BP917513
Clone id YMU001_000101_G06
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTGTTGATACAAAGCAAAACTGCATTCACACACAGTTCATCTGTTTACAAAGTACAGCAG
GCACATGCAATGCTAGACCTCAAAGAAACACTAGCGCCCAAGTGTGCCAAGGCTCATCGT
AGATTGAAGACCATGCTGAAAAGAATAAGGAAAGCCGTCTTTAAGGTGGGTATAGTGCCC
AGTATGAGCTTGAGCTGGAAACCTCTGGCACTGCCAATATGCATCGGAATGATTTTGACC
ATAATGCGCATAGGAAACATCTGGGTAACATGACTCTACTCGAGGTCCTCTGAAAGGTAG
AGTTGGCATATAGGTTGACTGTTCCACCTGTAATTGAGGAGCCCAAGGACCATCCAGATG
AGGATATTTGTCATACACATTGATAGGAAAGTACATCCTCTGCAAGGCTGGAAAAATCGC
GCTTGCACTGGGGTCTAACAGCTGAGGATACCTCTTATAACTACGGTCATAATCTGGATC
TTTCATATCTTATTCTCGCAGGTACTC
■■Homology search results ■■ -
sp_hit_id Q9I1M2
Definition sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa
Align length 98
Score (bit) 28.1
E-value 4.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917513|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_G06.
(507 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alph... 28 4.3
sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1 30 6.6
sp|Q9Y7Y8|SYQ_SCHPO Probable glutaminyl-tRNA synthetase OS=Schiz... 30 8.6
sp|A2A9I7|DMRTB_MOUSE Doublesex- and mab-3-related transcription... 30 8.6

>sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alpha
OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1
Length = 410

Score = 28.1 bits (61), Expect(2) = 4.3
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Frame = -1

Query: 393 YFPINVYDKYPHLDGPWAPQLQVEQSTYMPTLPFRGPRV---ESCYPDVSYAHYGQNHSD 223
Y + V D H GPW PQL EQ RG R + Q
Sbjct: 52 YSLVRVLDDDGHAVGPWNPQLSNEQL-------LRGMRAMLKTRLFDARMLTAQRQKKLS 104

Query: 222 AYWQCQRFPAQAHTGHYTHLKDG---FPYSFQHGLQST 118
Y QC A A T H L+DG FP Q G+ T
Sbjct: 105 FYMQCLGEEAIA-TAHTLALRDGDMCFPTYRQQGILIT 141



Score = 20.4 bits (41), Expect(2) = 4.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3

Query: 436 RPQCKRDFSSL 404
RP CK DFS L
Sbjct: 17 RPGCKTDFSYL 27


>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
Length = 5255

Score = 30.0 bits (66), Expect = 6.6
Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 23/104 (22%)
Frame = -1

Query: 345 WAPQLQVEQSTYMPTLPFRGPRVESCYPDVSYAHYGQ---------------NHSDAYWQ 211
WAP T +PT+P G C P GQ ++SD
Sbjct: 1596 WAPPAP----TQLPTVPANGTAAPVCGPYEFPCRSGQCVPRGWVCDSEADCPDNSDELG- 1650

Query: 210 CQR------FPAQ--AHTGHYTHLKDGFPYSFQHGLQSTMSLGT 103
C R FP AH HY HL DG P+ H +S + G+
Sbjct: 1651 CNRSCVLGHFPCALGAHCIHYDHLCDGIPHCPDHSDESDDNCGS 1694


>sp|Q9Y7Y8|SYQ_SCHPO Probable glutaminyl-tRNA synthetase
OS=Schizosaccharomyces pombe GN=SPBC342.02 PE=2 SV=1
Length = 811

Score = 29.6 bits (65), Expect = 8.6
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -1

Query: 456 KRYPQLLDPSASAIFPALQRMYFPINVYDKYPHLDGPWAPQLQVEQSTYMPTLPFRGPRV 277
+RY QLL+PSASA+ H WAPQL+V+Q+ L GP+
Sbjct: 145 QRY-QLLNPSASAL----------------RQHALLKWAPQLEVKQTLDRKFLELLGPKT 187

Query: 276 E 274
E
Sbjct: 188 E 188


>sp|A2A9I7|DMRTB_MOUSE Doublesex- and mab-3-related transcription
factor B1 OS=Mus musculus GN=Dmrtb1 PE=2 SV=1
Length = 359

Score = 29.6 bits (65), Expect = 8.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1

Query: 351 GPWAPQ-LQVEQSTYMPTLPFRGPRVESCYPD 259
GP AP L+ S ++P L + PR E CYPD
Sbjct: 138 GPGAPGGLRDRSSAWLPQLMPQAPRPELCYPD 169


tr_hit_id B8LPB7
Definition tr|B8LPB7|B8LPB7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 137
Score (bit) 52.8
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917513|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_G06.
(507 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LPB7|B8LPB7_PICSI Putative uncharacterized protein OS=Picea... 53 1e-05
tr|A7QLJ1|A7QLJ1_VITVI Chromosome undetermined scaffold_119, who... 50 5e-05
tr|A5AV15|A5AV15_VITVI Putative uncharacterized protein OS=Vitis... 50 5e-05
tr|A9NUZ4|A9NUZ4_PICSI Putative uncharacterized protein OS=Picea... 49 1e-04
tr|Q652Q6|Q652Q6_ORYSJ cDNA clone:J013160I10, full insert sequen... 44 0.005
tr|A3C1N0|A3C1N0_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.005
tr|A2Z474|A2Z474_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.005
tr|A9SL97|A9SL97_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.085
tr|B4L3F5|B4L3F5_DROMO GI15536 OS=Drosophila mojavensis GN=GI155... 39 0.11
tr|A9SVC8|A9SVC8_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.15
tr|A5AMT9|A5AMT9_VITVI Putative uncharacterized protein (Chromos... 39 0.19
tr|B7G5H1|B7G5H1_PHATR Predicted protein OS=Phaeodactylum tricor... 36 0.94
tr|A2Q6F7|A2Q6F7_MEDTR Single-stranded nucleic acid binding R3H ... 36 0.94
tr|Q5BDQ5|Q5BDQ5_EMENI Putative uncharacterized protein OS=Emeri... 36 0.94
tr|Q4KIP0|Q4KIP0_PSEF5 Aromatic amino acid permease OS=Pseudomon... 35 1.6
tr|B8M0T5|B8M0T5_9EURO snoRNP assembly factor Naf1, putative OS=... 35 2.1
tr|B8PIS5|B8PIS5_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.7
tr|Q5FQ37|Q5FQ37_GLUOX Putative uncharacterized protein OS=Gluco... 35 2.7
tr|Q3EB95|Q3EB95_ARATH Uncharacterized protein At3g10770.2 OS=Ar... 33 6.1
tr|Q0IFD1|Q0IFD1_AEDAE Putative uncharacterized protein OS=Aedes... 33 6.1
tr|A9S6W9|A9S6W9_PHYPA Predicted protein OS=Physcomitrella paten... 33 8.0
tr|A8WU71|A8WU71_CAEBR CBR-HLH-14 protein OS=Caenorhabditis brig... 33 8.0
tr|A0BHE5|A0BHE5_PARTE Chromosome undetermined scaffold_108, who... 33 8.0

>tr|B8LPB7|B8LPB7_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 187

Score = 52.8 bits (125), Expect = 1e-05
Identities = 42/137 (30%), Positives = 53/137 (38%), Gaps = 15/137 (10%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDPSASAIFP--ALQRMYFP-INVYDKYPHLDGPWAPQLQ 328
RE D KDPDYDRSY RY Q DP ++Q MY P +N ++P L P Q+
Sbjct: 34 REIDRKDPDYDRSYDRYSQRFDPGFGFNMGPYSMQAMYAPAVNYNTEFPQLGAPHRVQMP 93

Query: 327 VEQSTYMPTLPFRGPRVESC------YPDVSYAHYGQNHSDA------YWQCQRFPAQAH 184
+E RGP V S + D + NH A Y +F
Sbjct: 94 MEPPPRTIPQHVRGPWVASTSTMGYGHLDTMMGPFNPNHMGAPSASAMYMHSSQFACPGP 153

Query: 183 TGHYTHLKDGFPYSFQH 133
T Y + S H
Sbjct: 154 TMTYVRPHERIQQSLSH 170


>tr|A7QLJ1|A7QLJ1_VITVI Chromosome undetermined scaffold_119, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00001638001 PE=4 SV=1
Length = 460

Score = 50.4 bits (119), Expect = 5e-05
Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 19/150 (12%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYPHLDGPWAPQLQ 328
RE D KDPDYDRSY RY Q DP + +Q MY P +N ++P L PQ+
Sbjct: 306 REIDRKDPDYDRSYDRYLQRFDPGFGFNGGPYTIQPMYTPAVNYNTEFPQLGSAHRPQIS 365

Query: 327 VEQSTYMPTLPFRGPRVESCYP-DVSYAH-------YGQNH------SDAYWQCQRFPAQ 190
E GP P + Y H + NH S Y ++P Q
Sbjct: 366 TEHQPRPLPQHLSGPWPAPSTPTGIGYGHPETMMSPFNPNHVGARSTSTLYLPSSQYPCQ 425

Query: 189 AHTGHYTHLKDGF--PYSFQHGLQSTMSLG 106
+ H + P+S H Q S G
Sbjct: 426 RPGMPFIHPHEHVHQPFSQSHQQQPDTSFG 455


>tr|A5AV15|A5AV15_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041705 PE=4 SV=1
Length = 408

Score = 50.4 bits (119), Expect = 5e-05
Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 19/150 (12%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYPHLDGPWAPQLQ 328
RE D KDPDYDRSY RY Q DP + +Q MY P +N ++P L PQ+
Sbjct: 219 REIDRKDPDYDRSYDRYLQRFDPGFGFNGGPYTIQPMYTPAVNYNTEFPQLGSAHRPQIS 278

Query: 327 VEQSTYMPTLPFRGPRVESCYP-DVSYAH-------YGQNH------SDAYWQCQRFPAQ 190
E GP P + Y H + NH S Y ++P Q
Sbjct: 279 TEHQPRPLPQHLSGPWPAPSTPTGIGYGHPETMMSPFNPNHVGARSTSTLYLPSSQYPCQ 338

Query: 189 AHTGHYTHLKDGF--PYSFQHGLQSTMSLG 106
+ H + P+S H Q S G
Sbjct: 339 RPGMPFIHPHEHVHQPFSQSHQQQPDTSFG 368


>tr|A9NUZ4|A9NUZ4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 376

Score = 48.9 bits (115), Expect = 1e-04
Identities = 43/137 (31%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDPSASAIFPA--LQRMYFP-INVYDKYPHLDGPWAPQLQ 328
RE D KDPDYDRSY RY Q DP +Q +Y P +N ++P L P Q+
Sbjct: 222 REKDRKDPDYDRSYDRYNQRFDPGFGLNLGPFNMQALYTPLVNYNTEFPQLGTPHRAQIH 281

Query: 327 VEQSTYMPTLPFRGPRVESCY------------PDVSY-----AHYGQNHSDA-YWQCQR 202
+E P P P V + PD H G + S A Y Q +
Sbjct: 282 ME-----PPPPPVPPHVHGTWGLAPPNTMGYGPPDAMVRPFHPGHMGAHSSPAMYLQSSQ 336

Query: 201 FPAQAHTGHYTHLKDGF 151
F Y HL + F
Sbjct: 337 FACPGPAMSYIHLHEQF 353


>tr|Q652Q6|Q652Q6_ORYSJ cDNA clone:J013160I10, full insert sequence
OS=Oryza sativa subsp. japonica GN=OJ1003_C09.7-1 PE=2
SV=1
Length = 455

Score = 43.9 bits (102), Expect = 0.005
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 23/88 (26%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYP----------- 361
RE D KDPDYDRSY RY Q DP + +Q +Y P +N ++P
Sbjct: 300 RESDRKDPDYDRSYDRYMQRFDPGFGFNGGSYTIQPLYAPAVNYNTEFPQLGSHGSPVPV 359

Query: 360 ---------HLDGPWAPQLQVEQSTYMP 304
H+ GPW+P Y P
Sbjct: 360 EQQPQSIAQHIPGPWSPAQSPNAIGYRP 387


>tr|A3C1N0|A3C1N0_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_029202 PE=4 SV=1
Length = 376

Score = 43.9 bits (102), Expect = 0.005
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 23/88 (26%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYP----------- 361
RE D KDPDYDRSY RY Q DP + +Q +Y P +N ++P
Sbjct: 221 RESDRKDPDYDRSYDRYMQRFDPGFGFNGGSYTIQPLYAPAVNYNTEFPQLGSHGSPVPV 280

Query: 360 ---------HLDGPWAPQLQVEQSTYMP 304
H+ GPW+P Y P
Sbjct: 281 EQQPQSIAQHIPGPWSPAQSPNAIGYRP 308


>tr|A2Z474|A2Z474_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_32444 PE=4 SV=1
Length = 441

Score = 43.9 bits (102), Expect = 0.005
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 23/88 (26%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYP----------- 361
RE D KDPDYDRSY RY Q DP + +Q +Y P +N ++P
Sbjct: 286 RESDRKDPDYDRSYDRYMQRFDPGFGFNGGSYTIQPLYAPAVNYNTEFPQLGSHGSPVPV 345

Query: 360 ---------HLDGPWAPQLQVEQSTYMP 304
H+ GPW+P Y P
Sbjct: 346 EQQPQSIAQHIPGPWSPAQSPNAIGYRP 373


>tr|A9SL97|A9SL97_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165532 PE=4 SV=1
Length = 659

Score = 39.7 bits (91), Expect = 0.085
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDPSASAIFPAL--QRMYFP-INVYDKYPHLDGPWAPQLQ 328
RE D +DPDYDRS RY Q DP Q +Y P +N ++P L P QL
Sbjct: 508 REKDRRDPDYDRSTARYAQRFDPGFGVSMGPYGGQALYAPVVNYNTEFPQLGVPPRGQLH 567

Query: 327 VE 322
++
Sbjct: 568 MD 569


>tr|B4L3F5|B4L3F5_DROMO GI15536 OS=Drosophila mojavensis GN=GI15536
PE=4 SV=1
Length = 753

Score = 39.3 bits (90), Expect = 0.11
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = -1

Query: 363 PHLDGPWAPQLQVEQSTYMPTLPFRGPRVESCYPDVSYAHYG-----QNHSDAYWQCQRF 199
PH+ APQ Q +Q P P P + P + YA+YG Q+ Y+Q Q
Sbjct: 518 PHMPPHMAPQQQQQQPPQQPP-PGGMPGLPPPLPHMGYANYGGPGPGQHSHTHYYQPQYG 576

Query: 198 PAQAHTGHYTHLKDGFPYSFQH 133
P +YTHL PYS H
Sbjct: 577 PHSRPQPYYTHLPPYQPYSPLH 598


>tr|A9SVC8|A9SVC8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_84479 PE=4 SV=1
Length = 465

Score = 38.9 bits (89), Expect = 0.15
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -1

Query: 498 RE*DMKDPDYDRSYKRYPQLLDPSASAIFPAL--QRMYFP-INVYDKYPHLDGPWAPQLQ 328
RE D +DPDYDR+ RY Q DP Q +Y P +N ++P L P Q+
Sbjct: 343 REKDRRDPDYDRNTARYSQRFDPGFGVSLGPYGGQALYAPVVNYNTEFPQLGVPPRGQMH 402

Query: 327 VE 322
+E
Sbjct: 403 ME 404