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NBDC - LSDB Archive
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BP917476
Clone id YMU001_000101_C09
Library
Length 367
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCTTTCAATTGTGCAACTGCCTACTGGTGAACTGCACGTCAATCCATCCTCTGAAGATAA
TCCCTGCATAGGTGTTGCAGCTTTTCTGGGAAACACCTGACCAGTAAATGTATCACAATA
GTTGGACAACAATTTACTCAGTTCCTCTTTGATCAACCGGCAATGTCCACAGTCCTTGCT
TCCACTTTCTGCAAGATTAGAAAGAGACTCAAACTGACTATGCAAAGCTGTCACAGCCAT
CCGCAGCTTTTGACTCTCTGCTTGATCCTCTATGCAATCCTTTTCCAATCTTGCAAGGCC
CTGTCGCCTATTAGAAGTCATGGCTGCTCCAAGCTCATCCATTTGTCTGCAATTATCTGA
AAATGAA
■■Homology search results ■■ -
sp_hit_id Q99K41
Definition sp|Q99K41|EMIL1_MOUSE EMILIN-1 OS=Mus musculus
Align length 59
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917476|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_C09.
         (367 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99K41|EMIL1_MOUSE EMILIN-1 OS=Mus musculus GN=Emilin1 PE=1 SV=1    30   2.9  
sp|Q62918|NELL2_RAT Protein kinase C-binding protein NELL2 OS=Ra...    30   3.7  
sp|Q4V7D3|MACOI_RAT Macoilin OS=Rattus norvegicus GN=Tmem57 PE=2...    30   3.7  
sp|Q2TLZ2|MACOI_PIG Macoilin OS=Sus scrofa GN=TMEM57 PE=2 SV=1         30   3.7  
sp|Q2TLZ5|MACOI_PANTR Macoilin OS=Pan troglodytes GN=TMEM57 PE=2...    30   3.7  
sp|Q2TLZ4|MACOI_MACMU Macoilin OS=Macaca mulatta GN=TMEM57 PE=2 ...    30   3.7  
sp|Q8N5G2|MACOI_HUMAN Macoilin OS=Homo sapiens GN=TMEM57 PE=1 SV=1     30   3.7  
sp|Q2TLZ1|MACOI_CANFA Macoilin OS=Canis familiaris GN=TMEM57 PE=...    30   3.7  
sp|Q2TLZ3|MACOI_BOVIN Macoilin OS=Bos taurus GN=TMEM57 PE=2 SV=1       30   3.7  
sp|A5UM85|GRPE_METS3 Protein grpE OS=Methanobrevibacter smithii ...    30   3.7  
sp|Q9KPE3|COAE_VIBCH Dephospho-CoA kinase OS=Vibrio cholerae GN=...    30   3.7  
sp|Q9CLG7|RMUC_PASMU DNA recombination protein rmuC homolog OS=P...    30   4.9  
sp|P15918|RAG1_HUMAN V(D)J recombination-activating protein 1 OS...    30   4.9  
sp|P47226|TES_MOUSE Testin OS=Mus musculus GN=Tes PE=2 SV=1            29   6.4  
sp|Q4P3X7|BRE1_USTMA E3 ubiquitin-protein ligase BRE1 OS=Ustilag...    29   6.4  
sp|Q02YQ9|SCPB_LACLS Segregation and condensation protein B OS=L...    29   8.3  
sp|A2RKH6|SCPB_LACLM Segregation and condensation protein B OS=L...    29   8.3  
sp|A0L0R3|PANC_SHESA Pantothenate synthetase OS=Shewanella sp. (...    29   8.3  
sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcriptio...    29   8.4  

>sp|Q99K41|EMIL1_MOUSE EMILIN-1 OS=Mus musculus GN=Emilin1 PE=1 SV=1
          Length = 1017

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -2

Query: 297 LARLEK--DCIEDQAESQKLRMAVTALH-SQFESLSNLAESGSKDCGHCRLIKEELSKL 130
           L+RL +  D  E+ A    LR+ +TA   SQ E L  L   G + CG C  ++EEL +L
Sbjct: 540 LSRLRERMDAQEETAAEILLRLNLTAAQLSQLEGL--LQARGDEGCGACGGVQEELGRL 596


>sp|Q62918|NELL2_RAT Protein kinase C-binding protein NELL2
           OS=Rattus norvegicus GN=Nell2 PE=2 SV=1
          Length = 816

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 243 RMAVTALHSQFESLSNLAESGSKDCGHCRLIKEEL 139
           R++   LH   E++ N  ++ ++DC  CR ++EE+
Sbjct: 695 RLSSQCLHQNGETVYNSGDTWAQDCRQCRCLQEEV 729


>sp|Q4V7D3|MACOI_RAT Macoilin OS=Rattus norvegicus GN=Tmem57 PE=2
           SV=1
          Length = 664

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -2

Query: 357 DNCRQMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGS 178
           +NC   ++L      ++   L RLE+D  + +A+ Q  R     L SQ  SLS+      
Sbjct: 369 ENCIPNNQL------SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIR 422

Query: 177 KDCGHCRLIKEELSKLLSN 121
            + G  R   E L   L N
Sbjct: 423 SEMGQLRQENELLQNKLHN 441


>sp|Q2TLZ2|MACOI_PIG Macoilin OS=Sus scrofa GN=TMEM57 PE=2 SV=1
          Length = 664

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -2

Query: 357 DNCRQMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGS 178
           +NC   ++L      ++   L RLE+D  + +A+ Q  R     L SQ  SLS+      
Sbjct: 369 ENCIPNNQL------SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIR 422

Query: 177 KDCGHCRLIKEELSKLLSN 121
            + G  R   E L   L N
Sbjct: 423 SEMGQLRQENELLQNKLHN 441


>sp|Q2TLZ5|MACOI_PANTR Macoilin OS=Pan troglodytes GN=TMEM57 PE=2
           SV=1
          Length = 664

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -2

Query: 357 DNCRQMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGS 178
           +NC   ++L      ++   L RLE+D  + +A+ Q  R     L SQ  SLS+      
Sbjct: 369 ENCIPNNQL------SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIR 422

Query: 177 KDCGHCRLIKEELSKLLSN 121
            + G  R   E L   L N
Sbjct: 423 SEMGQLRQENELLQNKLHN 441


>sp|Q2TLZ4|MACOI_MACMU Macoilin OS=Macaca mulatta GN=TMEM57 PE=2
           SV=1
          Length = 664

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -2

Query: 357 DNCRQMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGS 178
           +NC   ++L      ++   L RLE+D  + +A+ Q  R     L SQ  SLS+      
Sbjct: 369 ENCIPNNQL------SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIR 422

Query: 177 KDCGHCRLIKEELSKLLSN 121
            + G  R   E L   L N
Sbjct: 423 SEMGQLRQENELLQNKLHN 441


>sp|Q8N5G2|MACOI_HUMAN Macoilin OS=Homo sapiens GN=TMEM57 PE=1 SV=1
          Length = 664

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -2

Query: 357 DNCRQMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGS 178
           +NC   ++L      ++   L RLE+D  + +A+ Q  R     L SQ  SLS+      
Sbjct: 369 ENCIPNNQL------SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIR 422

Query: 177 KDCGHCRLIKEELSKLLSN 121
            + G  R   E L   L N
Sbjct: 423 SEMGQLRQENELLQNKLHN 441


>sp|Q2TLZ1|MACOI_CANFA Macoilin OS=Canis familiaris GN=TMEM57 PE=2
           SV=1
          Length = 664

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -2

Query: 357 DNCRQMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGS 178
           +NC   ++L      ++   L RLE+D  + +A+ Q  R     L SQ  SLS+      
Sbjct: 369 ENCIPNNQL------SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIR 422

Query: 177 KDCGHCRLIKEELSKLLSN 121
            + G  R   E L   L N
Sbjct: 423 SEMGQLRQENELLQNKLHN 441


>sp|Q2TLZ3|MACOI_BOVIN Macoilin OS=Bos taurus GN=TMEM57 PE=2 SV=1
          Length = 664

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -2

Query: 357 DNCRQMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGS 178
           +NC   ++L      ++   L RLE+D  + +A+ Q  R     L SQ  SLS+      
Sbjct: 369 ENCIPNNQL------SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIR 422

Query: 177 KDCGHCRLIKEELSKLLSN 121
            + G  R   E L   L N
Sbjct: 423 SEMGQLRQENELLQNKLHN 441


>sp|A5UM85|GRPE_METS3 Protein grpE OS=Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861) GN=grpE PE=3 SV=1
          Length = 185

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = -2

Query: 339 DELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGSKDCGHC 160
           DEL   + S  ++ LA++ +D  + + E+Q+       L + FE+   + E  SKD    
Sbjct: 22  DELLEELDSKNKE-LAKINEDLEKQKEETQEYISLSQRLQADFENFKKINEKKSKD---- 76

Query: 159 RLIKEELSKLLSNYCDTF 106
            +IK     L+ N  D++
Sbjct: 77  -IIKFANEPLIKNILDSY 93
tr_hit_id Q4ZX89
Definition tr|Q4ZX89|Q4ZX89_PSEU2 Oligopeptide transporter OPT superfamily OS=Pseudomonas syringae pv. syringae (strain B728a)
Align length 46
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917476|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_C09.
         (367 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4ZX89|Q4ZX89_PSEU2 Oligopeptide transporter OPT superfamily ...    35   1.4  
tr|Q48M59|Q48M59_PSE14 Oligopeptide transporter, OPT family OS=P...    35   2.4  
tr|A4IC00|A4IC00_LEIIN Putative uncharacterized protein OS=Leish...    35   2.4  
tr|A0E510|A0E510_PARTE Chromosome undetermined scaffold_79, whol...    35   2.4  
tr|A1VW46|A1VW46_POLNA Superfamily I DNA and RNA helicases and h...    34   4.2  
tr|Q4FW09|Q4FW09_LEIMA Putative uncharacterized protein OS=Leish...    34   4.2  
tr|Q9W6P5|Q9W6P5_TURHO Recombination activating protein 1 (Fragm...    33   5.4  
tr|Q2GVP8|Q2GVP8_CHAGB Putative uncharacterized protein OS=Chaet...    33   5.4  
tr|B0YE23|B0YE23_ASPFC Putative uncharacterized protein OS=Asper...    33   5.4  
tr|A6W1T8|A6W1T8_MARMS Protein-disulfide isomerase-like protein ...    33   7.1  
tr|Q6CPF6|Q6CPF6_KLULA KLLA0E05281p OS=Kluyveromyces lactis GN=K...    33   9.3  
tr|B2ACQ5|B2ACQ5_PODAN Predicted CDS Pa_3_1750 (Fragment) OS=Pod...    33   9.3  

>tr|Q4ZX89|Q4ZX89_PSEU2 Oligopeptide transporter OPT superfamily
           OS=Pseudomonas syringae pv. syringae (strain B728a)
           GN=Psyr_1179 PE=4 SV=1
          Length = 581

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 181 KQGLWTLPVDQRGTE*IVVQLL*YIYWSGVSQKSCNTYAGIIFRGW 44
           +QGL TLP D  G +     L+ ++ W GVS   C+T A +  R W
Sbjct: 249 EQGLVTLPADSSGPQ--FAALVEWLLWPGVSLMVCSTLASLAIRLW 292


>tr|Q48M59|Q48M59_PSE14 Oligopeptide transporter, OPT family
           OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
           Race 6) GN=PSPPH_1251 PE=4 SV=1
          Length = 581

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 181 KQGLWTLPVDQRGTE*IVVQLL*YIYWSGVSQKSCNTYAGIIFRGW 44
           +QGL  LP D  G +     L+ ++ W GVS   C+T A ++ R W
Sbjct: 249 EQGLVILPADSSGPQ--FAALVEWLLWPGVSLMVCSTLASLVIRLW 292


>tr|A4IC00|A4IC00_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ35.4720 PE=4 SV=1
          Length = 512

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = -2

Query: 345 QMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAES--GSKD 172
           Q D+      +  ++ LA  ++  +++QA +Q+L+  V+ L  +  S S +A S  G   
Sbjct: 292 QPDDSWMEERAQLQKELAYAQERVLQEQARNQRLKRQVSQLE-KVASASPIAPSAAGPST 350

Query: 171 CGHCRLIKEELSKLLSNY 118
           C HC   + ++ K LS+Y
Sbjct: 351 CTHCEKTRADMKKQLSDY 368


>tr|A0E510|A0E510_PARTE Chromosome undetermined scaffold_79, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00023554001 PE=4 SV=1
          Length = 1124

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = -2

Query: 330 GAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGSKDCGHCRLI 151
           G  M     + +  L+ +CI  +    +L+  +T    Q   L ++  +  K+C  C+L 
Sbjct: 434 GNTMPEVHNRAMEELQAECINQKILISQLQSQLTQ-QMQMHQLQHMTSNSYKECEQCKLC 492

Query: 150 KEELSKLL 127
           K+EL+ ++
Sbjct: 493 KDELANII 500


>tr|A1VW46|A1VW46_POLNA Superfamily I DNA and RNA helicases and
           helicase subunits-like protein OS=Polaromonas
           naphthalenivorans (strain CJ2) GN=Pnap_4606 PE=4 SV=1
          Length = 1284

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -2

Query: 306 RQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGSKDCGHCRLIKEELSKLL 127
           R  +ARL+     D  +  + R+ + AL SQ E+LSN  E+G    G  R  + +L+ L 
Sbjct: 638 RSDVARLQA-ARTDTLQDPQTRLNMQALESQIEALSNRLEAGEDVAGQWRTSRAQLNALK 696

Query: 126 SN 121
            N
Sbjct: 697 QN 698


>tr|Q4FW09|Q4FW09_LEIMA Putative uncharacterized protein
           OS=Leishmania major strain Friedlin GN=LMJ_1391 PE=4
           SV=1
          Length = 511

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = -2

Query: 345 QMDELGAAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAES--GSKD 172
           Q DE      +  ++ LA  ++  +++Q+++Q L+  V+ L  +    S +A S  GS  
Sbjct: 291 QPDESWMEERAQLQKELAYAQQRVLQEQSQNQMLKRQVSQLE-KVALASPIAPSAAGSST 349

Query: 171 CGHCRLIKEELSKLLSNY 118
           C HC   + ++ K LS+Y
Sbjct: 350 CTHCEQTRADMKKQLSDY 367


>tr|Q9W6P5|Q9W6P5_TURHO Recombination activating protein 1
           (Fragment) OS=Turnix hottentotta GN=RAG-1 PE=4 SV=1
          Length = 967

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -2

Query: 195 LAESGSKDCGH--CRLIKEELSKLLSNYCDTFTGQVFPRKAATPMQG-LSSEDGLTCSSP 25
           LA+     C H  CR+   +  K++ +YC +     FP    TP++  LS  DGL    P
Sbjct: 274 LADPVETTCRHLFCRMCILKCIKVMGSYCPSCWYPCFPTDLVTPVKSFLSILDGLAIRCP 333

Query: 24  VGSC 13
           V  C
Sbjct: 334 VKEC 337


>tr|Q2GVP8|Q2GVP8_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_07956 PE=4 SV=1
          Length = 753

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
 Frame = -2

Query: 327 AAMTSNRRQGLARLEKDCIEDQAESQKLRMAVTALHSQFESLSNLAESGSKDCGHCRLIK 148
           A + S++ Q + RLE DC    +E+  LR  +  L  Q E       S  +   H   +K
Sbjct: 30  AKINSDQSQKIRRLENDCARLLSENLDLRGQILRLEKQVED-----NSAQRIADHALQVK 84

Query: 147 EELSKLLSNYCDTFTGQVFPRKAATPMQGLSSEDGL---TCSS 28
           E+L   LS     FT  +       P +  +SE+ +   TC S
Sbjct: 85  EKLEHQLSE----FTALLGSLGVEPPAKRRASEERMLSNTCQS 123


>tr|B0YE23|B0YE23_ASPFC Putative uncharacterized protein
           OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 /
           FGSC A1163) GN=AFUB_097580 PE=4 SV=1
          Length = 621

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
 Frame = -2

Query: 291 RLEKDCIEDQAES---QKLRMAVTALHSQFESLSN--LAESGSKDCGHCRLIKEELSKLL 127
           RLE++ I++Q  +   ++L+  V  LHS   S+    + ++  K  GH  L + +L    
Sbjct: 166 RLEENDIDNQGRTWLERQLQSTVKVLHSLQNSVQGPLMRDAEDKGIGHMILEEVQLEDPS 225

Query: 126 SNYCDTFTGQ-----------VFPRKAATP----MQGLSSEDGLTCSSPVGSCTIER 1
           + Y   F+ +           V P  AAT         SS+D L CS P     ++R
Sbjct: 226 NGYAPAFSTRRPAGAMLVDLAVLPEHAATVRSKYFSPFSSDDPLVCSEPGNDIDLKR 282


>tr|A6W1T8|A6W1T8_MARMS Protein-disulfide isomerase-like protein
           OS=Marinomonas sp. (strain MWYL1) GN=Mmwyl1_3766 PE=3
           SV=1
          Length = 238

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = -2

Query: 297 LARLEKDCIEDQAESQKLRMAVTALHSQF------ESLSNLAESGSKDCGHCRLIKEELS 136
           L R++   +E++ E  KL    T   SQ       +  +++      DCG+CR++ +E+ 
Sbjct: 80  LYRIDNTTLENETEKAKLAKIETLPESQMIVYKAKDEKAHITVFTDVDCGYCRMLHKEVP 139

Query: 135 KLLSNYCDTFTGQVFPRKAATPMQGLSSE 49
           KL           V  R  A P  G+ SE
Sbjct: 140 KLNE-------AGVTVRYLAYPRAGIGSE 161