BP917474
Clone id YMU001_000101_C07
Library
Length 287
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATACTTAACAAAGGATGAGCCACATACATCTGCATATATCATTCATAAACACCAAGCTGA
TGTACTCTTTTCCATCTTGATAAGAGATCAGTCCTCAAGTGGCTTGCATTCGTCCACAGT
ATGCATACATCATACTTGACTCAGCTCTAGGCTGCATATTACCAACCCAACCTCATCCCC
AGTTAGCAGCGCTCGACATTTCTTTAAAGCGGAGGTCTCGACCCTCCTCACAGTTGGCAG
TCCTTGAAGCTCTTGTAGGGGTCGCCATCTATAAATGGCAGGTCTGC
■■Homology search results ■■ -
sp_hit_id Q2J5Z1
Definition sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3)
Align length 76
Score (bit) 32.0
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917474|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_C07.
(287 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (stra... 32 0.98
sp|Q28235|PRLR_CEREL Prolactin receptor OS=Cervus elaphus GN=PRL... 29 8.3

>sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain
CcI3) GN=pth PE=3 SV=1
Length = 197

Score = 32.0 bits (71), Expect = 0.98
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +2

Query: 35 YIIHKHQADVLFSILIRDQSSSGL--HSSTVCIHHT*LSSR-------LHITNPTSSPVS 187
Y ++H A + L+ +++ S L H S + T L+ L N + PV+
Sbjct: 23 YAGNRHNAGFMVVDLLAERTGSRLKSHRSRADVAETRLAGARAVLARPLSFMNLSGGPVA 82

Query: 188 SARHFFKAEVSTLLTV 235
+AR F+K EVS L+ V
Sbjct: 83 AARSFYKVEVSRLIVV 98


>sp|Q28235|PRLR_CEREL Prolactin receptor OS=Cervus elaphus GN=PRLR
PE=2 SV=1
Length = 581

Score = 28.9 bits (63), Expect = 8.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3

Query: 141 SALGCILPTQPHPQLAALDISLKRRSRPSSQLAVLEA 251
S + CILP P P++ DI L + + L LE+
Sbjct: 262 SMMTCILPPVPGPKIKGFDIHLLEKGKSEELLRALES 298


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917474|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_C07.
(287 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******