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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917529
Clone id YMU001_000102_A04
Library
Length 466
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCTGCCATTTTTGAATTTGTAACGTCAGACTACATAGTGACTACAAAAATGCATGCACC
CTTCCTTGATTTCCTCTTTGTCTGGAAGTTTTAAGGTGCACTTCACTACATTTTCACATT
GGATATCTTAAGCATACAGATTTTACTAACCATATTTTCTGAATATGCTGAAGCAGATAA
ACAGTGGTGCAAAGGCATCCACCGATGCATAGTCATCTTTGTACATGGTATAGCGTAACG
GACCTCAAAGTGATGGTATGGCAGCCGGGGCAGAAGCTCAAATTCTTCTCGTATTCAACT
CCCAAGCCTTTCTTTTTCTTGACACCTCATGTTGCACTGTTAATTTCCATCGCCATTGAG
GATGCCTGCTTCTTTGACCTGAGTTGGCAACCAACACTCCCTCCTCCAAAGAATGTGAGC
AATTTCCAGAAAGTTCTCCTGCTACATGTAAACCTTCTTCATGGAC
■■Homology search results ■■ -
sp_hit_id A4FUB7
Definition sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus
Align length 46
Score (bit) 30.4
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917529|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_A04.
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protei...    30   3.7  
sp|Q95218|DMBT1_RABIT Deleted in malignant brain tumors 1 protei...    30   4.8  

>sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protein 1
           OS=Bos taurus GN=GIN1 PE=2 SV=1
          Length = 499

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 425 GELSGNCSHSLEEGVLVANSGQRSRHPQWRWKLTVQHEVSRKRKAW 288
           G++  N  H L +  ++     + ++P   + L V HEV R+RK W
Sbjct: 312 GQMENNNCHELNKSKIIVKKKPKQQNP---FHLKVGHEVLRQRKNW 354


>sp|Q95218|DMBT1_RABIT Deleted in malignant brain tumors 1 protein
           OS=Oryctolagus cuniculus GN=Dmbt1 PE=1 SV=2
          Length = 1594

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 434 HVAGELSGNCSHSLEEGVLVANSGQRSRHPQWRWKLTVQHEVS 306
           H  G LS NC H  + GV+ +++   +  P   W  TV +E S
Sbjct: 272 HHRGWLSHNCGHQEDAGVICSDAVPTTTPPPDTWPTTVIYESS 314



 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 434 HVAGELSGNCSHSLEEGVLVANSGQRSRHPQWRWKLTVQHE 312
           H  G LS NC H  + GV+ +++   +  P   W  TV +E
Sbjct: 133 HHRGWLSHNCGHQEDAGVICSDAMAMTSPPPDTWPTTVIYE 173



 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 434 HVAGELSGNCSHSLEEGVLVANSGQRSRHPQWRWKLTVQHE 312
           H  G LS NC H  + GV+ +++   +  P   W  TV +E
Sbjct: 531 HHRGWLSHNCGHQEDAGVICSDAMAMTTPPPDTWPTTVIYE 571
tr_hit_id Q06SC0
Definition tr|Q06SC0|Q06SC0_9BIVA NADH-ubiquinone oxidoreductase chain 5 OS=Hiatella arctica
Align length 39
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917529|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_A04.
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q06SC0|Q06SC0_9BIVA NADH-ubiquinone oxidoreductase chain 5 OS...    33   9.3  
tr|Q4WG87|Q4WG87_ASPFU Integral peroxisomal membrane protein OS=...    33   9.3  
tr|B0YCC5|B0YCC5_ASPFC Integral peroxisomal membrane protein OS=...    33   9.3  

>tr|Q06SC0|Q06SC0_9BIVA NADH-ubiquinone oxidoreductase chain 5
           OS=Hiatella arctica GN=ND5 PE=3 SV=1
          Length = 555

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 269 FFSYSTPKPFFFLTPHVA----LLISIAIEDACFFDLSW 373
           FF  ST K FFFL+P VA    L++ + IE+  FF   W
Sbjct: 432 FFFSSTMKMFFFLSPMVAFCLVLILMVFIEEGGFFSEFW 470


>tr|Q4WG87|Q4WG87_ASPFU Integral peroxisomal membrane protein
           OS=Aspergillus fumigatus GN=AFUA_7G04160 PE=4 SV=1
          Length = 675

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +2

Query: 269 FFSYSTP---KPFFFLTPHVALLISIAIEDACFFDLSWQ--PTLPPP 394
           FFS+S+P    PFFF    VAL   + ++DAC   + WQ  P   PP
Sbjct: 45  FFSFSSPFSLLPFFFA---VALPAMLLMDDACDLSVGWQHLPDSQPP 88


>tr|B0YCC5|B0YCC5_ASPFC Integral peroxisomal membrane protein
           OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 /
           FGSC A1163) GN=AFUB_089700 PE=4 SV=1
          Length = 675

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +2

Query: 269 FFSYSTP---KPFFFLTPHVALLISIAIEDACFFDLSWQ--PTLPPP 394
           FFS+S+P    PFFF    VAL   + ++DAC   + WQ  P   PP
Sbjct: 45  FFSFSSPFSLLPFFFA---VALPAMLLMDDACDLSVGWQHLPDSQPP 88