BP917544
Clone id YMU001_000102_B12
Library
Length 383
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TATGCTTCAGAAGATTTCGAATGGGATAATGTAAAAAAGCTAGCTATCAAGTATGGGACA
GAAGCAAACACCAATCTGATGCGTGAGTTTCTAAGAGAAACAAGCAGCATGGAATAGATG
ATTGATAGCCACAAAGGTCATATAAAGGTTCCAGCTGCTTGATTCCAAATGGCCATTCAT
CCAAAAGTACAGGTAATGCAGTGACGTCTCTTAGCATTTAAACAGGTAAGAATATGGAAG
AGCTTTGTTCATGGGAAAGGAAGAAGGTATAACTGTTTCAATGAAGGTGTGATTTATGCT
ACAGGCAGGGTTGTCCAGATTCCCTCAACGAAAATTTGTTTCAGGTCTTCAAGGGGGGTA
ATGGAATCATGACTATAAACATA
■■Homology search results ■■ -
sp_hit_id Q7TPH6
Definition sp|Q7TPH6|MYCB2_MOUSE Probable E3 ubiquitin-protein ligase MYCBP2 OS=Mus musculus
Align length 24
Score (bit) 30.4
E-value 2.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917544|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_B12.
(383 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7TPH6|MYCB2_MOUSE Probable E3 ubiquitin-protein ligase MYCBP... 30 2.8
sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP... 29 6.3
sp|O15218|GP182_HUMAN G-protein coupled receptor 182 OS=Homo sap... 29 8.2

>sp|Q7TPH6|MYCB2_MOUSE Probable E3 ubiquitin-protein ligase MYCBP2
OS=Mus musculus GN=Mycbp2 PE=1 SV=2
Length = 4711

Score = 30.4 bits (67), Expect = 2.8
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3

Query: 177 SSKSTGNAVTSLSI*TGKNMEELC 248
+S+ GN VTS++ TGK +EELC
Sbjct: 3834 NSRDLGNKVTSMTFLTGKAVEELC 3857


>sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2
OS=Homo sapiens GN=MYCBP2 PE=1 SV=3
Length = 4640

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3

Query: 177 SSKSTGNAVTSLSI*TGKNMEELC 248
+S+ GN VTS++ TGK +E+LC
Sbjct: 3763 NSRDLGNKVTSMTFLTGKAVEDLC 3786


>sp|O15218|GP182_HUMAN G-protein coupled receptor 182 OS=Homo
sapiens GN=GPR182 PE=2 SV=1
Length = 404

Score = 28.9 bits (63), Expect = 8.2
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = -1

Query: 269 YLLPFP*TKLFHILTCLNAK-------RRHC-ITCTFG*MAIWNQAAGTFI*PLWLSIIY 114
+LLPFP +F++LT + RRHC + C + F+ WL
Sbjct: 227 FLLPFPLITVFNVLTACRLRQPGQPKSRRHCLLLCAY---------VAVFV-MCWLPYHV 276

Query: 113 SMLLVSLRNSRIRL 72
++LL++L + I L
Sbjct: 277 TLLLLTLHGTHISL 290


tr_hit_id Q7EZV3
Definition tr|Q7EZV3|Q7EZV3_ORYSJ Os08g0425200 protein OS=Oryza sativa subsp. japonica
Align length 38
Score (bit) 49.7
E-value 7.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917544|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_B12.
(383 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7EZV3|Q7EZV3_ORYSJ Os08g0425200 protein OS=Oryza sativa subs... 50 7e-05
tr|A2YVD6|A2YVD6_ORYSI Putative uncharacterized protein OS=Oryza... 50 7e-05
tr|Q9XEA2|Q9XEA2_ARATH Putative uncharacterized protein T19B17.5... 49 1e-04
tr|Q94AU9|Q94AU9_ARATH Putative uncharacterized protein At4g0433... 49 1e-04
tr|A9SKM1|A9SKM1_PHYPA Predicted protein (Fragment) OS=Physcomit... 49 1e-04
tr|A7QUK8|A7QUK8_VITVI Chromosome chr10 scaffold_179, whole geno... 48 2e-04
tr|A9NLG6|A9NLG6_PICSI Putative uncharacterized protein OS=Picea... 44 0.005
tr|Q00X91|Q00X91_OSTTA Chromosome 13 contig 1, DNA sequence OS=O... 39 0.13
tr|A4S6B8|A4S6B8_OSTLU Predicted protein OS=Ostreococcus lucimar... 35 1.9

>tr|Q7EZV3|Q7EZV3_ORYSJ Os08g0425200 protein OS=Oryza sativa subsp.
japonica GN=P0456B03.109 PE=2 SV=1
Length = 186

Score = 49.7 bits (117), Expect = 7e-05
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSME 114
Y DFEWDN+K+L+ K EANT LMR+++ ETS +E
Sbjct: 146 YVKHDFEWDNLKRLSFKMVDEANTKLMRDYVLETSHIE 183


>tr|A2YVD6|A2YVD6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_29294 PE=4 SV=1
Length = 186

Score = 49.7 bits (117), Expect = 7e-05
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSME 114
Y DFEWDN+K+L+ K EANT LMR+++ ETS +E
Sbjct: 146 YVKHDFEWDNLKRLSFKMVDEANTKLMRDYVLETSHIE 183


>tr|Q9XEA2|Q9XEA2_ARATH Putative uncharacterized protein T19B17.5
(Putative uncharacterized protein AT4g04330)
OS=Arabidopsis thaliana GN=T19B17.5 PE=4 SV=1
Length = 56

Score = 49.3 bits (116), Expect = 1e-04
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSME 114
Y DFEWDN+K+LA K ++NT LMRE++ ETS +E
Sbjct: 14 YCKNDFEWDNMKRLAFKNVDDSNTRLMREYVLETSHVE 51


>tr|Q94AU9|Q94AU9_ARATH Putative uncharacterized protein At4g04330
OS=Arabidopsis thaliana GN=At4g04330 PE=2 SV=1
Length = 174

Score = 49.3 bits (116), Expect = 1e-04
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSME 114
Y DFEWDN+K+LA K ++NT LMRE++ ETS +E
Sbjct: 132 YCKNDFEWDNMKRLAFKNVDDSNTRLMREYVLETSHVE 169


>tr|A9SKM1|A9SKM1_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_131396 PE=4 SV=1
Length = 121

Score = 49.3 bits (116), Expect = 1e-04
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSME 114
YA++DFEWDN++ L+ K E N LMR++L ETS+ME
Sbjct: 84 YANQDFEWDNLQSLSFKQLEEGNKTLMRKYLTETSNME 121


>tr|A7QUK8|A7QUK8_VITVI Chromosome chr10 scaffold_179, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00006889001
PE=4 SV=1
Length = 186

Score = 48.1 bits (113), Expect = 2e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSME 114
Y DFEWDN+K+LA K E+NT +MR+++ ETS E
Sbjct: 148 YCKNDFEWDNLKRLAFKMVDESNTGIMRDYVLETSHSE 185


>tr|A9NLG6|A9NLG6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 171

Score = 43.5 bits (101), Expect = 0.005
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSME 114
YA DFEW+ ++KL ++ E+N LMR+++ ETS +E
Sbjct: 134 YAQLDFEWEKLRKLVLENANESNKKLMRDYISETSRVE 171


>tr|Q00X91|Q00X91_OSTTA Chromosome 13 contig 1, DNA sequence
OS=Ostreococcus tauri GN=Ot13g00920 PE=4 SV=1
Length = 196

Score = 38.9 bits (89), Expect = 0.13
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLR 96
YAS+DFEW NV+KL +K N MRE+++
Sbjct: 154 YASDDFEWKNVEKLCVKSMVVGNETAMREWIK 185


>tr|A4S6B8|A4S6B8_OSTLU Predicted protein OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_27062 PE=4 SV=1
Length = 144

Score = 35.0 bits (79), Expect = 1.9
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1

Query: 1 YASEDFEWDNVKKLAIKYGTEANTNLMREFLR 96
YA EDFEW NV KL + N MRE+L+
Sbjct: 106 YAEEDFEWHNVAKLTSESIAAGNERAMREWLK 137