BP917528
Clone id YMU001_000102_A03
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTCCCCTTCTGGCTAGAGGCATTCATGCCTTAGCTCTGCTTTTGATTCTCTAGCACCGGA
GTTGGAGGCTCTCCCTCTCTGGAATATCTACCATGAACTCCGGATCAAACCTTAGAAAGT
ACCTTTTGAGCCTCCATCCATTGACTAGTCTTGTGGATTTGACCATCTACTTCCATCAAT
TTGCAGTTGCCACTGGCGTATCGCTTTTTGATGATGAATGGCCCTTCCCATTTGGGTTGA
AGCTTCTTATCTTTCCTAGTGTCGAATCTATTATCGTATCTCAATACAAACATGCCTTTC
TTCAGACCCTTTTCCTTAAGCCCTTGATTGAATGTGAGTCGTCATCATTCTGCTTGCGTT
GCATATAAGTTGATCGCATCTTCCCTATCTAGGCTGAAGCATTTCTAGATCTAAGGTGTG
■■Homology search results ■■ -
sp_hit_id Q96T58
Definition sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens
Align length 94
Score (bit) 37.4
E-value 0.024
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917528|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_A03.
(420 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN... 37 0.024
sp|P43615|YFL3_YEAST Uncharacterized protein YFR043C OS=Saccharo... 31 2.2
sp|Q98QK2|Y359_MYCPU UPF0230 protein MYPU_3590 OS=Mycoplasma pul... 29 8.4
sp|Q5GA86|VGLG_TAVCV Glycoprotein G OS=Taro vein chlorosis virus... 29 8.4
sp|Q9I534|DPO4_PSEAE DNA polymerase IV OS=Pseudomonas aeruginosa... 29 8.4
sp|Q02I83|DPO4_PSEAB DNA polymerase IV OS=Pseudomonas aeruginosa... 29 8.4
sp|A6VA50|DPO4_PSEA7 DNA polymerase IV OS=Pseudomonas aeruginosa... 29 8.4
sp|Q8BSU2|CXL16_MOUSE C-X-C motif chemokine 16 OS=Mus musculus G... 29 8.6

>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN
PE=1 SV=1
Length = 3664

Score = 37.4 bits (85), Expect = 0.024
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Frame = -2

Query: 317 KEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFII--------KKRYASGNCKLMEVDG 162
KEKGL + V+ + R RK K + +G + K+R+A N K +
Sbjct: 941 KEKGLSSHVEVVEKEGRLKARKHLKPEQPADGVSAVDLEKLEARKRRFADSNLKAEKQKP 1000

Query: 161 QIHKTSQWMEAQKVLSKV*SGVHGR---YSREGE 69
++ K+S ME +VLSK V R REGE
Sbjct: 1001 EVKKSSPEMEDARVLSKKQPDVSSREVILLREGE 1034


>sp|P43615|YFL3_YEAST Uncharacterized protein YFR043C
OS=Saccharomyces cerevisiae GN=YFR043C PE=1 SV=1
Length = 237

Score = 30.8 bits (68), Expect = 2.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3

Query: 243 LLIFPSVESIIVSQYKHAFLQTLFLKPLIECESSSFCL 356
+L +P + +++S + H FL+T FL+ L C S+ +
Sbjct: 2 VLQYPQNKILVLSDHPHNFLKTQFLQDLFHCSSTGISI 39


>sp|Q98QK2|Y359_MYCPU UPF0230 protein MYPU_3590 OS=Mycoplasma
pulmonis GN=MYPU_3590 PE=3 SV=1
Length = 288

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -2

Query: 167 DGQIHKTSQWMEAQKVLSKV*SGVHGRYSREGEPPTPVLENQKQS 33
+G++ K + + QK L+K+ S + G+YS++ + PV+ + + S
Sbjct: 190 NGELLKEGKGISFQKTLTKLISSLSGKYSKDSKNYFPVILHAQNS 234


>sp|Q5GA86|VGLG_TAVCV Glycoprotein G OS=Taro vein chlorosis virus
GN=G PE=3 SV=1
Length = 588

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2

Query: 230 WEGPFIIKKRYASGNCKLMEVDGQIHKTSQWMEAQKVLS 114
W+G +II Y +M G IH++S+W + LS
Sbjct: 437 WKGAYIIDYPYNGSGRWIMNPGGFIHRSSKWFPSLTELS 475


>sp|Q9I534|DPO4_PSEAE DNA polymerase IV OS=Pseudomonas aeruginosa
GN=dinB PE=3 SV=1
Length = 349

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2

Query: 77 LWNIYHELRIKP*KVPFEPPSID*SCGFDHLLPSICSC 190
LW + H + +P +V S+ C FD LP + +C
Sbjct: 222 LWGLAHGIDERPVEVDSRRQSVSVECTFDRDLPDLAAC 259


>sp|Q02I83|DPO4_PSEAB DNA polymerase IV OS=Pseudomonas aeruginosa
(strain UCBPP-PA14) GN=dinB PE=3 SV=1
Length = 349

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2

Query: 77 LWNIYHELRIKP*KVPFEPPSID*SCGFDHLLPSICSC 190
LW + H + +P +V S+ C FD LP + +C
Sbjct: 222 LWGLAHGIDERPVEVDSRRQSVSVECTFDRDLPDLAAC 259


>sp|A6VA50|DPO4_PSEA7 DNA polymerase IV OS=Pseudomonas aeruginosa
(strain PA7) GN=dinB PE=3 SV=1
Length = 349

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2

Query: 77 LWNIYHELRIKP*KVPFEPPSID*SCGFDHLLPSICSC 190
LW++ H + +P +V S+ C FD LP + +C
Sbjct: 222 LWSLAHGVDERPVEVDSRRQSVSVECTFDRDLPDLAAC 259


>sp|Q8BSU2|CXL16_MOUSE C-X-C motif chemokine 16 OS=Mus musculus
GN=Cxcl16 PE=1 SV=2
Length = 246

Score = 28.9 bits (63), Expect = 8.6
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1

Query: 255 ER*EASTQMGRAIHHQKAIRQWQLQIDGSRWSNPQD*SMDGGSKGT 118
ER E T G++ HHQK + Q Q + P D S S+ T
Sbjct: 95 ERKECGTGHGKSFHHQKHLPQASTQTPEAAEGTPSDTSTPAHSQST 140


tr_hit_id A5C0Q4
Definition tr|A5C0Q4|A5C0Q4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 57
Score (bit) 40.0
E-value 0.0007
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917528|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_A03.
(420 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5C0Q4|A5C0Q4_VITVI Putative uncharacterized protein OS=Vitis... 40 7e-04
tr|Q2QZU9|Q2QZU9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 45 0.001
tr|Q7X805|Q7X805_ORYSJ OSJNBb0103I08.2 protein (OSJNBa0011L07.17... 45 0.002
tr|Q01IP3|Q01IP3_ORYSA H0115B09.9 protein OS=Oryza sativa GN=H01... 45 0.002
tr|A5AQL6|A5AQL6_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002
tr|A5B797|A5B797_VITVI Putative uncharacterized protein OS=Vitis... 40 0.002
tr|A5BNJ4|A5BNJ4_VITVI Putative uncharacterized protein OS=Vitis... 40 0.003
tr|A5C130|A5C130_VITVI Putative uncharacterized protein OS=Vitis... 38 0.003
tr|A5C0A7|A5C0A7_VITVI Putative uncharacterized protein OS=Vitis... 44 0.003
tr|A5AM78|A5AM78_VITVI Putative uncharacterized protein OS=Vitis... 40 0.003
tr|A5B3E0|A5B3E0_VITVI Putative uncharacterized protein OS=Vitis... 40 0.003
tr|A5AQW6|A5AQW6_VITVI Putative uncharacterized protein OS=Vitis... 40 0.003
tr|A5BGF4|A5BGF4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004
tr|A5AVP3|A5AVP3_VITVI Putative uncharacterized protein OS=Vitis... 39 0.004
tr|A5BW22|A5BW22_VITVI Putative uncharacterized protein OS=Vitis... 39 0.004
tr|Q2A9Z7|Q2A9Z7_ASPOF Putative polyprotein, related OS=Asparagu... 43 0.007
tr|A5AIX4|A5AIX4_VITVI Putative uncharacterized protein OS=Vitis... 39 0.007
tr|Q8W0Y2|Q8W0Y2_MAIZE Putative gag-pol OS=Zea mays GN=Z178A11.4... 43 0.009
tr|Q8S462|Q8S462_MAIZE Putative gag-pol-orf2 OS=Zea mays GN=Z092... 43 0.009
tr|Q2AA19|Q2AA19_ASPOF RNase H family protein OS=Asparagus offic... 43 0.009
tr|A5BQ11|A5BQ11_VITVI Putative uncharacterized protein OS=Vitis... 43 0.009
tr|A5B7L7|A5B7L7_VITVI Putative uncharacterized protein OS=Vitis... 43 0.009
tr|A5B232|A5B232_VITVI Putative uncharacterized protein OS=Vitis... 43 0.009
tr|Q45W58|Q45W58_PHACH Polyprotein (Fragment) OS=Phanerochaete c... 43 0.009
tr|A5AD65|A5AD65_VITVI Putative uncharacterized protein OS=Vitis... 38 0.009
tr|A5AT17|A5AT17_VITVI Putative uncharacterized protein OS=Vitis... 38 0.009
tr|A5AZD2|A5AZD2_VITVI Putative uncharacterized protein OS=Vitis... 38 0.009
tr|A5B9Q6|A5B9Q6_VITVI Putative uncharacterized protein OS=Vitis... 38 0.012
tr|A5C652|A5C652_VITVI Putative uncharacterized protein OS=Vitis... 38 0.012
tr|A5BC35|A5BC35_VITVI Putative uncharacterized protein OS=Vitis... 42 0.012

>tr|A5C0Q4|A5C0Q4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_022317 PE=4 SV=1
Length = 1240

Score = 40.0 bits (92), Expect(2) = 7e-04
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = -2

Query: 329 NQGLKEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFIIKKRYASGNCKLMEVDGQ 159
+Q + K +KG VL YD+R K L+ +W GPFII + YA+G +L+ +G+
Sbjct: 1148 DQLISNKEFQKGQKVLLYDSRLHIFPGK-LKSRWIGPFIIHQVYANGVVELLNSNGK 1203



Score = 25.8 bits (55), Expect(2) = 7e-04
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3

Query: 160 KSTRLVNGWRLKRYFLRFDPEFMVDI-PERESLQL 59
K T VNG+RLK + F FM PE+E + L
Sbjct: 1203 KDTFRVNGYRLKPFMEPFMEPFMEPFKPEKEEINL 1237


>tr|Q2QZU9|Q2QZU9_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g44770 PE=4 SV=1
Length = 1980

Score = 45.4 bits (106), Expect = 0.001
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -2

Query: 386 REDAINLYATQAE**RLTFNQGLKEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFIIK 207
R +A+ A+ E + +NQ +K + +++G VL+ + KL+ KWEGPFI+K
Sbjct: 1891 RVEALEKMASYTEGTKSYYNQKVKTRPIEEGDLVLK--KVLNEVAVGKLESKWEGPFIVK 1948

Query: 206 KRYASGNCKLMEVDGQ 159
K+ +G KL +DG+
Sbjct: 1949 KKTETGAFKLAYLDGE 1964


>tr|Q7X805|Q7X805_ORYSJ OSJNBb0103I08.2 protein (OSJNBa0011L07.17
protein) OS=Oryza sativa subsp. japonica
GN=OSJNBb0103I08.2 PE=4 SV=1
Length = 943

Score = 44.7 bits (104), Expect = 0.002
Identities = 24/76 (31%), Positives = 44/76 (57%)
Frame = -2

Query: 386 REDAINLYATQAE**RLTFNQGLKEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFIIK 207
R +A+ A E + +N+ +K + +++G VL+ + +KL+ KWEGPFI+K
Sbjct: 854 RVEALEKMAQSTEGTKSYYNKKVKIRQIEEGDLVLK--KTLNEVAVEKLESKWEGPFIVK 911

Query: 206 KRYASGNCKLMEVDGQ 159
++ +G KL +DG+
Sbjct: 912 RKLETGAYKLAHLDGE 927


>tr|Q01IP3|Q01IP3_ORYSA H0115B09.9 protein OS=Oryza sativa
GN=H0115B09.9 PE=4 SV=1
Length = 943

Score = 44.7 bits (104), Expect = 0.002
Identities = 24/76 (31%), Positives = 44/76 (57%)
Frame = -2

Query: 386 REDAINLYATQAE**RLTFNQGLKEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFIIK 207
R +A+ A E + +N+ +K + +++G VL+ + +KL+ KWEGPFI+K
Sbjct: 854 RVEALEKMAQSTEGTKSYYNKKVKIRQIEEGDLVLK--KTLNEVAVEKLESKWEGPFIVK 911

Query: 206 KRYASGNCKLMEVDGQ 159
++ +G KL +DG+
Sbjct: 912 RKLETGAYKLAHLDGE 927


>tr|A5AQL6|A5AQL6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_025109 PE=4 SV=1
Length = 843

Score = 44.7 bits (104), Expect = 0.002
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = -2

Query: 395 SLDREDAINLYATQAE**RLTFNQGLKEKGLKKGMFVLR--YDNRFDTRKDKKLQPKWEG 222
+LDR D + A+ + + Q + LK G VLR ++N TR +K Q WEG
Sbjct: 762 NLDRADEVRETASIW---MVDYQQRALPRNLKSGTLVLRKVFENTVGTRA-RKFQANWEG 817

Query: 221 PFIIKKRYASGNCKLMEVDG 162
P+I+ K SG +L ++DG
Sbjct: 818 PYIVSKTSESGTYRLQKLDG 837


>tr|A5B797|A5B797_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027581 PE=4 SV=1
Length = 1537

Score = 40.0 bits (92), Expect(2) = 0.002
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -2

Query: 329 NQGLKEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFIIKKRYASGNCKLMEVDGQ 159
+Q + K +KG VL YD R K L+ +W GPFII + YA+G +L+ +G+
Sbjct: 1450 DQLISNKEFQKGQRVLLYDTRLHIFPGK-LKSRWIGPFIIHRVYANGVVELLNSNGK 1505



Score = 23.9 bits (50), Expect(2) = 0.002
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3

Query: 160 KSTRLVNGWRLKRYFLRFDPE 98
K T VNG+RLK + F PE
Sbjct: 1505 KDTFKVNGYRLKPFMEPFKPE 1525


>tr|A5BNJ4|A5BNJ4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_014174 PE=4 SV=1
Length = 655

Score = 40.0 bits (92), Expect(2) = 0.003
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -2

Query: 329 NQGLKEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFIIKKRYASGNCKLMEVDGQ 159
+Q + K +KG VL YD R K L+ +W GPFII + YA+G +L+ +G+
Sbjct: 568 DQLISNKEFQKGQRVLLYDTRLHIFPGK-LKSRWIGPFIIHRVYANGVVELLNSNGK 623



Score = 23.9 bits (50), Expect(2) = 0.003
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3

Query: 160 KSTRLVNGWRLKRYFLRFDPE 98
K T VNG+RLK + F PE
Sbjct: 623 KDTFRVNGYRLKPFMEPFKPE 643


>tr|A5C130|A5C130_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_016324 PE=4 SV=1
Length = 560

Score = 38.1 bits (87), Expect(2) = 0.003
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = -2

Query: 329 NQGLKEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFIIKKRYASGNCKLMEVDGQ 159
+Q + K +KG VL YD R K L+ +W GPFII + Y +G +L+ +G+
Sbjct: 447 DQLISNKEFQKGQRVLLYDTRLHIFPGK-LKSRWIGPFIIHQVYVNGVVELLNSNGK 502



Score = 25.8 bits (55), Expect(2) = 0.003
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3

Query: 160 KSTRLVNGWRLKRYFLRFDPEFMVDIP 80
K T VNG+RLK + F PE ++P
Sbjct: 502 KDTFRVNGYRLKPFMEPFKPEKEEEVP 528


>tr|A5C0A7|A5C0A7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027978 PE=4 SV=1
Length = 880

Score = 44.3 bits (103), Expect = 0.003
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -2

Query: 332 FNQGLKEKGLKKGMFVLR--YDNRFDTRKDKKLQPKWEGPFIIKKRYASGNCKLMEVDG 162
+N+ ++ K K GM VLR ++N + K QP WEGP+I+ K SG L ++DG
Sbjct: 817 YNRKVRPKSFKNGMLVLRKVFENTAEVGAGK-FQPNWEGPYIMSKASESGAYHLQKLDG 874


>tr|A5AM78|A5AM78_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_005876 PE=4 SV=1
Length = 2051

Score = 39.7 bits (91), Expect(2) = 0.003
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -2

Query: 329 NQGLKEKGLKKGMFVLRYDNRFDTRKDKKLQPKWEGPFIIKKRYASGNCKLMEVDGQ 159
+Q + K +KG VL YD R K L+ +W GPFII + YA+G +L+ +G+
Sbjct: 1964 DQLISNKEFQKGQRVLLYDTRLHIFPGK-LKSRWIGPFIIHQVYANGVMELLNSNGK 2019



Score = 23.9 bits (50), Expect(2) = 0.003
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3

Query: 160 KSTRLVNGWRLKRYFLRFDPE 98
K T VNG+RLK + F PE
Sbjct: 2019 KDTFRVNGYRLKPFMEPFKPE 2039