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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917502
Clone id YMU001_000101_F03
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGACATCCTTACCGTCTATTATGCCTGGGCAATGCAACAAGTTTCTCCAGAAGAGATGGA
AGAGGGAGAGATTTTTCCCCAGTGGCAACTTAGGGAGATGCAGCAGTTAGGGGTGCAGGC
AATTATATAATGCCATCATATAATTTTGTCCTGTTTTTAGTCAAATCCAAGTTTTGAGGG
GAAAAGCAGCAACAAAGAAAATTACTTTTGAGTTGGAATTGGAGGCAGTTTGCATGCAGA
TAAGCATCAGGTTGTCCGAATGCCTCCTACAAAGATGGGATTGCAGTGTGGCAAAACTTA
GTGTCACATTCATGATTGTGGACGCCCTCGCTCAAAAATAGTGCAAGGCGAAGAATCAAA
TATAATCGCCTCGGTGTGCTTTTGGTTGCTGCTGTAAATAAGTTATAATGGGCACTGATC
AGAGATTTTGTAGCTTTACGATTTCTTAGTAGTATGCGTCATCTTTAGATTGTTTAGATG
AGACCATACATTGCGTGGTCTGTATACCGCAGTGATTTTGCGGAGAGTACATTATGTCAA
TTTACATGT
■■Homology search results ■■ -
sp_hit_id Q3SZV0
Definition sp|Q3SZV0|TTC36_BOVIN Tetratricopeptide repeat protein 36 OS=Bos taurus
Align length 26
Score (bit) 30.8
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917502|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_F03.
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3SZV0|TTC36_BOVIN Tetratricopeptide repeat protein 36 OS=Bos...    31   4.5  

>sp|Q3SZV0|TTC36_BOVIN Tetratricopeptide repeat protein 36 OS=Bos
           taurus GN=TTC36 PE=2 SV=1
          Length = 188

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +2

Query: 50  EEMEEGEIFPQWQLREMQQLGVQAII 127
           +E++EGE+FP+ QL + + L +QA+I
Sbjct: 34  KEVDEGEVFPRAQLEQSKALELQAVI 59
tr_hit_id A7Q1T7
Definition tr|A7Q1T7|A7Q1T7_VITVI Chromosome chr7 scaffold_44, whole genome shotgun sequence OS=Vitis vinifera
Align length 41
Score (bit) 67.0
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917502|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_F03.
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q1T7|A7Q1T7_VITVI Chromosome chr7 scaffold_44, whole genome...    67   6e-10
tr|A9TC25|A9TC25_PHYPA Predicted protein (Fragment) OS=Physcomit...    62   2e-08
tr|A9S8R1|A9S8R1_PHYPA Predicted protein OS=Physcomitrella paten...    62   2e-08
tr|Q8S8E5|Q8S8E5_ARATH Putative uncharacterized protein At2g3607...    54   7e-06
tr|Q5XF06|Q5XF06_ARATH At2g36070 OS=Arabidopsis thaliana PE=2 SV=1     54   7e-06
tr|Q9SIL8|Q9SIL8_ARATH Putative mitochondrial inner membrane tra...    51   5e-05
tr|Q1PF33|Q1PF33_ARATH Mitochondrial import inner membrane trans...    51   5e-05
tr|Q69V11|Q69V11_ORYSJ Os07g0409700 protein OS=Oryza sativa subs...    50   1e-04
tr|B8B5E7|B8B5E7_ORYSI Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A3BIW2|A3BIW2_ORYSJ Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|B4FDK0|B4FDK0_MAIZE Putative uncharacterized protein OS=Zea m...    49   1e-04
tr|A4S4J8|A4S4J8_OSTLU MPT family transporter: inner membrane tr...    33   9.8  

>tr|A7Q1T7|A7Q1T7_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028592001
           PE=4 SV=1
          Length = 451

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +2

Query: 5   ILTVYYAWAMQQVSPEEMEEGEIFPQWQLREMQQLGVQAII 127
           I TVYYAWAMQQV  EE+ EG I+P W+LREMQQLGVQA+I
Sbjct: 411 IHTVYYAWAMQQVDAEELGEGAIYPIWRLREMQQLGVQALI 451


>tr|A9TC25|A9TC25_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_143404 PE=4 SV=1
          Length = 354

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +2

Query: 2   DILTVYYAWAMQQVSPEEMEEGEIFPQWQLREMQQLGVQAII 127
           DI TV+YAWAMQQ SPEE   GE   +W+LREMQQ G+QA+I
Sbjct: 313 DIHTVFYAWAMQQESPEETNRGEFHTRWKLREMQQAGMQALI 354


>tr|A9S8R1|A9S8R1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163495 PE=4 SV=1
          Length = 428

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +2

Query: 2   DILTVYYAWAMQQVSPEEMEEGEIFPQWQLREMQQLGVQAII 127
           DI TV+YAWAMQQ SPEE   GE   +W+LREMQQ G+QA+I
Sbjct: 387 DIHTVFYAWAMQQESPEETSHGEFQTRWKLREMQQAGIQALI 428


>tr|Q8S8E5|Q8S8E5_ARATH Putative uncharacterized protein At2g36070
           OS=Arabidopsis thaliana GN=At2g36070 PE=2 SV=1
          Length = 499

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = +2

Query: 5   ILTVYYAWAMQQVSPEEMEEGEIFPQWQLREMQQLGVQAII 127
           I TVYY WAMQQV   E+ E  I+P W+LREM + GVQA+I
Sbjct: 459 IHTVYYDWAMQQVDAAELGEDAIYPIWRLREMLRAGVQALI 499


>tr|Q5XF06|Q5XF06_ARATH At2g36070 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 469

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = +2

Query: 5   ILTVYYAWAMQQVSPEEMEEGEIFPQWQLREMQQLGVQAII 127
           I TVYY WAMQQV   E+ E  I+P W+LREM + GVQA+I
Sbjct: 429 IHTVYYDWAMQQVDAAELGEDAIYPIWRLREMLRAGVQALI 469


>tr|Q9SIL8|Q9SIL8_ARATH Putative mitochondrial inner membrane
           translocating protein OS=Arabidopsis thaliana
           GN=At2g20510 PE=2 SV=2
          Length = 472

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = +2

Query: 5   ILTVYYAWAMQQVSPEEMEEGEIFPQWQLREMQQLGVQAII 127
           I TVY+ WAMQQV   E+ E  I+P W+LREM + GVQA+I
Sbjct: 432 IHTVYHEWAMQQVETTELGEDAIYPIWRLREMCRNGVQALI 472


>tr|Q1PF33|Q1PF33_ARATH Mitochondrial import inner membrane
           translocase subunit TIM44 OS=Arabidopsis thaliana
           GN=At2g20510 PE=2 SV=1
          Length = 474

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = +2

Query: 5   ILTVYYAWAMQQVSPEEMEEGEIFPQWQLREMQQLGVQAII 127
           I TVY+ WAMQQV   E+ E  I+P W+LREM + GVQA+I
Sbjct: 434 IHTVYHEWAMQQVETTELGEDAIYPIWRLREMCRNGVQALI 474


>tr|Q69V11|Q69V11_ORYSJ Os07g0409700 protein OS=Oryza sativa subsp.
           japonica GN=P0492E07.122 PE=2 SV=1
          Length = 475

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
 Frame = +2

Query: 5   ILTVYYAWAMQQVSPEEM-EEGEIFPQWQLREMQQLGVQAII 127
           I TV+YAWAMQ +  +E+ EE   +P W+LRE+QQ+G++A+I
Sbjct: 434 IQTVFYAWAMQLMDSDEVPEEESYYPVWRLREIQQVGIKALI 475


>tr|B8B5E7|B8B5E7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25725 PE=4 SV=1
          Length = 475

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
 Frame = +2

Query: 5   ILTVYYAWAMQQVSPEEM-EEGEIFPQWQLREMQQLGVQAII 127
           I TV+YAWAMQ +  +E+ EE   +P W+LRE+QQ+G++A+I
Sbjct: 434 IQTVFYAWAMQLMDSDEVPEEESYYPVWRLREIQQVGIKALI 475


>tr|A3BIW2|A3BIW2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022984 PE=4 SV=1
          Length = 417

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
 Frame = +2

Query: 5   ILTVYYAWAMQQVSPEEM-EEGEIFPQWQLREMQQLGVQAII 127
           I TV+YAWAMQ +  +E+ EE   +P W+LRE+QQ+G++A+I
Sbjct: 376 IQTVFYAWAMQLMDSDEVPEEESYYPVWRLREIQQVGIKALI 417