BP917552 |
Clone id |
YMU001_000102_C09 |
Library |
YMU01 |
Length |
432 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000102_C09. |
Accession |
BP917552 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATTACGAGAGATCTTGGAATGTCCTTTGCCTGGTGTAATTCCGGTGATCAACTATGAAAA CTCATTTGATGTGCATGTGTTTGTCCTTATCTAAAGTTGAGCTCCATTGAAGTTTATGGG GATTGGGTAGTCAAAAGTTTTAGGTTCTTGCACGTGTGTTCAAAGGGGTTCTCAAAAGCA TTGTAACTTGGGTAGCCATGGCTTTCTCTTATCCGGAGTTTCATGGAAGAAGTGATGAAG ATGTGGAAGATTTTTTGGAAAAGATGGAGGTTGCCTGCATTAGCAACCAGATTCATGACC CTGCGCAGATGTTACGTCTTCTCCAAATTTGTTTGAAGAATGATGCACGAGTCTGGTCCA AAACATTTGAAGAGGAGTTGCGTGCAGTGGATCCACCTGTAAGATTGAGTTGGGACAATC TAAGGCATGGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8BLA1 |
Definition |
sp|Q8BLA1|DLEC1_MOUSE Deleted in lung and esophageal cancer protein 1 homolog OS=Mus musculus |
Align length |
91 |
Score (bit) |
33.9 |
E-value |
0.29 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SKF2 |
Definition |
tr|Q9SKF2|Q9SKF2_ARATH Putative Athila retroelement ORF1 protein OS=Arabidopsis thaliana |
Align length |
73 |
Score (bit) |
38.1 |
E-value |
0.22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917552|Adiantum capillus-veneris mRNA, clone: YMU001_000102_C09. (432 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9SKF2|Q9SKF2_ARATH Putative Athila retroelement ORF1 protein... 38 0.22 tr|Q9SKF3|Q9SKF3_ARATH Putative Athila retroelement ORF1 protein... 37 0.65 tr|Q4V821|Q4V821_XENLA MGC114828 protein OS=Xenopus laevis GN=wd... 36 1.1 tr|Q6IP46|Q6IP46_XENLA MGC78960 protein OS=Xenopus laevis GN=MGC... 35 1.9 tr|Q32NV2|Q32NV2_XENLA MGC78960 protein OS=Xenopus laevis GN=MGC... 35 1.9 tr|A8WH02|A8WH02_XENTR LOC100127736 protein OS=Xenopus tropicali... 35 1.9 tr|A5C7E6|A5C7E6_VITVI Putative uncharacterized protein OS=Vitis... 33 5.5 tr|Q9XX50|Q9XX50_CAEEL Protein Y38H6C.9, partially confirmed by ... 33 7.1 tr|A5H2Q7|A5H2Q7_LODEL Putative uncharacterized protein OS=Lodde... 33 7.1 tr|A5H2P5|A5H2P5_LODEL Putative uncharacterized protein OS=Lodde... 33 7.1 tr|Q2AA33|Q2AA33_ASPOF Retrotransposon gag protein OS=Asparagus ... 33 9.3
>tr|Q9SKF2|Q9SKF2_ARATH Putative Athila retroelement ORF1 protein OS=Arabidopsis thaliana GN=At2g13260 PE=4 SV=1 Length = 622
Score = 38.1 bits (87), Expect = 0.22 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = +3
Query: 216 EFHGRSDEDVEDFLEKMEVACIS---NQIHDPAQMLRLLQICLKNDARVWSKTFEEELRA 386 +FHG S ED D LE+ ++ C + N I + A LRL L + AR+W K + R+ Sbjct: 71 KFHGLSMEDPLDHLEQFDMLCSTVKINGISEDAFKLRLFPFSLGDRARIWEKNLPQ--RS 128
Query: 387 VDPPVRLSWDNLR 425 + SWD + Sbjct: 129 I-----TSWDQCK 136
>tr|Q9SKF3|Q9SKF3_ARATH Putative Athila retroelement ORF1 protein OS=Arabidopsis thaliana GN=At2g13250 PE=2 SV=1 Length = 507
Score = 36.6 bits (83), Expect = 0.65 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +3
Query: 216 EFHGRSDEDVEDFLEKMEVACIS---NQIHDPAQMLRLLQICLKNDARVWSKTFEE 374 +FHG S ED D L++ ++ C + N I + A LRL L + AR+W K + Sbjct: 144 KFHGLSMEDPLDHLDQFDMLCSTVKINGISEDAFKLRLFPFSLGDRARIWEKNLPQ 199
>tr|Q4V821|Q4V821_XENLA MGC114828 protein OS=Xenopus laevis GN=wdr16 PE=2 SV=1 Length = 617
Score = 35.8 bits (81), Expect = 1.1 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = +3
Query: 204 FSYPEFHGRSDEDVEDFLEKMEVACISNQIHD---PAQMLRLLQICLKNDARVWSKTFEE 374 F+YPEF E++ C S I+D P L C KND RVW T + Sbjct: 313 FNYPEFK-----------EELITTCHSEAINDITFPFGTSELFATCSKNDIRVWHTTTHK 361
Query: 375 ELRAVDPP 398 EL V P Sbjct: 362 ELLRVTVP 369
>tr|Q6IP46|Q6IP46_XENLA MGC78960 protein OS=Xenopus laevis GN=MGC78960 PE=2 SV=1 Length = 619
Score = 35.0 bits (79), Expect = 1.9 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Frame = +3
Query: 204 FSYPEFHGRSDEDVEDFLEKMEVACISNQIHD---PAQMLRLLQICLKNDARVWSKTFEE 374 F+YPEF E++ C S I+D P L C KND RVW T + Sbjct: 315 FNYPEFK-----------EELITTCHSEAINDITFPFGTSELFATCSKNDIRVWHTTTHK 363
Query: 375 ELRAVDPP--VRLSWDNLRHG 431 E+ + P L+ D +R G Sbjct: 364 EMLRITVPNMTCLAIDFMRDG 384
>tr|Q32NV2|Q32NV2_XENLA MGC78960 protein OS=Xenopus laevis GN=MGC78960 PE=2 SV=1 Length = 619
Score = 35.0 bits (79), Expect = 1.9 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Frame = +3
Query: 204 FSYPEFHGRSDEDVEDFLEKMEVACISNQIHD---PAQMLRLLQICLKNDARVWSKTFEE 374 F+YPEF E++ C S I+D P L C KND RVW T + Sbjct: 315 FNYPEFK-----------EELITTCHSEAINDITFPFGTSELFATCSKNDIRVWHTTTHK 363
Query: 375 ELRAVDPP--VRLSWDNLRHG 431 E+ + P L+ D +R G Sbjct: 364 EMLRITVPNMTCLAIDFMRDG 384
>tr|A8WH02|A8WH02_XENTR LOC100127736 protein OS=Xenopus tropicalis GN=wdr16 PE=2 SV=1 Length = 617
Score = 35.0 bits (79), Expect = 1.9 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Frame = +3
Query: 204 FSYPEFHGRSDEDVEDFLEKMEVACISNQIHD---PAQMLRLLQICLKNDARVWSKTFEE 374 FSYPEF E++ C S I+D P L C KND RVW + Sbjct: 313 FSYPEFK-----------EELIATCHSEAINDIAFPFGTSELFATCSKNDIRVWHTATHK 361
Query: 375 ELRAVDPP--VRLSWDNLRHG 431 EL + P L+ D +R G Sbjct: 362 ELLRITVPNMTCLAIDFMRDG 382
>tr|A5C7E6|A5C7E6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007470 PE=4 SV=1 Length = 516
Score = 33.5 bits (75), Expect = 5.5 Identities = 17/71 (23%), Positives = 31/71 (43%) Frame = +3
Query: 213 PEFHGRSDEDVEDFLEKMEVACISNQIHDPAQMLRLLQICLKNDARVWSKTFEEELRAVD 392 P F G SDE L + C +N + ++R+ + L +A +W ++ Sbjct: 243 PIFRGSSDECPVTHLSRFTKVCRANNVSSVEMIMRIFPVTLDGEAALWYDL------NIE 296
Query: 393 PPVRLSWDNLR 425 P LSW+ ++ Sbjct: 297 PYSSLSWEEIK 307
>tr|Q9XX50|Q9XX50_CAEEL Protein Y38H6C.9, partially confirmed by transcript evidence OS=Caenorhabditis elegans GN=Y38H6C.9 PE=2 SV=1 Length = 282
Score = 33.1 bits (74), Expect = 7.1 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Frame = +3
Query: 246 EDFLEKMEVACISNQIHDPAQMLRLLQIC--LKNDARVWSKTFEEELRAVDPPVRLSWDN 419 E +LEK+ V C++ I + L ++C +K +ARV S E++L D ++++D Sbjct: 113 EGYLEKIYVDCVTGAIFEKLVELEQFKMCKYIKLEARVLS---EQQLLKFDSSFKVNYDF 169
Query: 420 LRH 428 L+H Sbjct: 170 LQH 172
>tr|A5H2Q7|A5H2Q7_LODEL Putative uncharacterized protein OS=Lodderomyces elongisporus GN=LELG_05772 PE=3 SV=1 Length = 565
Score = 33.1 bits (74), Expect = 7.1 Identities = 14/52 (26%), Positives = 31/52 (59%) Frame = +3
Query: 216 EFHGRSDEDVEDFLEKMEVACISNQIHDPAQMLRLLQICLKNDARVWSKTFE 371 +F G+ +D++D + + ++ + + DP ++LRL++ K D ++ KT E Sbjct: 208 DFTGKGLQDLQDGVLRTPLSPVKTFLDDPLRILRLIRFACKFDFKIEKKTLE 259
>tr|A5H2P5|A5H2P5_LODEL Putative uncharacterized protein OS=Lodderomyces elongisporus GN=LELG_05760 PE=3 SV=1 Length = 535
Score = 33.1 bits (74), Expect = 7.1 Identities = 14/52 (26%), Positives = 31/52 (59%) Frame = +3
Query: 216 EFHGRSDEDVEDFLEKMEVACISNQIHDPAQMLRLLQICLKNDARVWSKTFE 371 +F G+ +D++D + + ++ + + DP ++LRL++ K D ++ KT E Sbjct: 178 DFTGKGLQDLQDGVLRTPLSPVKTFLDDPLRILRLIRFACKFDFKIEKKTLE 229
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