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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917507
Clone id YMU001_000101_F11
Library
Length 394
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAAATGTTATTTTGGAATAACTCTACTGTTCCTTTTGTGGTTACATAATCCCGAATGGTA
GGTTGACTGCCATCTGCAATGCACTCTCTTATCCACTGCTCTACATGGCTTCCATTCCAG
AAACGTGAAATGAGCATTGGACGCTCTATGTGGCGGACCATGGCAAGTGGATAAATAATG
CCGCGATGAGCGATGTCCAAAGTTGTGGCCTTGTCCTTGACCTACTGATCCACTGGGGGT
CCATGCAAGTGGACTTTGAAGATTTTTTCCGCATACAATGGCTCTTTAAATGCAGGGTGT
GTGACACCTACACACTTCACGTGTGCCCATCTCCCTTCTCCCAGCTGTATAGCCTGTATG
TTGAAGATTGTAGTTTCTGGCAAAAGATGTAGTA
■■Homology search results ■■ -
sp_hit_id Q2PC93
Definition sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus
Align length 56
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917507|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_F11.
         (394 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    34   0.20 
sp|Q8X092|ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11 OS=Ne...    32   1.3  
sp|Q3ID16|RLMN_PSEHT Ribosomal RNA large subunit methyltransfera...    30   2.9  
sp|Q980M4|TRM56_SULSO tRNA ribose 2'-O-methyltransferase aTrm56 ...    30   2.9  
sp|Q8INF0|GCY8E_DROME Soluble guanylate cyclase 88E OS=Drosophil...    30   3.7  
sp|Q8NEC5|CTSR1_HUMAN Cation channel sperm-associated protein 1 ...    30   4.9  
sp|A5GFW5|CASS4_PIG Cas scaffolding protein family member 4 OS=S...    29   6.4  
sp|Q2NS37|RLMN_SODGM Ribosomal RNA large subunit methyltransfera...    29   8.3  
sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis pr...    29   8.3  
sp|Q9QX05|TLR4_RAT Toll-like receptor 4 OS=Rattus norvegicus GN=...    29   8.4  
sp|Q9ZSS6|THD1_ARATH Threonine dehydratase biosynthetic, chlorop...    29   8.4  

>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
          Length = 5255

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -2

Query: 324  TREVCRCHTPCI*RAIVCGKNLQSPLAWTPSGSVGQGQGHNFGHRSSRHYLSTCHG 157
            TREV  CHTPC       G +     +WTP     +   H+   R  RH    C G
Sbjct: 2833 TREVRECHTPCATAEPSSGWS-----SWTPWSPCSRSCFHHVDQRGRRHRFRHCEG 2883


>sp|Q8X092|ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11
           OS=Neurospora crassa GN=alg-11 PE=3 SV=1
          Length = 556

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -3

Query: 353 AIQLGEGRWAHVKCVGVT--HPAFKEPLYA--EKIFKVHLHGPPVD 228
           AI+  + RW   KCV  T  H   KE + +  E+ F +HLH P V+
Sbjct: 122 AIRATQKRWPKAKCVVYTGDHDVSKEAILSRVEQRFNIHLHPPTVN 167


>sp|Q3ID16|RLMN_PSEHT Ribosomal RNA large subunit methyltransferase
           N OS=Pseudoalteromonas haloplanktis (strain TAC 125)
           GN=rlmN PE=3 SV=1
          Length = 376

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 62  VDCHLQCTLLSTALHGFHSRNVK*ALDALCGGPWQVDK 175
           V C L+CT  STA  GF +RN+K  +  + G  W+V K
Sbjct: 113 VGCALECTFCSTAQQGF-NRNLK--VSEIIGQVWRVAK 147


>sp|Q980M4|TRM56_SULSO tRNA ribose 2'-O-methyltransferase aTrm56
           OS=Sulfolobus solfataricus GN=SSO0267 PE=3 SV=1
          Length = 160

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 84  LSYPLLYMASIPET*NEHWTLYVADHGKWINNAAMSDVQSCGLVLDLLIHWGSMQVDFED 263
           + YPLL +    +   E W  + AD+   I N   S+V +  + LD +     + ++FED
Sbjct: 85  IKYPLLIIVGAEKV--EGWYYHNADYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFED 142


>sp|Q8INF0|GCY8E_DROME Soluble guanylate cyclase 88E OS=Drosophila
            melanogaster GN=Gyc88E PE=1 SV=3
          Length = 947

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -2

Query: 300  TPCI*RAIVCGKNLQSP-LAWTP-----SGSVGQGQGHNFGHRSSRHYLSTCHGPPHRAS 139
            TP    A+VC    +SP +A  P       S  +G G   G + S   +S    PPHR++
Sbjct: 883  TPTALAAVVCPMRTKSPPMAVAPVMHMVQASTSKGDGQRPGSKDSVSSISLHSPPPHRSN 942

Query: 138  NA 133
            +A
Sbjct: 943  SA 944


>sp|Q8NEC5|CTSR1_HUMAN Cation channel sperm-associated protein 1
           OS=Homo sapiens GN=CATSPER1 PE=1 SV=2
          Length = 780

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 207 HNFGH-RSSRHYLSTCHGPPHRASNAHF--TFLEWKPCRAVDKRVHCRWQSTYHSGLCNH 37
           H  GH R+  HY    HG PH+   +H    F ++   +A+   VH   QS +HS   NH
Sbjct: 32  HRPGHSRALHHYELHHHGVPHQRGESHHPPEFQDFHD-QALSSHVH---QSHHHSEARNH 87

Query: 36  KR 31
            R
Sbjct: 88  GR 89


>sp|A5GFW5|CASS4_PIG Cas scaffolding protein family member 4 OS=Sus
           scrofa GN=CASS4 PE=3 SV=1
          Length = 784

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 210 GHNFGHRSSRHYLSTCHGPPHRASNAH 130
           G   GHR    Y+S+ H PP+  + +H
Sbjct: 261 GEELGHRGLPRYMSSFHSPPNSIARSH 287


>sp|Q2NS37|RLMN_SODGM Ribosomal RNA large subunit methyltransferase
           N OS=Sodalis glossinidius (strain morsitans) GN=rlmN
           PE=3 SV=1
          Length = 393

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 62  VDCHLQCTLLSTALHGFHSRNVK*ALDALCGGPWQVDK 175
           V C LQCT  STA  GF +RN++  +  + G  W+  K
Sbjct: 132 VGCALQCTFCSTAQQGF-NRNLR--VSEIIGQVWRAAK 166


>sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis protein
            2 OS=Homo sapiens GN=RIMS2 PE=1 SV=2
          Length = 1411

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -2

Query: 246  AWTPSGSVGQGQGHNFGHRSSR----HYLSTCHGPPHRASNAHFTFLEWKPCRAVDKRVH 79
            +W+PS    Q +    G R +R    HY +      HR  + H++    + C A D++ +
Sbjct: 1028 SWSPSVPPPQSRNVEQGLRGTRTMTGHYNTISRMDRHRVMDDHYSPDRDRDCEAADRQPY 1087

Query: 78   CRWQST 61
             R +ST
Sbjct: 1088 HRSRST 1093


>sp|Q9QX05|TLR4_RAT Toll-like receptor 4 OS=Rattus norvegicus
           GN=Tlr4 PE=2 SV=1
          Length = 835

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 255 FEDFFRIQWLFKCRVCDTYTLHVCPSPFSQLYSLYVEDCSF 377
           F+  +R+Q L    +     L + PS + QLYSL   DCSF
Sbjct: 514 FDTLYRLQLL---NMSHNNLLFLDPSHYKQLYSLRTLDCSF 551
tr_hit_id A9BZG9
Definition tr|A9BZG9|A9BZG9_DELAS Thiamine pyrophosphate protein central region OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
Align length 27
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917507|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_F11.
         (394 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9BZG9|A9BZG9_DELAS Thiamine pyrophosphate protein central re...    35   2.4  
tr|Q46NN4|Q46NN4_RALEJ Cyclopropane-fatty-acyl-phospholipid synt...    33   5.4  
tr|Q6TYQ8|Q6TYQ8_SAISC Sperm ion channel (Fragment) OS=Saimiri s...    33   5.4  
tr|A7NP00|A7NP00_ROSCS Type II secretion system protein E OS=Ros...    33   5.4  
tr|A5UUG2|A5UUG2_ROSS1 Type II secretion system protein E OS=Ros...    33   5.4  
tr|Q6ZQ55|Q6ZQ55_MOUSE MKIAA0751 protein (Fragment) OS=Mus muscu...    33   7.1  
tr|Q0VF51|Q0VF51_MOUSE Rims2 protein OS=Mus musculus GN=Rims2 PE...    33   7.1  
tr|B7FIM4|B7FIM4_MEDTR Putative uncharacterized protein OS=Medic...    33   7.1  
tr|B3MVQ1|B3MVQ1_DROAN GF22402 OS=Drosophila ananassae GN=GF2240...    33   9.2  

>tr|A9BZG9|A9BZG9_DELAS Thiamine pyrophosphate protein central
           region OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
           GN=Daci_2931 PE=3 SV=1
          Length = 627

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 241 DPQWISRSRTRPQLWTSLIAALFIHLP 161
           DPQW + SR R   W   +AAL +H+P
Sbjct: 367 DPQWTADSRARAAAWAERVAALTLHVP 393


>tr|Q46NN4|Q46NN4_RALEJ Cyclopropane-fatty-acyl-phospholipid
           synthase OS=Ralstonia eutropha (strain JMP134)
           GN=Reut_C6098 PE=4 SV=1
          Length = 414

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 162 HGPPHRASNAHFTFLEWKPCRAVDKRVHCRWQSTYHSG 49
           +G PH+A  A  T L+W+ C AV +     +   Y +G
Sbjct: 55  YGDPHQAPGARLTLLDWRACEAVMRAGDIGFAEAYRAG 92


>tr|Q6TYQ8|Q6TYQ8_SAISC Sperm ion channel (Fragment) OS=Saimiri
           sciureus GN=CATSPER1 PE=4 SV=1
          Length = 387

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 234 SGSVGQGQGHNFGHRSSRHYLSTCHGPPH 148
           S S   GQGH  GHR S H   + HG PH
Sbjct: 25  SHSSPPGQGHRSGHRGSHHRHKSHHGVPH 53


>tr|A7NP00|A7NP00_ROSCS Type II secretion system protein E
           OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
           GN=Rcas_3241 PE=4 SV=1
          Length = 478

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 179 IIYPLAMVRHIER--PMLISRFWNGSHVEQWIRECIADGSQPTIRDYVTTKGTVE 21
           II PL   R I+R  PM+ +R  +GS V   I  C  DG   TIR +   K TVE
Sbjct: 171 IIRPLG--RRIDRKWPMVDARLPDGSRVNAIIPPCAIDGPSITIRKFAKKKLTVE 223


>tr|A5UUG2|A5UUG2_ROSS1 Type II secretion system protein E
           OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_1876 PE=4
           SV=1
          Length = 477

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 179 IIYPLAMVRHIER--PMLISRFWNGSHVEQWIRECIADGSQPTIRDYVTTKGTVE 21
           II PL   R I+R  PM+ +R  +GS V   I  C  DG   TIR +   K TVE
Sbjct: 170 IIRPLG--RRIDRKWPMVDARLPDGSRVNAIIPPCAIDGPSITIRKFAKKKLTVE 222


>tr|Q6ZQ55|Q6ZQ55_MOUSE MKIAA0751 protein (Fragment) OS=Mus musculus
           GN=Rims2 PE=2 SV=1
          Length = 1297

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 246 AWTPSGSVGQG---QGHNFGHRSSRHYLSTCHGPPHRASNAHFTFLEWKPCRAVDKRVHC 76
           +W+PS    Q    QGH  G R++ HY +      HR  + H++    + C A D++ + 
Sbjct: 718 SWSPSAPPPQRNVEQGHR-GTRATGHYNTISRMDRHRVMDDHYSSDRDRDCEAADRQPYH 776

Query: 75  RWQST 61
           R +ST
Sbjct: 777 RSRST 781


>tr|Q0VF51|Q0VF51_MOUSE Rims2 protein OS=Mus musculus GN=Rims2 PE=2
            SV=1
          Length = 1550

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 246  AWTPSGSVGQG---QGHNFGHRSSRHYLSTCHGPPHRASNAHFTFLEWKPCRAVDKRVHC 76
            +W+PS    Q    QGH  G R++ HY +      HR  + H++    + C A D++ + 
Sbjct: 997  SWSPSAPPPQRNVEQGHR-GTRATGHYNTISRMDRHRVMDDHYSSDRDRDCEAADRQPYH 1055

Query: 75   RWQST 61
            R +ST
Sbjct: 1056 RSRST 1060


>tr|B7FIM4|B7FIM4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 255

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 211 LSLTY*STGGPCKWTLKIFSAYNGSLNAGCVTPTHFTCAHLPSPSCIACMLKIVVSG 381
           LS  Y + GG  KW +   +     L A  + PT+F    +P+P  +   L  VV G
Sbjct: 72  LSRVYYANGGQSKWIISWVAVVGWPLIALILLPTYFVTKTVPTPLSLILFLSYVVLG 128


>tr|B3MVQ1|B3MVQ1_DROAN GF22402 OS=Drosophila ananassae GN=GF22402
           PE=4 SV=1
          Length = 723

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 240 TPSGSVGQGQGHNFGHRSSRHYLSTCHGPPHRASN 136
           T   S G G GH  GH    H+ ++ HG  H+  N
Sbjct: 476 THHSSHGHGHGHGHGHGHGHHHSTSSHGSHHQEKN 510