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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917554
Clone id YMU001_000102_C12
Library
Length 424
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTTAAGTTGTAGAAAGTTCAACGATGACCTTGTTTTTGTTACACCTATGACTTCACAAT
CTTCAATCTCCACATCCCGTTGGATAGAAGATGCCATATCTCCATGATCGATCATCCCAT
ACTTCGAGATAGATGGGCTCGTATCTTTCCTTTGCCATATTTTCTTTTGCTAAAGTACAT
GTATATGCAGCCACTTGAAAAAAGTTATCGAGTGTGAAGGGGCGATATTGACACTTCACC
ACAAGAACCGCGACACTCTTGCTGATGACGTTGACTCTTCTATCAATCACCCGAAGACAA
ATATCAAACGGCGGACTCTTTTGGGTACTCTTTGCCTCGCCTTCATCAACCATAAACTGC
ACATCTAAGCTTTTGGTGAATGGTCTCTCAGCATCACTATCTCCAAGTATATGTTCCCCT
CCCT
■■Homology search results ■■ -
sp_hit_id Q8CF25
Definition sp|Q8CF25|CS067_MOUSE UPF0575 protein C19orf67 homolog OS=Mus musculus
Align length 103
Score (bit) 30.4
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917554|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_C12.
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CF25|CS067_MOUSE UPF0575 protein C19orf67 homolog OS=Mus mu...    30   3.0  
sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protei...    30   3.9  
sp|P34706|SDC3_CAEEL Zinc finger protein sdc-3 OS=Caenorhabditis...    29   6.6  
sp|Q4JV51|IF2_CORJK Translation initiation factor IF-2 OS=Coryne...    29   6.6  
sp|Q09543|2AAA_CAEEL Probable serine/threonine-protein phosphata...    29   6.6  
sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing prot...    29   6.8  
sp|P0C7V5|ZN812_HUMAN Putative zinc finger protein 812 OS=Homo s...    29   8.6  
sp|Q6NGN2|IF2_CORDI Translation initiation factor IF-2 OS=Coryne...    29   8.6  
sp|Q6FVD8|DNLI4_CANGA DNA ligase 4 OS=Candida glabrata GN=LIG4 P...    29   8.6  
sp|Q7TSN4|PIGW_RAT Phosphatidylinositol-glycan biosynthesis clas...    29   8.8  
sp|O93983|EXG2_HANAN Glucan 1,3-beta-glucosidase 2 OS=Hansenula ...    29   8.8  

>sp|Q8CF25|CS067_MOUSE UPF0575 protein C19orf67 homolog OS=Mus
           musculus PE=2 SV=1
          Length = 272

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
 Frame = -1

Query: 349 LMKARQRVPKRVRRLIFV---FG*LIEESTSSARVSRFLW*SVNIAPSHSITFFKWL--- 188
           L++  Q++  R+ +L+ +   FG +  E T+   +S F     +I+PSH ++ F++    
Sbjct: 75  LLEISQQLTLRLEQLVLMYASFGFVDLEETNPLSISCFFCGRFSISPSHDVSIFRYCTPA 134

Query: 187 -----HIHVL*QKKIWQRKDTSPSISKYGMIDHGDMASSIQRD 74
                H      KK+    +T+   S  G   H D      RD
Sbjct: 135 AYTASHFPRYLYKKMRWNLETTTEASSQGADSHVDYYFLCYRD 177


>sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protein 1
            OS=Danio rerio GN=xirp1 PE=1 SV=1
          Length = 2297

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 195  LKKVIECEGAILTLHHKNRDTLADDVDSSINHPKTNIKRR 314
            L KV E EG    +  ++  TL ++V + I +PK N KRR
Sbjct: 1959 LSKVQEIEGETFEVDVRSLKTLFENVPAWITNPKENTKRR 1998


>sp|P34706|SDC3_CAEEL Zinc finger protein sdc-3 OS=Caenorhabditis
           elegans GN=sdc-3 PE=2 SV=2
          Length = 2150

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
 Frame = -3

Query: 326 TQKSPPFDICLRVIDRRVNVISKSVAVLVVKCQYRPFTLDNFFQVAAYTCTLAKE----- 162
           T++  PF  C+ +    VN  S  V + + K      T      VAA    L  E     
Sbjct: 11  TEEDGPFSNCVSIAF--VNDKSIPVELRIRKAIRGKVTFTQELVVAARRLYLDGELERPD 68

Query: 161 ---NMAKERYEPIYLEVWDDRSWRYGIFYP 81
              ++A + Y+P  + V D R+W Y   YP
Sbjct: 69  LNYHVAADFYDPFMIPVPDHRNWEYNPLYP 98


>sp|Q4JV51|IF2_CORJK Translation initiation factor IF-2
           OS=Corynebacterium jeikeium (strain K411) GN=infB PE=3
           SV=1
          Length = 922

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 410 ILGDSDAERPFTKSLDVQFMVDEGEAKSTQKSPP 309
           ++   D +R   +S D+QF  DEGE +   + PP
Sbjct: 388 VVSPEDEDRELLESFDLQFGEDEGEDEDLAQRPP 421


>sp|Q09543|2AAA_CAEEL Probable serine/threonine-protein phosphatase
           PP2A regulatory subunit OS=Caenorhabditis elegans
           GN=paa-1 PE=2 SV=2
          Length = 590

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 176 TLAKENMAKERYEPIYLEVWDDRSWR 99
           TL  +   K+  EPI +E++DD+SWR
Sbjct: 235 TLLDKANKKKLIEPILIELFDDKSWR 260


>sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein
           9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2
          Length = 1584

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 232 VNIAPSHSITFFKWLHIHV-L*QKKIWQRKDTSPSISKYGMIDHGDMASSIQRDVEIE 62
           V+  P HSI   K+ +I + + + KIW++        + G      +A+S QRDV+ +
Sbjct: 307 VDTIPKHSICNDKYFYIQMQICKDKIWKQNQNLSLFVREGASSRDILANSKQRDVDFK 364


>sp|P0C7V5|ZN812_HUMAN Putative zinc finger protein 812 OS=Homo
           sapiens GN=ZNF812 PE=5 SV=1
          Length = 454

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -3

Query: 383 PFTKSLDVQFMVDEGEAKSTQKSPPFDICLRVIDRRVNVISKSVAVL--VVKCQYRPFTL 210
           PF +   +  MV++  A S Q S  FD      D  V    +  A+L    KC YR   L
Sbjct: 18  PFEEKTKIGTMVEDYLANSYQDSVTFD------DVAVEFTPEEWALLDTTEKCLYRDVML 71

Query: 209 DNFFQVAAYTCTL 171
           +N+  +A+   T+
Sbjct: 72  ENYVNLASVEATV 84


>sp|Q6NGN2|IF2_CORDI Translation initiation factor IF-2
           OS=Corynebacterium diphtheriae GN=infB PE=3 SV=1
          Length = 953

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 410 ILGDSDAERPFTKSLDVQFMVDEGEAKSTQKSPP 309
           ++   D +R   +S D+QF  DEG  +   K PP
Sbjct: 419 VVSPEDEDRELLESFDLQFGEDEGTEEDLAKRPP 452


>sp|Q6FVD8|DNLI4_CANGA DNA ligase 4 OS=Candida glabrata GN=LIG4 PE=3
            SV=1
          Length = 946

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 356  FMVDEGEAKSTQKSPPFDICL---RVIDRRVNVISKSVAVLVVKCQYRPFTLDNFFQVAA 186
            FMVD    K T +    ++ +    V  RR+N I K ++  V+K  + P   D   +   
Sbjct: 869  FMVDAYGGKVTNELSSANLVIVVGAVTQRRINDIRKQISSEVIKQDHPPRIPDMVSEGWL 928

Query: 185  YTCTLAKENMAKERY 141
            Y C      +A++ Y
Sbjct: 929  YDCIKQNTQVAEDNY 943


>sp|Q7TSN4|PIGW_RAT Phosphatidylinositol-glycan biosynthesis class W
           protein OS=Rattus norvegicus GN=Pigw PE=1 SV=1
          Length = 502

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 168 KRKYGKGKIRAHLSRSMG*SIMEIWHLLSNGMWRLKIVKS 49
           +RKY +G    HL +S+      +W L+  GM RL I+KS
Sbjct: 186 RRKYTEGSRFNHLRKSL----YSVWPLVFLGMGRLVIIKS 221
tr_hit_id Q4UBX5
Definition tr|Q4UBX5|Q4UBX5_THEAN Putative uncharacterized protein OS=Theileria annulata
Align length 44
Score (bit) 33.1
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917554|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_C12.
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4UBX5|Q4UBX5_THEAN Putative uncharacterized protein OS=Theil...    33   7.0  

>tr|Q4UBX5|Q4UBX5_THEAN Putative uncharacterized protein
           OS=Theileria annulata GN=TA09490 PE=4 SV=1
          Length = 521

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 242 VVKCQYRPFTLDNFFQVAAYTCTLAKENMAKERYEPIYLEVWDD 111
           VV C  RP+  D  F +A Y       N+ + R+EP  +E++ D
Sbjct: 196 VVGCTKRPYLTDECFSIAIYKSEPHYNNVFQSRFEPFTIELFYD 239