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NBDC - LSDB Archive
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BP917542
Clone id YMU001_000102_B08
Library
Length 295
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCACAGCTATCTCTCCTTAGTAAAGCTCATGTCAAATTGTTGCAAGCTAAGTATCCACTT
TTGCAATTTAGGACTATCCCCAAGACACCTTAGTGCACGAGGCAATAAACTACATGATGT
CAACACCACAAAAGGCTTACAAATAAGATAGGATTTCAGCCTTTTTGTTGCATATACCAA
TGCCCAAACCAATTGCTCGATCTCATGCCAAGATTTTTGTTCATCATTCTTCACTTTGCT
TATGTAGTAAACCGGCCTCATATAAGATTGCTTTTTTCCTTTTTGCATCAATACT
■■Homology search results ■■ -
sp_hit_id P04323
Definition sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster
Align length 75
Score (bit) 45.4
E-value 9.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917542|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_B08.
         (295 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra...    45   9e-05
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra...    42   7e-04
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra...    34   0.20 
sp|P33042|VL03_VARV Protein L3 OS=Variola virus GN=L3L PE=3 SV=1       31   2.2  
sp|P07614|VL03_VACCW Protein L3 OS=Vaccinia virus (strain Wester...    31   2.2  
sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia vi...    29   6.5  
sp|P21031|VL03_VACCC Protein L3 OS=Vaccinia virus (strain Copenh...    29   8.5  

>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
           transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1058

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 23/75 (30%), Positives = 42/75 (56%)
 Frame = -2

Query: 255 PVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTSCSLLPRALRCLGD 76
           P+ YIS+  N+ + ++  IE+ + A+V+ATK  + YL+ + F + +    L    R    
Sbjct: 530 PLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDP 589

Query: 75  SPKLQKWILSLQQFD 31
           + KL +W + L +FD
Sbjct: 590 NSKLTRWRVKLSEFD 604


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
           transposon 297 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1059

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 24/87 (27%), Positives = 45/87 (51%)
 Frame = -2

Query: 294 VLMQKGKKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTS 115
           VL Q G       P+ +IS+  ND + ++  IE+ + A+V+ATK  + YL+ + F++ + 
Sbjct: 522 VLSQNG------HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASD 575

Query: 114 CSLLPRALRCLGDSPKLQKWILSLQQF 34
              L           KL++W + L ++
Sbjct: 576 HQPLRWLHNLKEPGAKLERWRVRLSEY 602


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
           transposon opus OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1003

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -2

Query: 258 RPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLI-CKPFVVLTSCSLLPRALRCL 82
           RP+ YIS+  N  ++++  IE+ + A++++   L++YL       V T    L  AL   
Sbjct: 459 RPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNR 518

Query: 81  GDSPKLQKWILSLQQFD 31
             + KL++W   +++++
Sbjct: 519 NFNAKLKRWKARIEEYN 535


>sp|P33042|VL03_VARV Protein L3 OS=Variola virus GN=L3L PE=3 SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
 Frame = -2

Query: 264 YMRPVYYISKVKNDEQKS-WHEIEQLV-------WALVYATKRLK--SYLICKPFVVLTS 115
           Y+ P YY+ K  +DE+ S W E+  LV       + L+ A KR+   S L  + F     
Sbjct: 83  YLSPAYYMLKQVDDEEMSCWSELSSLVRSKKAVGFPLLKAAKRISHGSMLYFEQFKNSKV 142

Query: 114 CSLLPRALRCLGDSPKLQKWIL 49
             L P+ ++CL D+   Q  ++
Sbjct: 143 VRLTPQ-VKCLNDTVIFQTVVI 163


>sp|P07614|VL03_VACCW Protein L3 OS=Vaccinia virus (strain Western
           Reserve) GN=F4 PE=3 SV=1
          Length = 350

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
 Frame = -2

Query: 264 YMRPVYYISKVKNDEQKS-WHEIEQLV-------WALVYATKRLK--SYLICKPFVVLTS 115
           Y+ P YY+ K  +DE+ S W E+  LV       + L+ A KR+   S L  + F     
Sbjct: 84  YLSPAYYMLKQVDDEEMSCWSELSSLVRSRKAVGFPLLKAAKRISHGSMLYFEQFKNSKV 143

Query: 114 CSLLPRALRCLGDSPKLQKWIL 49
             L P+ ++CL D+   Q  ++
Sbjct: 144 VRLTPQ-VKCLNDTVIFQTVVI 164


>sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia virus
           (isolate 57) GN=pol PE=3 SV=1
          Length = 1204

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 264 YMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTSCSLLPRALRC 85
           + RPV Y+SK  +     W    ++V A+   TK +    + +P V+L      P A+  
Sbjct: 513 WRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDVGKLTMGQPLVILA-----PHAVEA 567

Query: 84  LGDSPKLQKWI 52
           L   P   +W+
Sbjct: 568 LVKQPP-DRWL 577


>sp|P21031|VL03_VACCC Protein L3 OS=Vaccinia virus (strain
           Copenhagen) GN=L3L PE=3 SV=1
          Length = 350

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
 Frame = -2

Query: 264 YMRPVYYISKVKNDEQKS-WHEIEQLV-------WALVYATKRLK--SYLICKPFVVLTS 115
           Y+ P YY+ K  +DE+ S W E+  LV       + L+ A KR+   S L  +       
Sbjct: 84  YLSPAYYMLKQVDDEEMSCWSELSSLVRSRKAVGFPLLKAAKRISHGSMLYFEQLKNSKV 143

Query: 114 CSLLPRALRCLGDSPKLQKWIL 49
             L P+ ++CL D+   Q  ++
Sbjct: 144 VKLTPQ-VKCLNDTVIFQTVVI 164
tr_hit_id B4MHZ6
Definition tr|B4MHZ6|B4MHZ6_DROWI GK21267 OS=Drosophila willistoni
Align length 87
Score (bit) 57.8
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917542|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_B08.
         (295 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4MHZ6|B4MHZ6_DROWI GK21267 OS=Drosophila willistoni GN=GK212...    58   3e-07
tr|B4NNU8|B4NNU8_DROWI GK19423 OS=Drosophila willistoni GN=GK194...    57   3e-07
tr|Q0ZCB7|Q0ZCB7_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1      55   1e-06
tr|Q0ZCD0|Q0ZCD0_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1      55   2e-06
tr|Q9SYC1|Q9SYC1_ARATH F11M15.5 protein OS=Arabidopsis thaliana ...    54   3e-06
tr|Q5W6Z3|Q5W6Z3_ORYSJ Putative polyprotein OS=Oryza sativa subs...    54   4e-06
tr|A5BDE4|A5BDE4_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|Q94885|Q94885_DROME Orf protein OS=Drosophila melanogaster GN...    54   4e-06
tr|Q7X8Z6|Q7X8Z6_ORYSJ OSJNBa0093P23.6 protein (OSJNBa0041M21.11...    54   5e-06
tr|Q01LU6|Q01LU6_ORYSA OSIGBa0136B09.5 protein OS=Oryza sativa G...    54   5e-06
tr|A5C0Q4|A5C0Q4_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|A5BID3|A5BID3_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|A5BGI1|A5BGI1_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|A5BG34|A5BG34_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|Q9SIX9|Q9SIX9_ARATH Putative retroelement gag/pol polyprotein...    53   7e-06
tr|Q0E0Q2|Q0E0Q2_ORYSJ Os02g0530800 protein OS=Oryza sativa subs...    53   7e-06
tr|A5B854|A5B854_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|A5AMT7|A5AMT7_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|A5AH70|A5AH70_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|A5C3J0|A5C3J0_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06
tr|A5BXQ2|A5BXQ2_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06
tr|A5BT86|A5BT86_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06
tr|A5B7S8|A5B7S8_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06
tr|Q2QXD9|Q2QXD9_ORYSJ Retrotransposon protein, putative, unclas...    52   1e-05
tr|A5C692|A5C692_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5BY14|A5BY14_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5BWF3|A5BWF3_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5BB70|A5BB70_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5B0C4|A5B0C4_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5AYT6|A5AYT6_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05

>tr|B4MHZ6|B4MHZ6_DROWI GK21267 OS=Drosophila willistoni GN=GK21267
           PE=4 SV=1
          Length = 1079

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 28/87 (32%), Positives = 48/87 (55%)
 Frame = -2

Query: 291 LMQKGKKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTSC 112
           LMQ+ +    M PV Y S+     +  +H  E    A++YA +R + YL  +PF+++T C
Sbjct: 718 LMQR-QTDGKMHPVSYYSRKATAAESRYHSFELETLAIIYAVRRFRVYLEHRPFLIVTDC 776

Query: 111 SLLPRALRCLGDSPKLQKWILSLQQFD 31
           + L + L     +P++ +W L L+ FD
Sbjct: 777 NSLVQTLSKKSINPRIARWSLELENFD 803


>tr|B4NNU8|B4NNU8_DROWI GK19423 OS=Drosophila willistoni GN=GK19423
           PE=4 SV=1
          Length = 862

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 31/88 (35%), Positives = 49/88 (55%)
 Frame = -2

Query: 294 VLMQKGKKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTS 115
           VL+QK +    + PV Y SK+ +  +   H  E    A+VY+ KR ++YL   PF ++T 
Sbjct: 671 VLLQK-QTDGKLHPVSYFSKMASAAESKLHSYELETLAIVYSLKRFETYLKFIPFKIVTD 729

Query: 114 CSLLPRALRCLGDSPKLQKWILSLQQFD 31
           C+ L   LR  G S K+ +W L L+ ++
Sbjct: 730 CNSLALTLRNGGHSAKIARWALLLENYN 757


>tr|Q0ZCB7|Q0ZCB7_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
          Length = 1332

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 31/95 (32%), Positives = 54/95 (56%)
 Frame = -2

Query: 294 VLMQKGKKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTS 115
           VL Q+  K+SY+  +YY SK  N  Q ++   ++ + A+V+A ++ +SYL+  P VV + 
Sbjct: 634 VLGQRKDKKSYV--IYYASKTLNSSQMNYTTTKKELLAIVFACEKFRSYLVGSPVVVFSD 691

Query: 114 CSLLPRALRCLGDSPKLQKWILSLQQFDMSFTKER 10
            + L   L       +L  WIL LQ+FD++   ++
Sbjct: 692 HAALKYLLSKKDSKDRLVWWILLLQEFDITIKDKK 726


>tr|Q0ZCD0|Q0ZCD0_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
          Length = 1139

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 30/95 (31%), Positives = 54/95 (56%)
 Frame = -2

Query: 294 VLMQKGKKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTS 115
           VL Q+  K+ Y+  +YY SK  N  Q ++   ++ + A+V+A ++ +SYL+  P VV + 
Sbjct: 655 VLGQRKDKKPYV--IYYASKTLNSAQMNYTTTKKELLAVVFACEKFRSYLVGSPVVVFSD 712

Query: 114 CSLLPRALRCLGDSPKLQKWILSLQQFDMSFTKER 10
            + L   L       +L +WIL LQ+FD++   ++
Sbjct: 713 HAALKYLLSKKDSKARLVRWILLLQEFDITIKDKK 747


>tr|Q9SYC1|Q9SYC1_ARATH F11M15.5 protein OS=Arabidopsis thaliana
            GN=F11M15.5 PE=4 SV=1
          Length = 1295

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 29/84 (34%), Positives = 48/84 (57%)
 Frame = -2

Query: 273  KQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTSCSLLPRA 94
            ++S  RP++Y+SK  +D +  +  +E+L  A+V + ++L+ Y    P VVLTS   L   
Sbjct: 809  ERSDERPIFYVSKSFSDAETRYPMMEKLALAVVTSARKLRPYFQSHPIVVLTSLP-LRAI 867

Query: 93   LRCLGDSPKLQKWILSLQQFDMSF 22
            L     S +L KW + L +FD+ F
Sbjct: 868  LHSPSQSGRLAKWAIELSEFDLEF 891


>tr|Q5W6Z3|Q5W6Z3_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0036C12.3 PE=4 SV=1
          Length = 1565

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/86 (29%), Positives = 51/86 (59%)
 Frame = -2

Query: 276  KKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTSCSLLPR 97
            +++   RPVYY+S+  +D +  + +I++L++A++  +++L+ Y       V++SC  L  
Sbjct: 1098 EREKVQRPVYYVSEALHDAKTRYPQIQKLLYAVIMTSRKLRHYFQAHRVTVVSSCP-LGE 1156

Query: 96   ALRCLGDSPKLQKWILSLQQFDMSFT 19
             +R       + KW++ L QFD+ FT
Sbjct: 1157 VVRNKDVVGCIVKWVVELSQFDVHFT 1182


>tr|A5BDE4|A5BDE4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033762 PE=4 SV=1
          Length = 414

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 30/95 (31%), Positives = 53/95 (55%)
 Frame = -2

Query: 294 VLMQKGKKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTS 115
           VL Q+  ++ Y+  +YY SK  N+ QK++  IE+ + A+V+   + ++YL+    +V T 
Sbjct: 12  VLGQREDRKPYV--IYYASKTLNEAQKNYTTIEKELLAVVFTLDKFRAYLVGSFIIVFTD 69

Query: 114 CSLLPRALRCLGDSPKLQKWILSLQQFDMSFTKER 10
            S L   L       +L +WIL LQ+FD+    ++
Sbjct: 70  HSALKYLLTKQDAKARLIRWILLLQEFDLQIRDKK 104


>tr|Q94885|Q94885_DROME Orf protein OS=Drosophila melanogaster GN=ORF
            PE=1 SV=1
          Length = 1494

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 29/88 (32%), Positives = 47/88 (53%)
 Frame = -2

Query: 294  VLMQKGKKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTS 115
            VLMQK + Q +  PV + SK   D +  +H  E    A+VY+ +R + YL  + F ++T 
Sbjct: 1027 VLMQKKEDQKW-HPVSFFSKRTTDIESKYHSFELETLAIVYSLRRFRVYLHWRTFKIVTD 1085

Query: 114  CSLLPRALRCLGDSPKLQKWILSLQQFD 31
            C+ L   L     +P++ +W L  Q +D
Sbjct: 1086 CNSLILTLSKKELNPRIARWALEFQGYD 1113


>tr|Q7X8Z6|Q7X8Z6_ORYSJ OSJNBa0093P23.6 protein (OSJNBa0041M21.11
            protein) OS=Oryza sativa subsp. japonica
            GN=OSJNBa0093P23.6 PE=4 SV=2
          Length = 1770

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/89 (26%), Positives = 52/89 (58%)
 Frame = -2

Query: 276  KKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTSCSLLPR 97
            +++   RPVYY+SK  +D +  + +I++L++A++  +++L+ Y       V++S   L  
Sbjct: 1182 EREKIQRPVYYVSKALHDAKTRYSQIQKLLYAVIMTSRKLRHYFQAHRVTVVSSFP-LGE 1240

Query: 96   ALRCLGDSPKLQKWILSLQQFDMSFTKER 10
             +R      ++ KW++ L QFD+ F  ++
Sbjct: 1241 VVRNKDVVSRIAKWVVELSQFDVHFVPQK 1269


>tr|Q01LU6|Q01LU6_ORYSA OSIGBa0136B09.5 protein OS=Oryza sativa
            GN=OSIGBa0136B09.5 PE=4 SV=1
          Length = 1770

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/89 (26%), Positives = 52/89 (58%)
 Frame = -2

Query: 276  KKQSYMRPVYYISKVKNDEQKSWHEIEQLVWALVYATKRLKSYLICKPFVVLTSCSLLPR 97
            +++   RPVYY+SK  +D +  + +I++L++A++  +++L+ Y       V++S   L  
Sbjct: 1182 EREKIQRPVYYVSKALHDAKTRYSQIQKLLYAVIMTSRKLRHYFQAHRVTVVSSFP-LGE 1240

Query: 96   ALRCLGDSPKLQKWILSLQQFDMSFTKER 10
             +R      ++ KW++ L QFD+ F  ++
Sbjct: 1241 VVRNKDVVSRIAKWVVELSQFDVHFVPQK 1269