BP917534 |
Clone id |
YMU001_000102_A10 |
Library |
YMU01 |
Length |
373 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000102_A10. |
Accession |
BP917534 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATATCAATGGGACTCTCAAGTTTTCATCATCTTTGTCCGCTCTGAATGGCAGAGAAACCT CGTCAGCTGTCGTCCCTGCATTATAGACTATCACAAAACTTGGTTCTACAAGAAGAGAGG CTGTATTTAGTAGCCAGATGCAAAATCTCATCCTCCAGCTTCTTCCTCTCCTCCAGGTCC GAGCAGGAGAGCACCTTATCTTCAAGTTCTCTCACCCTCTCCTTCGCTGCAAGTGTGTGA ATGACTCCTGCCAGCGTGATCTGCTCACCTGTCAACCTAACTACATGATGCATGTGTTGA TCTTTCTCAAGATGGTGATTGCTACAGGCAGTTATGCGTATCTCACAATCGAAGTCCACT TCTTGACCTTCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q66JQ7 |
Definition |
sp|Q66JQ7|CASC5_MOUSE Protein CASC5 OS=Mus musculus |
Align length |
69 |
Score (bit) |
33.5 |
E-value |
0.34 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9C843 |
Definition |
tr|Q9C843|Q9C843_ARATH Putative uncharacterized protein F8D11.10 OS=Arabidopsis thaliana |
Align length |
43 |
Score (bit) |
37.0 |
E-value |
0.49 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917534|Adiantum capillus-veneris mRNA, clone: YMU001_000102_A10. (373 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9C843|Q9C843_ARATH Putative uncharacterized protein F8D11.10... 37 0.49 tr|Q54DV3|Q54DV3_DICDI Putative uncharacterized protein OS=Dicty... 36 1.1 tr|Q5BCW5|Q5BCW5_EMENI Putative uncharacterized protein OS=Emeri... 36 1.1 tr|B6EM25|B6EM25_ALISL Membrane associated GGDEF protein OS=Alii... 35 1.9 tr|A3KGI4|A3KGI4_MOUSE Cancer susceptibility candidate 5 OS=Mus ... 33 5.4 tr|A3KGI3|A3KGI3_MOUSE Cancer susceptibility candidate 5 OS=Mus ... 33 5.4 tr|Q2K8G6|Q2K8G6_RHIEC Probable sugar ABC transporter, ATP-bindi... 33 7.1 tr|Q4DZQ1|Q4DZQ1_TRYCR Putative uncharacterized protein OS=Trypa... 33 9.2 tr|B4L8G2|B4L8G2_DROMO GI14407 OS=Drosophila mojavensis GN=GI144... 33 9.2
>tr|Q9C843|Q9C843_ARATH Putative uncharacterized protein F8D11.10 OS=Arabidopsis thaliana GN=At1g42700 PE=4 SV=1 Length = 149
Score = 37.0 bits (84), Expect = 0.49 Identities = 17/43 (39%), Positives = 29/43 (67%) Frame = -3
Query: 257 TLAGVIHTLAAKERVRELEDKVLSCSDLEERKKLEDEILHLAT 129 TL+ L+ RVRELEDK++ SDLE++ +E+++++T Sbjct: 79 TLSKEQEVLSLNNRVRELEDKLVKMSDLEDKVDKMNEVIYIST 121
>tr|Q54DV3|Q54DV3_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum GN=DDB_0184163 PE=4 SV=1 Length = 918
Score = 35.8 bits (81), Expect = 1.1 Identities = 20/54 (37%), Positives = 33/54 (61%) Frame = -3
Query: 257 TLAGVIHTLAAKERVRELEDKVLSCSDLEERKKLEDEILHLATKYSLSSCRTKF 96 T + IHTLAA + +++LE+ S+ +E+K +D+I+ L KY L S T + Sbjct: 560 TNSNQIHTLAAFKHIQDLEE-----SERKEKKDNKDKIVELGKKYGLVSKHTSY 608
>tr|Q5BCW5|Q5BCW5_EMENI Putative uncharacterized protein OS=Emericella nidulans GN=AN1615.2 PE=4 SV=1 Length = 636
Score = 35.8 bits (81), Expect = 1.1 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Frame = -3
Query: 365 QEVDFDCEIRITACSNHHLEKDQHMHHVVRLTGEQITLAGVIHTLAAKERVRELEDKVL- 189 +E+ CE S+ + H + R+ +Q T+ G IH L ++ +V + + L Sbjct: 279 EELGARCETLTRDVSDLRDVRHHHEDEIRRMKQQQDTMTGAIHHLTSEVQVEQKRSEQLQ 338
Query: 188 -SCSDLEERKK-LEDEILHLATKYS 120 S SDLE+++ L +++ HL +Y+ Sbjct: 339 SSVSDLEQKRDGLNNQLQHLQGEYN 363
>tr|B6EM25|B6EM25_ALISL Membrane associated GGDEF protein OS=Aliivibrio salmonicida (strain LFI1238) GN=VSAL_I2704 PE=4 SV=1 Length = 629
Score = 35.0 bits (79), Expect = 1.9 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Frame = -3
Query: 275 LTGEQITLAGVIHTLAAKERVRELEDKVLSCSDLEERKKLEDEILHLATKYSLSSC--RT 102 L ++ L+ ++ K + ++++ +LS D+ +RK LE E+ +L+ K SLS C R Sbjct: 428 LNKDEKKLSLLVRIQVVKNKRKDIQYYILSYIDITQRKLLEKELRYLSEKDSLSDCWNRR 487
Query: 101 KF 96 KF Sbjct: 488 KF 489
>tr|A3KGI4|A3KGI4_MOUSE Cancer susceptibility candidate 5 OS=Mus musculus GN=Casc5 PE=4 SV=1 Length = 1612
Score = 33.5 bits (75), Expect = 5.4 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = -3
Query: 371 EGQEVDFDCEIRITACSNHHLEKDQHMHHVVRLTGEQITL---AGVIHTLAAKERVRELE 201 EG E D D T NH D+H H+V L G T+ G + + LE Sbjct: 730 EGNEGDMDITKSCTVKINHRSLLDKHDSHLVSLAGTSKTILHARGQVEMEINRSHTTPLE 789
Query: 200 DKVLSCSDL 174 K++S SD+ Sbjct: 790 CKIISPSDI 798
>tr|A3KGI3|A3KGI3_MOUSE Cancer susceptibility candidate 5 OS=Mus musculus GN=Casc5 PE=4 SV=1 Length = 2119
Score = 33.5 bits (75), Expect = 5.4 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = -3
Query: 371 EGQEVDFDCEIRITACSNHHLEKDQHMHHVVRLTGEQITL---AGVIHTLAAKERVRELE 201 EG E D D T NH D+H H+V L G T+ G + + LE Sbjct: 730 EGNEGDMDITKSCTVKINHRSLLDKHDSHLVSLAGTSKTILHARGQVEMEINRSHTTPLE 789
Query: 200 DKVLSCSDL 174 K++S SD+ Sbjct: 790 CKIISPSDI 798
>tr|Q2K8G6|Q2K8G6_RHIEC Probable sugar ABC transporter, ATP-binding protein OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=RHE_CH02086 PE=3 SV=1 Length = 507
Score = 33.1 bits (74), Expect = 7.1 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -3
Query: 287 HVVRLTGEQITLAGVIHTLAAKERVRE 207 H+ LTGE+IT AG++ +AA E +E Sbjct: 479 HIAELTGERITAAGIVDAIAAAEHKKE 505
>tr|Q4DZQ1|Q4DZQ1_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi GN=Tc00.1047053507711.270 PE=4 SV=1 Length = 212
Score = 32.7 bits (73), Expect = 9.2 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = -3
Query: 311 LEKDQHMHHVVRLTGEQITLAGVIHTLAAKERVRELEDKVLSCSDLEERKKLE 153 LE+ QH V + + + H A RVRELE + S SD E+R++L+ Sbjct: 85 LERSQHQLGVSFVNSQALDDEWRKHNAAVLGRVRELEQLIASTSDSEKREELQ 137
>tr|B4L8G2|B4L8G2_DROMO GI14407 OS=Drosophila mojavensis GN=GI14407 PE=4 SV=1 Length = 1225
Score = 32.7 bits (73), Expect = 9.2 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Frame = -3
Query: 344 EIRITACSNHHLEKDQHMHHVVRLTGEQITLAGVIHTLAAKE---RVRELEDKVLSCSDL 174 ++ +ACS L + HH+ L ++I A V+H L KE R +E + K++ L Sbjct: 379 QLESSACSKFTLTPQESFHHLQELWKKEI--AEVLHDLREKEKELRNKEEQLKLMQKKQL 436
Query: 173 EERKKLED 150 E+ KL++ Sbjct: 437 EKANKLQE 444
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