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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917540
Clone id YMU001_000102_B05
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTTGTTGCAGGGTGGGTGTCTTTACTCACTGCTTGTAAGACTTTTGGTGATAATACATTA
GCGAAGCATTGCTTCAGGCAACTGGCGCAATGGAGTGCCGCTGGCACCGAAGATTCTATC
CTGATCTCAAACAATGAGGATAGTCTTTGCTTCCAAAACAATTCGCAGAACTTGCATGAC
CTTCAGGCATGTAAAATATTAGGAGTGTGTACTGAAAGTGATAAATCCCTTAGAAACATT
GAGCTTGCTAGAGGGGGCGTGAAAACAGAAAGAGTTGTAAATGGGAACACGTATGCTGCA
CCCCTTCTTAGAGCATTTGAATACAAACAAGGTAATATGTATGAGGACTCCTCAGTAGTC
TACAATTGCCTCAACAAAGCAGACTAAGTATGTTGGAGCACAGTGCGATGAATTTTAAGA
TCAGATAGTCCCCTCAGTACATGTCAATAGGTAGATGTAAGATATCCAAATTCTCTCTGC
AAGCAGCAAAAGAAGCTCTTGCTGTGCAAAGAAATTG
■■Homology search results ■■ -
sp_hit_id P97564
Definition sp|P97564|PLSB_RAT Glycerol-3-phosphate acyltransferase, mitochondrial OS=Rattus norvegicus
Align length 33
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917540|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_B05.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97564|PLSB_RAT Glycerol-3-phosphate acyltransferase, mitocho...    32   1.8  
sp|Q61586|PLSB_MOUSE Glycerol-3-phosphate acyltransferase, mitoc...    32   1.8  
sp|Q9HCL2|PLSB_HUMAN Glycerol-3-phosphate acyltransferase, mitoc...    32   1.8  
sp|O13332|AUR1_CANAL Aureobasidin A resistance protein homolog O...    32   1.8  
sp|Q5GJ77|PLSB_BOVIN Glycerol-3-phosphate acyltransferase, mitoc...    31   3.0  
sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protei...    31   4.0  
sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protei...    31   4.0  
sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protei...    30   6.8  
sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protei...    30   6.8  
sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protei...    30   6.8  
sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protei...    30   8.8  
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei...    30   8.8  
sp|P13837|G156_PARPR G surface protein, allelic form 156 OS=Para...    30   8.8  
sp|Q9ZLF3|FEOB_HELPJ Ferrous iron transport protein B OS=Helicob...    30   8.8  

>sp|P97564|PLSB_RAT Glycerol-3-phosphate acyltransferase,
           mitochondrial OS=Rattus norvegicus GN=Gpam PE=1 SV=3
          Length = 828

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 487 AACRENLDILHLPIDMY*GDYLILKFIALCSNI 389
           AA   NL +L LP+     DYL+L FI  C NI
Sbjct: 216 AATETNLPLLFLPVHRSHIDYLLLTFILFCHNI 248


>sp|Q61586|PLSB_MOUSE Glycerol-3-phosphate acyltransferase,
           mitochondrial OS=Mus musculus GN=Gpam PE=1 SV=1
          Length = 827

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 487 AACRENLDILHLPIDMY*GDYLILKFIALCSNI 389
           AA   NL +L LP+     DYL+L FI  C NI
Sbjct: 216 AATETNLPLLFLPVHRSHIDYLLLTFILFCHNI 248


>sp|Q9HCL2|PLSB_HUMAN Glycerol-3-phosphate acyltransferase,
           mitochondrial OS=Homo sapiens GN=GPAM PE=1 SV=3
          Length = 828

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 487 AACRENLDILHLPIDMY*GDYLILKFIALCSNI 389
           AA   NL +L LP+     DYL+L FI  C NI
Sbjct: 216 AATETNLPLLFLPVHRSHIDYLLLTFILFCHNI 248


>sp|O13332|AUR1_CANAL Aureobasidin A resistance protein homolog
           OS=Candida albicans GN=AUR1 PE=3 SV=1
          Length = 471

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -2

Query: 351 GVLIHITLFVFKCSKKGCSIRVPIYNSF--CFHAPSSKLNVSKGFITFSTHS*YFTCLKV 178
           G L+ I  FVF        I++PI  +F  CF  P +          F+  + YFTC K+
Sbjct: 62  GFLVSILFFVFVVFPASFFIKLPIILAFATCFLIPLTSQFFLPALPVFTWLALYFTCAKI 121

Query: 177 MQVLRIVLEAKTI 139
            Q  +  +  K +
Sbjct: 122 PQEWKPAITVKVL 134


>sp|Q5GJ77|PLSB_BOVIN Glycerol-3-phosphate acyltransferase,
           mitochondrial OS=Bos taurus GN=GPAM PE=2 SV=1
          Length = 825

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 487 AACRENLDILHLPIDMY*GDYLILKFIALCSNI 389
           AA   NL ++ LP+     DYL+L FI  C NI
Sbjct: 216 AATETNLPLIFLPVHRSHIDYLLLTFILFCHNI 248


>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein
           At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
          Length = 484

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 7   AGWVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISN 132
           A W SLL+AC++ GD  LA+    +L +     + + +L+SN
Sbjct: 406 AMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSN 447


>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein
           At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2
          Length = 774

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISNNEDSLCFQNNSQNLHDL 183
           W  LL++C+  GD +LA+    +L +     +   +L+SN   SL   ++S  L  L
Sbjct: 691 WEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGL 747


>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein
           At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
          Length = 595

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISN 132
           W +LL AC   GD+ LA+    Q+ Q     + D +L+SN
Sbjct: 395 WRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSN 434


>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein
           At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
          Length = 658

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISNNEDSLCFQNNSQNLHDLQAC 192
           W +LL AC   GD  + ++   QL Q +   +   ILI+N   S       +    ++  
Sbjct: 529 WQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSR--GKWKERAKTIKRM 586

Query: 193 KILGVCTESDKSLRNIE 243
           K +GV  E+  S   IE
Sbjct: 587 KAMGVTKETGISSIEIE 603


>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein
           At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
          Length = 882

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISN 132
           W S+L AC+T GD   A+   R++ + +      SIL SN
Sbjct: 681 WASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASN 720
tr_hit_id B6K1A6
Definition tr|B6K1A6|B6K1A6_SCHJP Transforming growth factor beta-1-induced transcript 1 protein OS=Schizosaccharomyces japonicus yFS275
Align length 83
Score (bit) 36.2
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917540|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_B05.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6K1A6|B6K1A6_SCHJP Transforming growth factor beta-1-induced...    36   0.98 
tr|A7QRN2|A7QRN2_VITVI Chromosome undetermined scaffold_151, who...    36   1.3  
tr|Q8S7U9|Q8S7U9_ORYSJ Putative pentatricopeptide repeat contain...    35   1.7  
tr|Q10R82|Q10R82_ORYSJ Os03g0168500 protein OS=Oryza sativa subs...    35   1.7  
tr|B8APA5|B8APA5_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.7  
tr|B8A020|B8A020_MAIZE Putative uncharacterized protein OS=Zea m...    35   2.2  
tr|A7PDC6|A7PDC6_VITVI Chromosome chr17 scaffold_12, whole genom...    35   2.2  
tr|Q8P943|Q8P943_XANCP Putative uncharacterized protein XCC2023 ...    35   2.9  
tr|Q4UUQ6|Q4UUQ6_XANC8 Putative uncharacterized protein OS=Xanth...    35   2.9  
tr|B0RT92|B0RT92_XANCB Putative signal transduction protein OS=X...    35   2.9  
tr|Q0I1R7|Q0I1R7_HAES1 Transcriptional regulator, LacI family OS...    34   3.8  
tr|B0UV52|B0UV52_HAES2 Alanine racemase OS=Haemophilus somnus (s...    34   3.8  
tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragmen...    34   5.0  
tr|B0X1H9|B0X1H9_CULQU Rhomboid OS=Culex quinquefasciatus GN=Cpi...    34   5.0  
tr|Q7XX33|Q7XX33_ORYSJ OSJNBa0060B20.9 protein OS=Oryza sativa s...    33   6.5  
tr|Q0JER4|Q0JER4_ORYSJ Os04g0218100 protein (Fragment) OS=Oryza ...    33   6.5  
tr|Q0DJB1|Q0DJB1_ORYSJ Os05g0305300 protein OS=Oryza sativa subs...    33   6.5  
tr|A3B2E8|A3B2E8_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.5  

>tr|B6K1A6|B6K1A6_SCHJP Transforming growth factor beta-1-induced
           transcript 1 protein OS=Schizosaccharomyces japonicus
           yFS275 GN=SJAG_02831 PE=4 SV=1
          Length = 382

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = -3

Query: 248 ASSMFLRDLSLSVHTPNILHA*RSCKFCELFWKQRLSSLFEIRIESSVPAALHCASCLKQ 69
           A S  L    +S HTP  L+           + QR SSL+E  I S+ P+ LH +S  K 
Sbjct: 131 AHSNHLHSTKISSHTPVNLNN----------YAQRCSSLYEPSIRSTTPSLLHRSSSQKL 180

Query: 68  CFA---NVLSPKVLQAVSKDTHP 9
           C+     + + +++ A ++  HP
Sbjct: 181 CYGCGQPLRAGRIITAANQKMHP 203


>tr|A7QRN2|A7QRN2_VITVI Chromosome undetermined scaffold_151, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005426001 PE=4 SV=1
          Length = 570

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISN 132
           W SLL ACKT+G+  +A+   R+L +  +    D +L+SN
Sbjct: 370 WQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSN 409


>tr|Q8S7U9|Q8S7U9_ORYSJ Putative pentatricopeptide repeat containing
           protein OS=Oryza sativa subsp. japonica
           GN=OSJNBa0091P11.28 PE=4 SV=1
          Length = 545

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISN 132
           W +LL+AC+  G+  LAKH  RQL +     + D +L+SN
Sbjct: 449 WRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSN 488


>tr|Q10R82|Q10R82_ORYSJ Os03g0168500 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0168500 PE=4 SV=1
          Length = 823

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISN 132
           W +LL+AC+  G+  LAKH  RQL +     + D +L+SN
Sbjct: 419 WRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSN 458


>tr|B8APA5|B8APA5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10176 PE=4 SV=1
          Length = 523

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISN 132
           W +LL+AC+  G+  LAKH  RQL +     + D +L+SN
Sbjct: 419 WRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSN 458


>tr|B8A020|B8A020_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 537

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISNNEDSLCFQNNSQNLHDL 183
           W +LL AC+  G+  LA+H  R+L +  +  + D +L+SN   S+     S+N+  L
Sbjct: 452 WRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKL 508


>tr|A7PDC6|A7PDC6_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016225001
           PE=4 SV=1
          Length = 534

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 13  WVSLLTACKTFGDNTLAKHCFRQLAQWSAAGTEDSILISNNEDSL 147
           W +LL ACKT G   L +H  R++ +   +  E+ +L+SN   SL
Sbjct: 334 WRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASL 378


>tr|Q8P943|Q8P943_XANCP Putative uncharacterized protein XCC2023
           OS=Xanthomonas campestris pv. campestris GN=XCC2023 PE=4
           SV=1
          Length = 601

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 28/83 (33%), Positives = 38/83 (45%)
 Frame = +1

Query: 67  HCFRQLAQWSAAGTEDSILISNNEDSLCFQNNSQNLHDLQACKILGVCTESDKSLRNIEL 246
           H  RQLA W A G + S+ I  N  S  F N +     +  C+ LG+ TE  +    +E+
Sbjct: 415 HALRQLAAWRAGGLDFSLSI--NLSSRDFGNVNLASDVIDRCQALGIPTERIE----LEI 468

Query: 247 ARGGVKTERVVNGNTYAAPLLRA 315
             G     R +  N  A P LRA
Sbjct: 469 TEG-----RWLRSNVQALPRLRA 486


>tr|Q4UUQ6|Q4UUQ6_XANC8 Putative uncharacterized protein
           OS=Xanthomonas campestris pv. campestris (strain 8004)
           GN=XC_2161 PE=4 SV=1
          Length = 601

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 28/83 (33%), Positives = 38/83 (45%)
 Frame = +1

Query: 67  HCFRQLAQWSAAGTEDSILISNNEDSLCFQNNSQNLHDLQACKILGVCTESDKSLRNIEL 246
           H  RQLA W A G + S+ I  N  S  F N +     +  C+ LG+ TE  +    +E+
Sbjct: 415 HALRQLAAWRAGGLDFSLSI--NLSSRDFGNVNLASDVIDRCQALGIPTERIE----LEI 468

Query: 247 ARGGVKTERVVNGNTYAAPLLRA 315
             G     R +  N  A P LRA
Sbjct: 469 TEG-----RWLRSNVQALPRLRA 486


>tr|B0RT92|B0RT92_XANCB Putative signal transduction protein
           OS=Xanthomonas campestris pv. campestris (strain B100)
           GN=xcc-b100_2323 PE=4 SV=1
          Length = 592

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 28/83 (33%), Positives = 38/83 (45%)
 Frame = +1

Query: 67  HCFRQLAQWSAAGTEDSILISNNEDSLCFQNNSQNLHDLQACKILGVCTESDKSLRNIEL 246
           H  RQLA W A G + S+ I  N  S  F N +     +  C+ LG+ TE  +    +E+
Sbjct: 406 HALRQLAAWRAGGLDFSLSI--NLSSRDFGNVNLASDVIDRCQALGIPTERIE----LEI 459

Query: 247 ARGGVKTERVVNGNTYAAPLLRA 315
             G     R +  N  A P LRA
Sbjct: 460 TEG-----RWLRSNVQALPRLRA 477