BP917522
Clone id YMU001_000101_H05
Library
Length 196
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCGCCAAGAAGGGCCACGACTTCGCACCAGCGGGTGAGGTACTCAATGATGGCCAAGATA
CATTTATTGCTAGCTGTGGATGTGGGAAATGGACCCATCATATCCCAAACTACCAATTCC
AATGGTTCTTGCGCCTGAATATCAGGGATAAGTGACCGACATTGCATGGTGGTGTTTTAG
TGCTTTGGAAAATTGT
■■Homology search results ■■ -
sp_hit_id Q4R6I1
Definition sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis
Align length 44
Score (bit) 34.3
E-value 0.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917522|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_H05.
(196 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protei... 34 0.20
sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protei... 34 0.20
sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protei... 34 0.26
sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protei... 33 0.34
sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein ... 32 1.3
sp|Q8K259|GIN1_MOUSE Gypsy retrotransposon integrase-like protei... 31 1.7
sp|Q7K4B3|ELP2_DROME Probable elongator complex protein 2 OS=Dro... 30 4.9
sp|Q1ISS7|ENO_ACIBL Enolase OS=Acidobacteria bacterium (strain E... 29 8.4
sp|A3DCX5|FMT_CLOTH Methionyl-tRNA formyltransferase OS=Clostrid... 29 8.5

>sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protein 1
OS=Macaca fascicularis GN=GIN1 PE=2 SV=1
Length = 522

Score = 34.3 bits (77), Expect = 0.20
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3

Query: 140 IQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
++ + P LV D+MGPF TS S+ + + + T+W ++ L
Sbjct: 134 LKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWVVILPL 177


>sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protein 1
OS=Homo sapiens GN=GIN1 PE=2 SV=2
Length = 522

Score = 34.3 bits (77), Expect = 0.20
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3

Query: 140 IQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
++ + P LV D+MGPF TS S+ + + + T+W ++ L
Sbjct: 134 LKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPL 177


>sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protein 1
OS=Pongo abelii GN=GIN1 PE=2 SV=1
Length = 522

Score = 33.9 bits (76), Expect = 0.26
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3

Query: 140 IQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
++ + P LV D+MGPF TS S+ + + + T+W ++ L
Sbjct: 134 LKVENPWSLVTVDLMGPFHTSNRSHVYAVIMTDLFTKWIVILPL 177


>sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protein 1
OS=Bos taurus GN=GIN1 PE=2 SV=1
Length = 499

Score = 33.5 bits (75), Expect = 0.34
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -3

Query: 140 IQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
++ + P +V D+MGPF TS S+ + + + T+W ++ L
Sbjct: 112 LKVENPWSIVTVDLMGPFHTSNRSHVYAIIMTDLFTKWVVILPL 155


>sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein 1
OS=Rattus norvegicus GN=GIN1 PE=2 SV=1
Length = 518

Score = 31.6 bits (70), Expect = 1.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3

Query: 125 PLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
P +V D+MGPF TS+ S+ + + + T+W ++ L
Sbjct: 139 PWSVVTVDLMGPFHTSSRSHVYAMIMTDLFTKWVMILPL 177


>sp|Q8K259|GIN1_MOUSE Gypsy retrotransposon integrase-like protein 1
OS=Mus musculus GN=Gin1 PE=2 SV=2
Length = 518

Score = 31.2 bits (69), Expect = 1.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3

Query: 125 PLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
P +V D+MGPF TS S+ + + + T+W ++ L
Sbjct: 139 PWSVVTVDLMGPFHTSNRSHVYAIIMTDLFTKWVMILPL 177


>sp|Q7K4B3|ELP2_DROME Probable elongator complex protein 2
OS=Drosophila melanogaster GN=StIP PE=1 SV=1
Length = 794

Score = 29.6 bits (65), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2

Query: 80 MWEMDPSYPKLPIPMVLAPEYQG*VTDIAW 169
+W DP P+L P V+ + G V D+AW
Sbjct: 365 IWSQDPDRPQLWTPGVIVGGHYGEVRDLAW 394


>sp|Q1ISS7|ENO_ACIBL Enolase OS=Acidobacteria bacterium (strain
Ellin345) GN=eno PE=3 SV=1
Length = 433

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2

Query: 186 KALKHHHAMSVTYP*YSGARTIGIGSLGYDGSIS 85
+ K++ + + +GAR +GIG+L YDG +S
Sbjct: 398 RVAKYNQLLRIEEQLGAGARFLGIGALNYDGDLS 431


>sp|A3DCX5|FMT_CLOTH Methionyl-tRNA formyltransferase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=fmt PE=3
SV=1
Length = 311

Score = 28.9 bits (63), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3

Query: 6 KKGHDFAPAGEVLNDGQDTFIASCGCGKWTHHIPNYQFQWFLRLNIRD 149
++ H+F P G +L G+D + +CG GK I QF R+ + +
Sbjct: 252 EENHNFTP-GTILKVGKDGLVVACGVGKVV--IKEVQFDSSRRMTVEE 296


tr_hit_id Q4QQD3
Definition tr|Q4QQD3|Q4QQD3_SCHMA Gag-pol polyprotein OS=Schistosoma mansoni
Align length 64
Score (bit) 42.7
E-value 0.009
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917522|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_H05.
(196 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4QQD3|Q4QQD3_SCHMA Gag-pol polyprotein OS=Schistosoma manson... 43 0.009
tr|Q6GNM4|Q6GNM4_XENLA MGC80999 protein OS=Xenopus laevis GN=MGC... 42 0.012
tr|Q3I6J4|Q3I6J4_SILLA Pol-polyprotein OS=Silene latifolia GN=po... 42 0.012
tr|B5DFQ8|B5DFQ8_XENTR Putative uncharacterized protein OS=Xenop... 42 0.015
tr|B0JYV3|B0JYV3_XENTR LOC100145119 protein OS=Xenopus tropicali... 42 0.015
tr|Q6IFU0|Q6IFU0_SCHMA Pol polyprotein OS=Schistosoma mansoni PE... 42 0.020
tr|Q9LJS9|Q9LJS9_ARATH Retroelement pol polyprotein-like OS=Arab... 40 0.045
tr|Q9ZNW4|Q9ZNW4_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1 40 0.058
tr|A5BVD9|A5BVD9_VITVI Putative uncharacterized protein OS=Vitis... 39 0.099
tr|Q9SJS0|Q9SJS0_ARATH Putative retroelement pol polyprotein OS=... 39 0.17
tr|Q8H8L9|Q8H8L9_ORYSJ Putative polyprotein (Retrotransposon pro... 38 0.22
tr|B4LA45|B4LA45_DROMO GI11945 OS=Drosophila mojavensis GN=GI119... 38 0.29
tr|Q9LPB1|Q9LPB1_ARATH T32E20.9 OS=Arabidopsis thaliana PE=4 SV=1 37 0.38
tr|A5C896|A5C896_VITVI Putative uncharacterized protein OS=Vitis... 37 0.38
tr|Q9SHM5|Q9SHM5_ARATH F7F22.15 OS=Arabidopsis thaliana PE=4 SV=1 37 0.49
tr|Q9SHM3|Q9SHM3_ARATH F7F22.17 OS=Arabidopsis thaliana PE=4 SV=1 37 0.49
tr|Q9MAR5|Q9MAR5_ARATH F28H19.8 protein OS=Arabidopsis thaliana ... 37 0.49
tr|Q9FZN9|Q9FZN9_ARATH Retroelement pol polyprotein-like OS=Arab... 37 0.49
tr|A5C899|A5C899_VITVI Putative uncharacterized protein OS=Vitis... 37 0.49
tr|Q1KTA8|Q1KTA8_9MICR Pol polyprotein OS=Nosema bombycis PE=4 SV=1 37 0.49
tr|Q0J8A6|Q0J8A6_ORYSJ Os08g0125300 protein OS=Oryza sativa subs... 36 0.84
tr|B8BDZ6|B8BDZ6_ORYSI Putative uncharacterized protein OS=Oryza... 36 0.84
tr|A5CAC7|A5CAC7_VITVI Putative uncharacterized protein OS=Vitis... 36 0.84
tr|Q6GV81|Q6GV81_OIKDI Pol protein OS=Oikopleura dioica GN=pol P... 36 0.84
tr|Q2AA50|Q2AA50_ASPOF Retrotransposon gag protein OS=Asparagus ... 36 1.1
tr|Q2A9Z6|Q2A9Z6_ASPOF Integrase core domain containing protein ... 36 1.1
tr|B5DU05|B5DU05_DROPS GA22199 OS=Drosophila pseudoobscura pseud... 35 1.4
tr|A4QP13|A4QP13_DANRE Zgc:162621 protein OS=Danio rerio GN=zgc:... 35 1.9
tr|A5C2K0|A5C2K0_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9
tr|A5ASW0|A5ASW0_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9

>tr|Q4QQD3|Q4QQD3_SCHMA Gag-pol polyprotein OS=Schistosoma mansoni
PE=2 SV=1
Length = 1154

Score = 42.7 bits (99), Expect = 0.009
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Frame = -3

Query: 173 TTMQCRSLIPDIQAQEPLELV-------VW--DMMGPFPTSTASNKCILAIIEYLTRWCE 21
T QC+ + D Q PL+ V +W D+MGPFP + + N+ +L + E+ TRW +
Sbjct: 955 TCQQCQLMKSDRYMQPPLQSVPVTAVGDLWSVDVMGPFPQTDSGNRYLLVMTEHATRWVD 1014

Query: 20 VVAL 9
V +
Sbjct: 1015 AVPI 1018


>tr|Q6GNM4|Q6GNM4_XENLA MGC80999 protein OS=Xenopus laevis
GN=MGC80999 PE=2 SV=1
Length = 414

Score = 42.4 bits (98), Expect = 0.012
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3

Query: 194 NFPKH*NTTMQCRSLIPDIQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVV 15
N H NT +C+ ++ P E++ GPFP S+ N +L + ++ T+W E V
Sbjct: 126 NAEHHKNTPRKCKP----VKVDHPWEVLSIAFHGPFPPSSQQNTYVLTVTDFFTKWIEAV 181

Query: 14 AL 9
AL
Sbjct: 182 AL 183


>tr|Q3I6J4|Q3I6J4_SILLA Pol-polyprotein OS=Silene latifolia GN=pol
PE=4 SV=1
Length = 1307

Score = 42.4 bits (98), Expect = 0.012
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -3

Query: 125 PLELVVW--DMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
PL W D++GPFPT++ K ++ ++Y T+W E VA+
Sbjct: 1021 PLPFAQWGMDLLGPFPTASGGRKYLIVAVDYFTKWVEAVAV 1061


>tr|B5DFQ8|B5DFQ8_XENTR Putative uncharacterized protein OS=Xenopus
tropicalis PE=2 SV=1
Length = 413

Score = 42.0 bits (97), Expect = 0.015
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3

Query: 194 NFPKH*NTTMQCRSLIPDIQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVV 15
N H NT +C+ ++ P E++ GPFP S+ N +L + ++ T+W E V
Sbjct: 126 NAEHHKNTPRKCKP----VKVDRPWEVLSIVFHGPFPPSSQKNTYVLTVTDFFTKWMEAV 181

Query: 14 AL 9
AL
Sbjct: 182 AL 183


>tr|B0JYV3|B0JYV3_XENTR LOC100145119 protein OS=Xenopus tropicalis
GN=LOC100145119 PE=2 SV=1
Length = 376

Score = 42.0 bits (97), Expect = 0.015
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3

Query: 194 NFPKH*NTTMQCRSLIPDIQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVV 15
N H NT +C+ ++ P E++ GPFP S+ N +L + ++ T+W E V
Sbjct: 126 NAEHHKNTPRKCKP----VKVDRPWEVLSIVFHGPFPPSSQKNTYVLTVTDFFTKWTEAV 181

Query: 14 AL 9
AL
Sbjct: 182 AL 183


>tr|Q6IFU0|Q6IFU0_SCHMA Pol polyprotein OS=Schistosoma mansoni PE=2
SV=1
Length = 1382

Score = 41.6 bits (96), Expect = 0.020
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -3

Query: 125 PLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
P + V D+MGP T+ N+ IL +++Y T+WCE V L
Sbjct: 1054 PHQRVGIDIMGPLTTTKKGNRYILVMVDYFTKWCEAVPL 1092


>tr|Q9LJS9|Q9LJS9_ARATH Retroelement pol polyprotein-like
OS=Arabidopsis thaliana PE=4 SV=1
Length = 1118

Score = 40.4 bits (93), Expect = 0.045
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = -3

Query: 158 RSLIPDIQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVA 12
R IP+ + +E ++ D MGPFP S+ N+ IL ++Y+++W E +A
Sbjct: 807 RRCIPESEVEEVFDVWGIDFMGPFP-SSYGNEYILVAVDYVSKWVEAIA 854


>tr|Q9ZNW4|Q9ZNW4_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1
Length = 1877

Score = 40.0 bits (92), Expect = 0.058
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3

Query: 140 IQAQEPLELVVWDMMGPFPTSTASNKCILAIIEYLTRWCEVVAL 9
I A PL+ D++GP PT+ NK + IEY TRW E L
Sbjct: 1593 IPASWPLQRWGMDLVGPMPTAQGGNKFAVVAIEYFTRWIEAKPL 1636


>tr|A5BVD9|A5BVD9_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041301 PE=4 SV=1
Length = 1451

Score = 39.3 bits (90), Expect = 0.099
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 16/69 (23%)
Frame = -3

Query: 173 TTMQCRSLIP----------DIQAQEPLELV----VW--DMMGPFPTSTASNKCILAIIE 42
TTM+CRS + +P+ +V VW D MGPFPTS N CIL I+
Sbjct: 1206 TTMKCRSYDRCQRLGKLTRRNQMPMKPILIVDLFDVWGIDFMGPFPTSFG-NSCILVGID 1264

Query: 41 YLTRWCEVV 15
Y+++W E +
Sbjct: 1265 YVSKWVEAI 1273


>tr|Q9SJS0|Q9SJS0_ARATH Putative retroelement pol polyprotein
OS=Arabidopsis thaliana GN=At2g06320 PE=2 SV=1
Length = 466

Score = 38.5 bits (88), Expect = 0.17
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = -3

Query: 110 VW--DMMGPFPTSTASNKCILAIIEYLTRWCEVVA 12
VW D MGPFP+S NK IL +++Y+++W E +A
Sbjct: 170 VWGIDFMGPFPSSYG-NKYILVVVDYVSKWVEAIA 203