6WYK4|LEPA_OCHA4 GTP-binding protein lepA OS=Ochrobactrum an...    29   8.4  
sp|Q19791|GON1_CAEEL A disintegrin and metalloproteinase with th...    29   8.4  
sp|Q3E7J7|FBL83_ARATH Putative F-box/LRR-repeat protein At5g2586...    29   8.4  
sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo s...    29   8.4  
sp|Q01555|COX1_TRIRU Cytochrome c oxidase subunit 1 OS=Trichophy...    29   8.4  

>sp|Q9A9F4|LEPA_CAUCR GTP-binding protein lepA OS=Caulobacter
           crescentus GN=lepA PE=3 SV=2
          Length = 606

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 70  KGLYPLFPAVFCMLFGLIATSFSDAFAAIG 159
           KG   + P VFC LF + A  F D  AA+G
Sbjct: 295 KGFKEVVPVVFCGLFPVDAADFEDLRAAVG 324


>sp|Q98DV1|LEPA_RHILO GTP-binding protein lepA OS=Rhizobium loti
           GN=lepA PE=3 SV=1
          Length = 601

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  GLYPLFPAVFCMLFGLIATSFSDAFAAIG 159
           G  P  P VFC LF + A  F D  AA+G
Sbjct: 292 GFKPAQPVVFCGLFPVDAADFEDLRAAVG 320


>sp|Q11AY3|LEPA_MESSB GTP-binding protein lepA OS=Mesorhizobium sp.
           (strain BNC1) GN=lepA PE=3 SV=1
          Length = 605

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  GLYPLFPAVFCMLFGLIATSFSDAFAAIG 159
           G  P  P VFC LF + A  F D  AA+G
Sbjct: 296 GFKPAQPVVFCGLFPVDAADFEDLRAAVG 324


>sp|Q8UIQ2|LEPA_AGRT5 GTP-binding protein lepA OS=Agrobacterium
           tumefaciens (strain C58 / ATCC 33970) GN=lepA PE=3 SV=1
          Length = 608

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  GLYPLFPAVFCMLFGLIATSFSDAFAAIG 159
           G  P  P VFC LF + A  F D  AA+G
Sbjct: 298 GFKPAQPVVFCGLFPVDAADFEDLRAAVG 326


>sp|Q6G550|LEPA_BARHE GTP-binding protein lepA OS=Bartonella
           henselae GN=lepA PE=3 SV=1
          Length = 601

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  GLYPLFPAVFCMLFGLIATSFSDAFAAIG 159
           G  P  P VFC LF + A  F D  AA+G
Sbjct: 292 GFKPAQPVVFCGLFPIDAADFDDLRAAMG 320


>sp|Q9QY33|TSN3_MOUSE Tetraspanin-3 OS=Mus musculus GN=Tspan3 PE=1
           SV=1
          Length = 253

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 52  DFDHFSKGLYPLFPAVFCMLFGLI 123
           D+DHF + +Y LFPAV  +  G +
Sbjct: 40  DYDHFFEDVYTLFPAVVIIAVGAL 63


>sp|Q1MMQ8|LEPA_RHIL3 GTP-binding protein lepA OS=Rhizobium
           leguminosarum bv. viciae (strain 3841) GN=lepA PE=3 SV=1
          Length = 610

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  GLYPLFPAVFCMLFGLIATSFSDAFAAIG 159
           G  P  P VFC LF + A  F D  AA+G
Sbjct: 300 GFKPAQPVVFCGLFPVDAADFEDLRAAMG 328


>sp|Q2KDL5|LEPA_RHIEC GTP-binding protein lepA OS=Rhizobium etli
           (strain CFN 42 / ATCC 51251) GN=lepA PE=3 SV=1
          Length = 610

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  GLYPLFPAVFCMLFGLIATSFSDAFAAIG 159
           G  P  P VFC LF + A  F D  AA+G
Sbjct: 300 GFKPAQPVVFCGLFPVDAADFEDLRAAMG 328


>sp|A6WYK4|LEPA_OCHA4 GTP-binding protein lepA OS=Ochrobactrum
           anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
           GN=lepA PE=3 SV=1
          Length = 602

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  GLYPLFPAVFCMLFGLIATSFSDAFAAIG 159
           G  P  P VFC LF + A  F D  AA+G
Sbjct: 292 GFKPAQPVVFCGLFPVDAADFEDLRAAMG 320


>sp|Q19791|GON1_CAEEL A disintegrin and metalloproteinase with
            thrombospondin motifs gon-1 OS=Caenorhabditis elegans
            GN=gon-1 PE=1 SV=3
          Length = 2150

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 251  IKSAPTGPRNCLKRPCKTGSELASTW 174
            ++  PT  RNC   PC  G E   +W
Sbjct: 1453 VQKRPTSARNCRLEPCPKGEEHIGSW 1478
tr_hit_id A9I643
Definition tr|A9I643|A9I643_BORPD Amino acid transporter OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
Align length 74
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917471|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_C04.
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9I643|A9I643_BORPD Amino acid transporter OS=Bordetella petr...    34   3.2  
tr|A4C1L9|A4C1L9_9FLAO Putative uncharacterized protein OS=Polar...    33   9.2  

>tr|A9I643|A9I643_BORPD Amino acid transporter OS=Bordetella petrii
           (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
           GN=Bpet3919 PE=4 SV=1
          Length = 438

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/74 (33%), Positives = 37/74 (50%)
 Frame = +1

Query: 142 AFAAIGV*DYSHVDASSDPVLQGLLRQFLGPVGADFMPSIRALVGAFLASTLFICFWQHS 321
           A AA+G  D+  + AS+ P L    + FLGPVGA  +  +  L  A  A+ + +     S
Sbjct: 246 ACAALGTLDWRELGASAAP-LADAAQAFLGPVGARVVAMVAVLTTAATANAVLVA---TS 301

Query: 322 ELFCNLLRRALLPA 363
            +   + R  LLPA
Sbjct: 302 RISFAMARDGLLPA 315


>tr|A4C1L9|A4C1L9_9FLAO Putative uncharacterized protein
           OS=Polaribacter irgensii 23-P GN=PI23P_11832 PE=4 SV=1
          Length = 185

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 100 FCMLFGLIATSFSDAFAAIGV*DYSHVDASSDPVLQGLLRQFLGPVGADFMPSIRALVGA 279
           F +LF ++  +FSD F  +    +  +  ++DP ++ LLR  + P    FM       G 
Sbjct: 58  FALLFMILLVAFSDQFTNLIKNSFERLRPNNDPEIKYLLRTLISPQSYSFMS------GH 111

Query: 280 FLASTLFICF 309
              ST F  F
Sbjct: 112 ATTSTFFSVF 121