NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917500
Clone id YMU001_000101_F01
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCTGCTAGCAGGGAAGACGAGACATGGCTCAATTGGGGTTCTCCTACTGGAAAGCTAGA
ATGGGGTGTGAGTGGAGACGACCTTACCCGTTTTCGCAAATCTTTTTCATGCAAAGCATA
ACACACAGACATTTTACTCACGGCAGGAATCGAACTCAACACCCTCAGTCACACTTTTTT
TGGCCATCCCTAACTAGTTTTGTTACCCTAACTTGATTTTCACCTAGCTATTCTTTAAAA
TTTGGTCACTTTTGAGTTAGAATAGGCTCTTTTCTCTTTTGGCTTAAGCCCACCAAAGGT
ACCCCCCCAACGACTCAATTCATATATATGCGGCCTTTCATTCGAAGAAGACGACCAACT
TGTCGTCCCGTATCTATATCCATAGTTCCCTATCTCACTAGAGGAGGTTTGCACATTCAT
GCCTTGCAATGTTTACAAGTTATGTTCTTTATTCTTGTCTCCAAATGTATTCAAAAAAAA
AGCCTAGTGTTGATAAGTTGTCACTCAATTCCCTGATCTAAGAATCTACAAATGGGA
■■Homology search results ■■ -
sp_hit_id Q688R3
Definition sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica
Align length 26
Score (bit) 43.1
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917500|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_F01.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein...    43   8e-04
sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein...    40   0.007
sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein...    35   0.18 
sp|Q6H2Y3|BRS3_MACMU Bombesin receptor subtype-3 OS=Macaca mulat...    30   9.7  
sp|P32247|BRS3_HUMAN Bombesin receptor subtype-3 OS=Homo sapiens...    30   9.7  
sp|Q8NXN3|HIS8_STAAW Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|A8YZZ5|HIS8_STAAT Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|Q6GBA6|HIS8_STAAS Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|P67725|HIS8_STAAN Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|P67724|HIS8_STAAM Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|A6QF32|HIS8_STAAE Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|Q5HHU9|HIS8_STAAC Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|A5IQS7|HIS8_STAA9 Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|Q2G087|HIS8_STAA8 Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|Q2FIR7|HIS8_STAA3 Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|A6TZK2|HIS8_STAA2 Histidinol-phosphate aminotransferase OS=St...    30   9.8  
sp|A7WZL0|HIS8_STAA1 Histidinol-phosphate aminotransferase OS=St...    30   9.8  

>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33
           OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2
           SV=1
          Length = 601

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP GKL+WGV GD+L + RKS S
Sbjct: 526 DWGSPDGKLDWGVQGDELHKLRKSAS 551


>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24
           OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2
           SV=1
          Length = 764

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 23  TWLNWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +W  WGSP+G  +WGV+G++L + R+S S
Sbjct: 650 SWSKWGSPSGTPDWGVNGEELGKLRRSSS 678


>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50
           OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2
           SV=1
          Length = 657

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 11  REDETWLNWGSPTGKLEWGVSGDDLTRFRK 100
           R    W   GSP GK++WGV  ++L R R+
Sbjct: 557 RNSSAWGTVGSPMGKVDWGVDSEELVRLRR 586


>sp|Q6H2Y3|BRS3_MACMU Bombesin receptor subtype-3 OS=Macaca mulatta
           GN=BRS3 PE=2 SV=1
          Length = 398

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 306 PNDSIHIYAAFHSKKTTNLSSRIYIHSSLSH*RRFAHSCLAMFTSYVLYSCLQMYSK 476
           PN  +++Y +F S+   + S+  +I +  S    F++SC+  F  Y L    Q + K
Sbjct: 285 PNHLLYLYHSFTSQTYVDPSAMHFIFTIFSRVLAFSNSCVNPFALYWLSKTFQKHFK 341


>sp|P32247|BRS3_HUMAN Bombesin receptor subtype-3 OS=Homo sapiens
           GN=BRS3 PE=1 SV=1
          Length = 399

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 306 PNDSIHIYAAFHSKKTTNLSSRIYIHSSLSH*RRFAHSCLAMFTSYVLYSCLQMYSK 476
           PN  +++Y +F S+   + S+  +I +  S    F++SC+  F  Y L    Q + K
Sbjct: 286 PNHLLYLYHSFTSQTYVDPSAMHFIFTIFSRVLAFSNSCVNPFALYWLSKSFQKHFK 342


>sp|Q8NXN3|HIS8_STAAW Histidinol-phosphate aminotransferase
           OS=Staphylococcus aureus (strain MW2) GN=hisC PE=3 SV=1
          Length = 352

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 106 FMQSITHRHFTHGRNRTQHPQSHFFWPSLTSFV 204
           +++ +TH++        Q PQS +F PS T+F+
Sbjct: 269 YLKEVTHKNSVERERFYQLPQSEYFLPSQTNFI 301


>sp|A8YZZ5|HIS8_STAAT Histidinol-phosphate aminotransferase
           OS=Staphylococcus aureus (strain USA300 / TCH1516)
           GN=hisC PE=3 SV=1
          Length = 352

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 106 FMQSITHRHFTHGRNRTQHPQSHFFWPSLTSFV 204
           +++ +TH++        Q PQS +F PS T+F+
Sbjct: 269 YLKEVTHKNSVERERFYQLPQSEYFLPSQTNFI 301


>sp|Q6GBA6|HIS8_STAAS Histidinol-phosphate aminotransferase
           OS=Staphylococcus aureus (strain MSSA476) GN=hisC PE=3
           SV=1
          Length = 352

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 106 FMQSITHRHFTHGRNRTQHPQSHFFWPSLTSFV 204
           +++ +TH++        Q PQS +F PS T+F+
Sbjct: 269 YLKEVTHKNSVERERFYQLPQSEYFLPSQTNFI 301


>sp|P67725|HIS8_STAAN Histidinol-phosphate aminotransferase
           OS=Staphylococcus aureus (strain N315) GN=hisC PE=1 SV=1
          Length = 352

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 106 FMQSITHRHFTHGRNRTQHPQSHFFWPSLTSFV 204
           +++ +TH++        Q PQS +F PS T+F+
Sbjct: 269 YLKEVTHKNSVERERFYQLPQSEYFLPSQTNFI 301


>sp|P67724|HIS8_STAAM Histidinol-phosphate aminotransferase
           OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
           GN=hisC PE=1 SV=1
          Length = 352

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 106 FMQSITHRHFTHGRNRTQHPQSHFFWPSLTSFV 204
           +++ +TH++        Q PQS +F PS T+F+
Sbjct: 269 YLKEVTHKNSVERERFYQLPQSEYFLPSQTNFI 301
tr_hit_id A7Q2A5
Definition tr|A7Q2A5|A7Q2A5_VITVI Chromosome chr13 scaffold_45, whole genome shotgun sequence OS=Vitis vinifera
Align length 29
Score (bit) 45.1
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917500|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_F01.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q2A5|A7Q2A5_VITVI Chromosome chr13 scaffold_45, whole genom...    45   0.002
tr|B6SZ87|B6SZ87_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.004
tr|B7EYA7|B7EYA7_ORYSJ cDNA clone:001-202-E04, full insert seque...    43   0.009
tr|A3AZK6|A3AZK6_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.009
tr|A2XZZ3|A2XZZ3_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009
tr|Q9LY47|Q9LY47_ARATH Putative uncharacterized protein F27K19_1...    42   0.020
tr|Q93ZS9|Q93ZS9_ARATH Putative uncharacterized protein At3g5598...    42   0.020
tr|A9PAD3|A9PAD3_POPTR Putative uncharacterized protein OS=Popul...    42   0.020
tr|A7NYE3|A7NYE3_VITVI Chromosome chr6 scaffold_3, whole genome ...    42   0.020
tr|A5BAL2|A5BAL2_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|Q9XEE6|Q9XEE6_ARATH Hypothetical Cys-3-His zinc finger protei...    40   0.076
tr|Q0GIK4|Q0GIK4_CAPAN Cys-3-His zinc finger protein (Fragment) ...    40   0.076
tr|B7F656|B7F656_ORYSJ cDNA clone:J013153K17, full insert sequen...    40   0.076
tr|A9NXG9|A9NXG9_PICSI Putative uncharacterized protein OS=Picea...    40   0.076
tr|A5BK99|A5BK99_VITVI Putative uncharacterized protein OS=Vitis...    40   0.076
tr|A3ALR0|A3ALR0_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.076
tr|A2XL03|A2XL03_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.076
tr|A7NZQ9|A7NZQ9_VITVI Chromosome chr6 scaffold_3, whole genome ...    40   0.100
tr|A5BC96|A5BC96_VITVI Putative uncharacterized protein OS=Vitis...    40   0.100
tr|B1Q4U6|B1Q4U6_9ROSI Transcription factor OS=Bruguiera gymnorh...    39   0.22 
tr|Q9LUZ4|Q9LUZ4_ARATH Zinc finger transcription factor-like pro...    38   0.29 
tr|B7EDZ8|B7EDZ8_ORYSJ cDNA clone:J013116A14, full insert sequen...    35   1.9  
tr|A2Q3L5|A2Q3L5_MEDTR Zinc finger, CCCH-type OS=Medicago trunca...    35   1.9  
tr|A2YMS4|A2YMS4_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|Q2TN85|Q2TN85_WHEAT Putative Zn-finger transcription factor (...    35   3.2  
tr|Q4P2Q1|Q4P2Q1_USTMA Putative uncharacterized protein OS=Ustil...    33   7.3  
tr|A1CDH3|A1CDH3_ASPCL Glutamine-serine-proline rich protein, pu...    33   7.3  
tr|B7ZYH4|B7ZYH4_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.3  
tr|Q3D2D6|Q3D2D6_STRAG Cell wall surface anchor family protein O...    33   9.5  

>tr|A7Q2A5|A7Q2A5_VITVI Chromosome chr13 scaffold_45, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028802001
           PE=4 SV=1
          Length = 713

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 23  TWLNWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +W  WGSPTGKL+W V+GD++ R ++S S
Sbjct: 604 SWSKWGSPTGKLDWSVNGDEMGRLKRSSS 632


>tr|B6SZ87|B6SZ87_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 201

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP G+L+WGV GD+L +FRKS S
Sbjct: 130 DWGSPDGRLDWGVQGDELHKFRKSAS 155


>tr|B7EYA7|B7EYA7_ORYSJ cDNA clone:001-202-E04, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 601

 Score = 43.1 bits (100), Expect = 0.009
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP GKL+WGV GD+L + RKS S
Sbjct: 526 DWGSPDGKLDWGVQGDELHKLRKSAS 551


>tr|A3AZK6|A3AZK6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016228 PE=4 SV=1
          Length = 579

 Score = 43.1 bits (100), Expect = 0.009
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP GKL+WGV GD+L + RKS S
Sbjct: 504 DWGSPDGKLDWGVQGDELHKLRKSAS 529


>tr|A2XZZ3|A2XZZ3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18300 PE=4 SV=1
          Length = 579

 Score = 43.1 bits (100), Expect = 0.009
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP GKL+WGV GD+L + RKS S
Sbjct: 504 DWGSPDGKLDWGVQGDELHKLRKSAS 529


>tr|Q9LY47|Q9LY47_ARATH Putative uncharacterized protein F27K19_160
           OS=Arabidopsis thaliana GN=F27K19_160 PE=4 SV=1
          Length = 586

 Score = 42.0 bits (97), Expect = 0.020
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP GKLEWG+ G++L + R+S S
Sbjct: 498 DWGSPNGKLEWGMKGEELNKMRRSVS 523


>tr|Q93ZS9|Q93ZS9_ARATH Putative uncharacterized protein At3g55980
           OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1
          Length = 580

 Score = 42.0 bits (97), Expect = 0.020
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP GKLEWG+ G++L + R+S S
Sbjct: 492 DWGSPNGKLEWGMKGEELNKMRRSVS 517


>tr|A9PAD3|A9PAD3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 710

 Score = 42.0 bits (97), Expect = 0.020
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +2

Query: 23  TWLNWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +W  WGSP GKL+W V+GD+L R  +S S
Sbjct: 607 SWSKWGSPNGKLDWSVNGDELGRLCRSSS 635


>tr|A7NYE3|A7NYE3_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024088001
           PE=4 SV=1
          Length = 598

 Score = 42.0 bits (97), Expect = 0.020
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP GKL+WG+ G++L + RKS S
Sbjct: 506 DWGSPDGKLDWGIQGEELNKLRKSAS 531


>tr|A5BAL2|A5BAL2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006556 PE=4 SV=1
          Length = 893

 Score = 42.0 bits (97), Expect = 0.020
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +2

Query: 32  NWGSPTGKLEWGVSGDDLTRFRKSFS 109
           +WGSP GKL+WG+ G++L + RKS S
Sbjct: 790 DWGSPDGKLDWGIQGEELNKLRKSAS 815