NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917555
Clone id YMU001_000102_D01
Library
Length 383
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCTCCTCATCATCCGTGACGCAGTCCTGTGGAAAATTGACACCAAGTCATTAGGCAGCCG
ATTGCTGCTGTCCTAGCATAGCTGGCCTTGCGAGTTGCCACACTGCCAACAAGCTTTGTG
AAATTTTGTCTTGCATCCATTTGGATAGTGCAGCCATGCCTTGTCTTTGGCATAGCATAT
CATTGTCCTACACGTCATAATTTGCAGCACTATCTCTACAGGATTTGGACATCTTGTCGA
TGTTTTCTTGCTCACGCACTACTCTCACCTTGGCCACATAGCCATGTCATCAGTACTTGC
TCTATTCTATTGCCCTGCCCAAGCTAAACCGAAGCCTTGCTCACCAATGCTCATCTCGTC
ACACATGCTACAACTTGGAGCGC
■■Homology search results ■■ -
sp_hit_id O12157
Definition sp|O12157|GAG_HV192 Gag polyprotein OS=Human immunodeficiency virus type 1 (isolate 92BR025 group M subtype C)
Align length 69
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917555|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_D01.
         (383 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O12157|GAG_HV192 Gag polyprotein OS=Human immunodeficiency vi...    31   1.7  
sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficienc...    30   3.7  
sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency vi...    30   3.7  
sp|P12493|GAG_HV1N5 Gag polyprotein OS=Human immunodeficiency vi...    30   4.8  
sp|P39581|DLTA_BACSU D-alanine--poly(phosphoribitol) ligase subu...    30   4.8  
sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficienc...    29   6.3  
sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficienc...    29   6.3  
sp|Q74230|GAG_HV2EH Gag polyprotein OS=Human immunodeficiency vi...    29   6.3  
sp|O89939|GAG_HV1SE Gag polyprotein OS=Human immunodeficiency vi...    29   6.3  
sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficienc...    29   8.2  
sp|Q1A268|GAG_SIVMB Gag polyprotein OS=Simian immunodeficiency v...    29   8.2  
sp|P05887|GAG_HV1C4 Gag polyprotein OS=Human immunodeficiency vi...    29   8.2  

>sp|O12157|GAG_HV192 Gag polyprotein OS=Human immunodeficiency virus
           type 1 (isolate 92BR025 group M subtype C) GN=gag PE=3
           SV=3
          Length = 496

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -3

Query: 225 NPVEIVLQIMTC----RTMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQGQLC*DSSNR 58
           N   I++Q   C    RT+ C+   K   H    C+    K CW+CG  +G    D + R
Sbjct: 369 NNTNIMMQRSNCKGPKRTIKCFNCGKEG-HLARNCRAPRKKGCWKCG-KEGHQVKDCTER 426

Query: 57  LPNDLVSIF 31
             N L  I+
Sbjct: 427 QANFLGKIW 435


>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate 92BR025 group M subtype C)
           GN=gag-pol PE=1 SV=2
          Length = 1431

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = -3

Query: 225 NPVEIVLQIMTC----RTMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQGQLC*DSSNR 58
           N   I++Q   C    RT+ C+   K   H    C+    K CW+CG  +G    D + R
Sbjct: 369 NNTNIMMQRSNCKGPKRTIKCFNCGKEG-HLARNCRAPRKKGCWKCG-KEGHQVKDCTER 426

Query: 57  LPN 49
             N
Sbjct: 427 QAN 429


>sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency virus
           type 1 (isolate ARV2/SF2 group M subtype B) GN=gag PE=3
           SV=3
          Length = 502

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -3

Query: 255 VSKKTSTRCPNPVEIVLQIMTCR----TMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQ 88
           V  +  ++  NP  I++Q    R    T+ C+   K   H    C+    K CW+CG  +
Sbjct: 364 VLAEAMSQVTNPANIMMQRGNFRNQRKTVKCFNCGKEG-HIAKNCRAPRKKGCWRCGR-E 421

Query: 87  GQLC*DSSNRLPNDLVSIF 31
           G    D + R  N L  I+
Sbjct: 422 GHQMKDCTERQANFLGKIW 440


>sp|P12493|GAG_HV1N5 Gag polyprotein OS=Human immunodeficiency virus
           type 1 (isolate NY5 group M subtype B) GN=gag PE=1 SV=3
          Length = 500

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -3

Query: 255 VSKKTSTRCPNPVEIVLQIMTCR----TMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQ 88
           V  +  ++  NP  I++Q    R    T+ C+   K   H    C+    K CW+CG  +
Sbjct: 362 VLAEAMSQVTNPATIMIQKGNFRNQRKTVKCFNCGKEG-HIAKNCRAPRKKGCWKCGK-E 419

Query: 87  GQLC*DSSNRLPNDLVSIF 31
           G    D + R  N L  I+
Sbjct: 420 GHQMKDCTERQANFLGKIW 438


>sp|P39581|DLTA_BACSU D-alanine--poly(phosphoribitol) ligase subunit
           1 OS=Bacillus subtilis GN=dltA PE=1 SV=1
          Length = 503

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 16/76 (21%)
 Frame = +1

Query: 136 SIWIVQPCLVFGIAYHCPTR----------HNLQHYLYRIWTSCRCFLAHALLSP----- 270
           S+  + PCL  G   HC T+            L+     +WTS   F+   L+ P     
Sbjct: 198 SVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQD 257

Query: 271 -WPHSHVISTCSILLP 315
             PH+     C  +LP
Sbjct: 258 LLPHADTFMFCGEVLP 273


>sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 2 (isolate EHO subtype B) GN=gag-pol PE=3
           SV=3
          Length = 1464

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 249 KKTSTRCPNPVEIVLQIMTCRTMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQGQL 79
           K+  T   NP          RT+ C+   KA  H    CK    + CW+CG  QG +
Sbjct: 365 KEALTPSTNPFAAAQPRAGKRTVTCWNCGKAG-HTARQCKAPRRQGCWKCG-QQGHI 419


>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate ARV2/SF2 group M subtype B)
           GN=gag-pol PE=1 SV=3
          Length = 1437

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -3

Query: 255 VSKKTSTRCPNPVEIVLQIMTCR----TMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQ 88
           V  +  ++  NP  I++Q    R    T+ C+   K   H    C+    K CW+CG  +
Sbjct: 364 VLAEAMSQVTNPANIMMQRGNFRNQRKTVKCFNCGKEG-HIAKNCRAPRKKGCWRCGR-E 421

Query: 87  GQLC*DSSNRLPNDL 43
           G    D + R  N L
Sbjct: 422 GHQMKDCTERQANFL 436


>sp|Q74230|GAG_HV2EH Gag polyprotein OS=Human immunodeficiency virus
           type 2 (isolate EHO subtype B) GN=gag PE=3 SV=3
          Length = 519

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 249 KKTSTRCPNPVEIVLQIMTCRTMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQGQL 79
           K+  T   NP          RT+ C+   KA  H    CK    + CW+CG  QG +
Sbjct: 365 KEALTPSTNPFAAAQPRAGKRTVTCWNCGKAG-HTARQCKAPRRQGCWKCG-QQGHI 419


>sp|O89939|GAG_HV1SE Gag polyprotein OS=Human immunodeficiency virus
           type 1 (isolate SE6165 group M subtype G) GN=gag PE=3
           SV=3
          Length = 495

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 189 RTMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQGQLC*DSSNRLPNDLVSIFHRTASR 13
           RT+ C+   K   H    C+    K CW+CG  +G    D + R  N L  I+     R
Sbjct: 389 RTIKCFNCGKEG-HLARNCRAPRKKGCWKCGK-EGHQMKDCTERQANFLGKIWPSNKGR 445


>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate NY5 group M subtype B) GN=gag-pol
           PE=1 SV=3
          Length = 1435

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -3

Query: 255 VSKKTSTRCPNPVEIVLQIMTCR----TMICYAKDKAWLHYPNGCKTKFHKACWQCGNSQ 88
           V  +  ++  NP  I++Q    R    T+ C+   K   H    C+    K CW+CG  +
Sbjct: 362 VLAEAMSQVTNPATIMIQKGNFRNQRKTVKCFNCGKEG-HIAKNCRAPRKKGCWKCGK-E 419

Query: 87  GQLC*DSSNRLPNDL 43
           G    D + R  N L
Sbjct: 420 GHQMKDCTERQANFL 434
tr_hit_id B6B2G7
Definition tr|B6B2G7|B6B2G7_9RHOB Caax amino terminal protease family protein OS=Rhodobacterales bacterium HTCC2083
Align length 70
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917555|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_D01.
         (383 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6B2G7|B6B2G7_9RHOB Caax amino terminal protease family prote...    33   5.5  
tr|A2DW82|A2DW82_TRIVA Putative uncharacterized protein OS=Trich...    33   5.5  
tr|A6R267|A6R267_AJECN Protein dopey OS=Ajellomyces capsulata (s...    33   9.4  

>tr|B6B2G7|B6B2G7_9RHOB Caax amino terminal protease family protein
           OS=Rhodobacterales bacterium HTCC2083 GN=RB2083_283 PE=4
           SV=1
          Length = 303

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +1

Query: 121 KFCLASIWIVQPCLVFGIAYHCPTRHNLQHYLYRIWTSCRCFLAHAL------LSPWPHS 282
           +F   ++W+V P ++FG+A++ P  +    +L  IW S    +A  L      L P    
Sbjct: 184 RFAHPAVWMVIPSVLFGLAHYSPGTYGGNAWLVVIWASVFGMIAADLTARSGTLGPAIAV 243

Query: 283 HVISTCSILL 312
           H ++  S LL
Sbjct: 244 HFVTNVSALL 253


>tr|A2DW82|A2DW82_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_224590 PE=4 SV=1
          Length = 1300

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 109 TSFVKFCLASIWIVQPCLVFGIAYHCPTRHNLQHYLYRIWTSCRCFLAHALLSPWPH 279
           TSF++F + + W  +  +VF I      +H+   Y Y  W  C     H LL  + H
Sbjct: 165 TSFLEFFVCTFWKPKVFVVFSIL----DKHSCATYYYFYWVKCLMISVHILLVEYNH 217


>tr|A6R267|A6R267_AJECN Protein dopey OS=Ajellomyces capsulata (strain
            NAm1 / WU24) GN=HCAG_03725 PE=4 SV=1
          Length = 1788

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 187  PTRHNLQH-YLYRIWTSCRCFLAHALLSPWPHSHVI 291
            P+R +L    L  IW  C  FL   L +P+PH H++
Sbjct: 1284 PSRKSLDDDVLDEIWADCTTFLRDVLANPFPHRHIL 1319