NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917499
Clone id YMU001_000101_E12
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCCTACAATTTGTTGGCGGCTTCTGTTGTGAAGATTTCTTAGTATCCTCATCCTTGAGGA
TGAAGCAGTAGGTCTTGCTGCTGGGGACCTGATGGTTGGGAGGACTCTTTGCATCTCCCT
CCTAGCGGCCTGCATTATTGACGCATTCGCTACTTGAGATGCTGGCTCAACTCTTTGTTG
TGTGTATCTTGCATTCTCCTCTTCCTGTAACATCCGCGCCAAGTGTGCATCATCCAGAGC
AAAATTTCCTTCATCAGCTTCCAGACCATAATCCTCCTGTAGAAACTTTGCCAGCATTTC
ATCTTCTTCAATCTGCCTAGCCCTGTTAGCAGCAGCAGACACAATTCTCTCAGCAGTTGC
GCTGCTGCTTGGACACTCCAAACTATCTACATCGATAGGCCGTTCCATTCCTCCAAAT
■■Homology search results ■■ -
sp_hit_id Q7M3Y3
Definition sp|Q7M3Y3|TNNI_CHLNI Troponin I OS=Chlamys nipponensis akazara
Align length 90
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917499|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_E12.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7M3Y3|TNNI_CHLNI Troponin I OS=Chlamys nipponensis akazara P...    31   2.2  
sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo ...    30   2.9  
sp|O14319|CUE5_SCHPO CUE domain-containing protein 5 OS=Schizosa...    30   2.9  
sp|Q5B122|RT106_EMENI Histone chaperone rtt106 OS=Emericella nid...    30   3.8  
sp|Q71QF9|PRIC1_RAT Prickle-like protein 1 OS=Rattus norvegicus ...    30   3.8  
sp|Q3U5C7|PRIC1_MOUSE Prickle-like protein 1 OS=Mus musculus GN=...    30   3.8  
sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 OS=Homo sapiens GN=...    30   3.8  
sp|P70348|GCM1_MOUSE Chorion-specific transcription factor GCMa ...    30   3.8  
sp|Q8K1N2|PHLB2_MOUSE Pleckstrin homology-like domain family B m...    29   6.4  
sp|Q86SQ0|PHLB2_HUMAN Pleckstrin homology-like domain family B m...    29   6.4  
sp|Q8BUK6|HOOK3_MOUSE Protein Hook homolog 3 OS=Mus musculus GN=...    29   8.4  
sp|Q9HFW2|CLA4_ASHGO Serine/threonine-protein kinase CLA4 OS=Ash...    29   8.4  

>sp|Q7M3Y3|TNNI_CHLNI Troponin I OS=Chlamys nipponensis akazara PE=1
           SV=2
          Length = 292

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -2

Query: 369 SSSATAERIVSAAAN--RARQIEEDEMLAKFLQEDYGLEADEGNFALDDAHLARMLQEEE 196
           S SA AE    A A   R +Q EE+E  A+  +E+Y  + +E         L R  QEEE
Sbjct: 45  SYSAPAEPAYDAEAENRRRQQQEEEEAAARAAEEEYNRQQEE---------LRRQRQEEE 95

Query: 195 NARYTQQRVEPASQVANASIMQAARREMQR 106
             R   +  E   Q      ++  R E +R
Sbjct: 96  RQR---REEEQRRQQEEEERLRLEREEQER 122


>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo
            sapiens GN=REST PE=1 SV=2
          Length = 1097

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = -2

Query: 399  PIDVDSLECPSSSATAERIVSAAANRARQIEEDEMLAKFLQEDYGLEADEGNFALDDA-- 226
            P  V+  E  S +A A    + AAN +++I+EDE +      D      EG+   DD+  
Sbjct: 976  PSAVEEREAVSKTALASPPATMAANESQEIDEDEGIHSHEGSDLSDNMSEGS---DDSGL 1032

Query: 225  HLARMLQEEENARYTQQ 175
            H AR + +E + +  ++
Sbjct: 1033 HGARPVPQESSRKNAKE 1049


>sp|O14319|CUE5_SCHPO CUE domain-containing protein 5
           OS=Schizosaccharomyces pombe GN=SPBC16E9.02c PE=2 SV=1
          Length = 569

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
 Frame = -2

Query: 393 DVDSLECPSSSATAERIVSAAANRARQIEEDEMLA-----KFLQEDYG-LEADEGNFALD 232
           D + L   SSS+   R  S  +NR R +E     A      F+ +  G +E     FALD
Sbjct: 243 DFERLRLESSSSPMMRRSSLNSNR-RSVESSSSAAFVEGQSFILDSNGAIEVANSAFALD 301

Query: 231 DAHLARMLQEE-ENARYTQQRVEPASQVANASIMQAARREMQRVLPTI 91
           D+ L     EE E  + T +      +V        +R++  R L T+
Sbjct: 302 DSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETV 349


>sp|Q5B122|RT106_EMENI Histone chaperone rtt106 OS=Emericella
           nidulans GN=rtt106 PE=3 SV=2
          Length = 458

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
 Frame = -2

Query: 417 FGGMERPI------DVDSLECPSS-SATAERIVSAAANRARQIEEDEMLAKFLQEDY-GL 262
           F G ++P+      ++DS+   S    T    + A A  + + +E E  +   Q DY G+
Sbjct: 288 FFGYKKPLLFFAFENIDSISYTSVLQRTFNLNIVARATGSDETQEFEF-SMIDQADYSGI 346

Query: 261 EADEGNFALDDAHLARMLQEEE---NARYTQQRVEPASQVANASIMQAARREMQ 109
           +       L DA LA   + +    N   T++  E ASQ A  S +Q A+RE++
Sbjct: 347 DTYIKTHGLQDASLAEARRAKRYNINGAKTEENGEAASQEAEESELQKAQRELE 400


>sp|Q71QF9|PRIC1_RAT Prickle-like protein 1 OS=Rattus norvegicus
           GN=Prickle1 PE=2 SV=2
          Length = 831

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 168 QLFVVCILHSPLPVTSAPSVHHPEQNFLHQLPDHNPPV 281
           QL+  C+    +P  ++P   H  +  L+QLP H+  V
Sbjct: 46  QLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEV 83


>sp|Q3U5C7|PRIC1_MOUSE Prickle-like protein 1 OS=Mus musculus
           GN=Prickle1 PE=2 SV=1
          Length = 832

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 168 QLFVVCILHSPLPVTSAPSVHHPEQNFLHQLPDHNPPV 281
           QL+  C+    +P  ++P   H  +  L+QLP H+  V
Sbjct: 46  QLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEV 83


>sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 OS=Homo sapiens
           GN=PRICKLE1 PE=1 SV=2
          Length = 831

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 168 QLFVVCILHSPLPVTSAPSVHHPEQNFLHQLPDHNPPV 281
           QL+  C+    +P  ++P   H  +  L+QLP H+  V
Sbjct: 46  QLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEV 83


>sp|P70348|GCM1_MOUSE Chorion-specific transcription factor GCMa
           OS=Mus musculus GN=Gcm1 PE=1 SV=1
          Length = 436

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 198 PLPVTSAPSVHHPEQNFLHQLPDHNP--PVETLPAFHLLQS 314
           PLPV S P  + P QN L  LP   P  P    P  H L S
Sbjct: 317 PLPVASWPYDYFPSQNSLEHLPQQVPSEPPAAQPGCHPLWS 357


>sp|Q8K1N2|PHLB2_MOUSE Pleckstrin homology-like domain family B member
            2 OS=Mus musculus GN=Phldb2 PE=1 SV=2
          Length = 1249

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
 Frame = -2

Query: 387  DSLECPSSSATAERIVSAAANRARQIEEDEMLAK-------FLQEDYGLEADEGNFALDD 229
            DS+E   S+ + + I SA+ +   +IEE E L K        L E    E +    AL++
Sbjct: 1006 DSMETSISACSPDNISSASTSNIARIEEMERLLKQAHAEKTRLLESREREMEAKKRALEE 1065

Query: 228  AH-----LARMLQEEENARYTQQRVEPASQVANASIMQAARREMQRVLP 97
                   L + LQEE + R  Q+ +E   ++      QA  R + R LP
Sbjct: 1066 EKRRREILEKRLQEETSQR--QKLIEKEVKIREKQRAQA--RPLTRYLP 1110


>sp|Q86SQ0|PHLB2_HUMAN Pleckstrin homology-like domain family B member
            2 OS=Homo sapiens GN=PHLDB2 PE=1 SV=2
          Length = 1253

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
 Frame = -2

Query: 387  DSLECPSSSATAERIVSAAANRARQIEEDEMLAK-------FLQEDYGLEADEGNFALDD 229
            DS+E   S+ + + I SA+ +   +IEE E L K        L E    E +    AL++
Sbjct: 1010 DSMETSISACSPDNISSASTSNIARIEEMERLLKQAHAEKTRLLESREREMEAKKRALEE 1069

Query: 228  AH-----LARMLQEEENARYTQQRVEPASQVANASIMQAARREMQRVLP 97
                   L + LQEE + R  Q+ +E   ++      QA  R + R LP
Sbjct: 1070 EKRRREILEKRLQEETSQR--QKLIEKEVKIRERQRAQA--RPLTRYLP 1114
tr_hit_id A9TPP1
Definition tr|A9TPP1|A9TPP1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 45.1
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917499|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_E12.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TPP1|A9TPP1_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A5B191|A5B191_VITVI Putative uncharacterized protein OS=Vitis...    43   0.007
tr|A2DVR7|A2DVR7_TRIVA Putative uncharacterized protein OS=Trich...    36   1.1  
tr|Q39XC1|Q39XC1_GEOMG Type II secretion system protein E OS=Geo...    35   1.9  
tr|B4EX04|B4EX04_PROMH Cell division protein OS=Proteus mirabili...    35   1.9  
tr|B4J6B5|B4J6B5_DROGR GH21135 OS=Drosophila grimshawi GN=GH2113...    35   2.4  
tr|A4CKB1|A4CKB1_9FLAO Outer membrane protein OmpA OS=Robiginita...    34   3.2  
tr|B8BYA7|B8BYA7_THAPS Predicted protein OS=Thalassiosira pseudo...    34   3.2  
tr|Q1LVF9|Q1LVF9_DANRE Novel kinase domain containing protein (F...    34   4.1  
tr|Q1A232|Q1A232_AMOPR 110 kDa actin binding protein interacting...    34   4.1  
tr|B6P927|B6P927_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|Q2VIK9|Q2VIK9_9PRIM RcNIP30 (Fragment) OS=Gorilla gorilla PE=...    33   7.0  
tr|B0EAG0|B0EAG0_ENTDI Putative uncharacterized protein OS=Entam...    33   7.0  
tr|Q6CI88|Q6CI88_YARLI YALI0A00616p OS=Yarrowia lipolytica GN=YA...    33   7.0  
tr|A7S787|A7S787_NEMVE Predicted protein OS=Nematostella vectens...    33   9.2  
tr|Q6C708|Q6C708_YARLI YALI0E04719p OS=Yarrowia lipolytica GN=YA...    33   9.2  
tr|A8N7J0|A8N7J0_COPC7 Predicted protein OS=Coprinopsis cinerea ...    33   9.2  

>tr|A9TPP1|A9TPP1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171239 PE=4 SV=1
          Length = 693

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = -2

Query: 330 ANRARQIEEDEMLAKFLQEDYGLEADEGNFALDDAHLARMLQEEENA 190
           A RARQ+ EDE +A+ LQE + LE   G+    D   ARMLQ+EEN+
Sbjct: 426 AERARQLSEDERVARELQEAFALEDMGGSQPPTDEMFARMLQDEENS 472


>tr|A5B191|A5B191_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037878 PE=4 SV=1
          Length = 625

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
 Frame = -2

Query: 414 GGMERPIDVDSLECPSSSATAERIVSAAAN-----RARQIEEDEMLAKFLQEDYGLEADE 250
           G ME  I++D  + P     A R   +  N     RARQIE DE+LA+ LQE    E   
Sbjct: 498 GVMEPVIEIDE-QSPEIRHVASRNGGSMNNDDSDARARQIEADEILARELQEQLYHEMPV 556

Query: 249 GNFALDDAHLARMLQEEENARYT 181
                 DAH+A+MLQ++E  + T
Sbjct: 557 DGGVGIDAHIAQMLQQQEQVQPT 579


>tr|A2DVR7|A2DVR7_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_210100 PE=4 SV=1
          Length = 143

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 201 LPVTSAPSVHHPEQNFLHQLPDHNPPVETLPAFHL 305
           LP+   PS+H+P+Q F   +P   P +E++ A H+
Sbjct: 99  LPIAPQPSIHYPQQTFTSNIPHSLPTLESVGANHI 133


>tr|Q39XC1|Q39XC1_GEOMG Type II secretion system protein E
           OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
           / DSM 7210) GN=Gmet_0861 PE=4 SV=1
          Length = 642

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = -2

Query: 405 ERPIDVDSLECPSSSATAERIVSAAANRARQIEEDEMLAKFLQEDYGLEADEGNFALDDA 226
           ER ID + L      A  + I  A A R  ++ E+E LAK +   Y L     N    +A
Sbjct: 71  ERLIDQERLGQAREVAKRDGIPLARALRKLRVVEEEPLAKAVAVQYDLSFVHINTLEIEA 130

Query: 225 HLARMLQEEENARYTQ-QRVEPASQVANASIMQAA 124
            LAR +    N  Y Q QR+ P S++ N   +  A
Sbjct: 131 ELARYI----NPSYAQKQRIVPISKIGNTLTLAMA 161


>tr|B4EX04|B4EX04_PROMH Cell division protein OS=Proteus mirabilis
           (strain HI4320) GN=ftsY PE=4 SV=1
          Length = 612

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
 Frame = -2

Query: 396 IDVDSLECPSSSATAERIVSAAANRARQIEEDEMLAKFLQEDYGLE----ADEGNFALDD 229
           ++ +     +  A AER+ +  A +AR  EE+      L+ +   +    A+    A + 
Sbjct: 70  LEAEQARQEAQRAEAERLAAERAEQARLAEEEAQRQAQLEAEQARQEAQRAEAERLAAER 129

Query: 228 AHLARMLQEEENARYTQQRVEPA---SQVANASIMQAARREMQRV 103
           A  AR L EEE  R  QQ  E A   +Q A A  + A R E  R+
Sbjct: 130 AEQAR-LAEEEAQRQAQQEAEQARQEAQRAEAERLAAERAEQARL 173


>tr|B4J6B5|B4J6B5_DROGR GH21135 OS=Drosophila grimshawi GN=GH21135
           PE=4 SV=1
          Length = 803

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
 Frame = -2

Query: 342 VSAAANRARQIEEDEMLAKFLQEDYGLEADEGNFALD----DAHLARMLQEEENARYTQQ 175
           V+A A  A  + ED+        D  + AD+G  AL     + H+A  LQ  E + Y +Q
Sbjct: 456 VAALAKEASALREDD--------DTTIRADDGVSALAAYIAEQHIANALQTTEPSAY-EQ 506

Query: 174 RVEPASQVANASIMQAARREMQRV 103
           R+E AS+ +++S     R + QR+
Sbjct: 507 RLEEASRSSSSSSSGYLRMDKQRI 530


>tr|A4CKB1|A4CKB1_9FLAO Outer membrane protein OmpA OS=Robiginitalea
           biformata HTCC2501 GN=RB2501_13319 PE=3 SV=1
          Length = 375

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 240 ALDDAHLARMLQEEENARYTQQRVEPASQVANASIMQAARREMQRV 103
           A + A  AR+LQE+E  R   QR E A + A A+   A +RE+  +
Sbjct: 217 AEEAAEQARLLQEQEEQRLAAQREEAARKAAEAARKDALKRELDSI 262


>tr|B8BYA7|B8BYA7_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_3621 PE=4 SV=1
          Length = 815

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
 Frame = -2

Query: 351 ERIVSAAANRARQIEEDEMLAKFLQEDYGLEADEGNFALDDAHLARMLQEEENARYTQQ- 175
           ERI +A A+  R++ E++  A+  Q +  L+ ++   A   A   RML+EE++A    Q 
Sbjct: 526 ERIAAAKADEERRLREEQEAAEKAQVELELKHEQERIAAAKADEERMLREEQDAAEKAQA 585

Query: 174 -----RVEPASQVANASIMQAARREMQRVL 100
                R +     A A   +  R E +  L
Sbjct: 586 ELELRREQERIAAAKADAERILREEQETAL 615


>tr|Q1LVF9|Q1LVF9_DANRE Novel kinase domain containing protein
           (Fragment) OS=Danio rerio GN=mylk4 PE=4 SV=1
          Length = 640

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -2

Query: 402 RPIDVDSLECPSSSATAERIVSAAANRARQIEEDEMLAKFLQEDYGLEADE 250
           R  +   L  P+SS   ++I++A   R  + EE+E   K  +E+ GLEA E
Sbjct: 287 RLTEESQLAAPTSSGQNDKIITATPERVEEEEEEEKELKEEEEEAGLEAAE 337


>tr|Q1A232|Q1A232_AMOPR 110 kDa actin binding protein interacting
           with anti-filamin antibody OS=Amoeba proteus PE=2 SV=1
          Length = 878

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -2

Query: 360 ATAERIVSAAANRARQIEEDEMLAKFLQEDYGLEADEGNFALDDAHLARMLQEEENA-RY 184
           A AE+    AA RA + EE+            +EA+     L++ HLAR+  EE+ A R 
Sbjct: 454 AAAEKAAREAAERAAREEEER-----------IEAERERIRLEEEHLARLQAEEDAALRA 502

Query: 183 TQQRVEPASQVANASIMQAA 124
            ++    A+Q   A   +AA
Sbjct: 503 AEEAAIAAAQAEAAEAAEAA 522