BP917560 |
Clone id |
YMU001_000102_D07 |
Library |
YMU01 |
Length |
395 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000102_D07. |
Accession |
BP917560 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAATAAAATTCACGCGTACAAACGTATATGGAGATAGAGAGTTTCTGTTTGATTCCAATA GCTTATGTGAATGTGGACCATGGTACACAAGTCTGTGGAAATTGCACTCACAACTATGGG CAATTACAGCCCCACTTTGTGTGTGTGTGTGTGATAATTGTCGATTGCATGGGATAGCAT AACCCCATCAAACCACTGCATGGTGGAGGAGAGTATACAAAGCTGTGTAGGTGCCAAGAG CCCAAAAGAGCTTCAAAGTCCATCCGCAACCCATATTTTACCCCCACTCCTAAATTTCTT AGCCCAACTTACCTCTCCTATCCACACACAGGCATACCTCAACGTTCCCTTCGAATACTC GTGCACATGATAGATGCACCTACACACACACTGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8JZS9 |
Definition |
sp|Q8JZS9|RM48_MOUSE 39S ribosomal protein L48, mitochondrial OS=Mus musculus |
Align length |
75 |
Score (bit) |
30.8 |
E-value |
2.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917560|Adiantum capillus-veneris mRNA, clone: YMU001_000102_D07. (395 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8JZS9|RM48_MOUSE 39S ribosomal protein L48, mitochondrial OS... 31 2.2 sp|A2AG50|MA7D2_MOUSE MAP7 domain-containing protein 2 OS=Mus mu... 30 3.7 sp|Q8BJ66|KAZD1_MOUSE Kazal-type serine protease inhibitor domai... 30 3.7 sp|O09043|NAPSA_MOUSE Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1 30 4.9 sp|O47475|COX3_LOLBL Cytochrome c oxidase subunit 3 OS=Loligo bl... 30 4.9 sp|Q9SSG5|BORL3_ARATH Putative boron transporter-like protein 3 ... 30 4.9 sp|Q68SA9|ATS7_MOUSE A disintegrin and metalloproteinase with th... 25 6.0 sp|Q1EHB3|ATS7_RAT A disintegrin and metalloproteinase with thro... 25 6.0 sp|Q9RKB9|TRI2_STRCO Putative tricorn protease homolog 2 OS=Stre... 29 8.3 sp|Q8BGD7|NPAS4_MOUSE Neuronal PAS domain-containing protein 4 O... 29 8.3 sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 O... 29 8.3 sp|Q7SZQ0|MBOA7_DANRE Membrane-bound O-acyltransferase domain-co... 29 8.3
>sp|Q8JZS9|RM48_MOUSE 39S ribosomal protein L48, mitochondrial OS=Mus musculus GN=Mrpl48 PE=2 SV=1 Length = 211
Score = 30.8 bits (68), Expect = 2.2 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 15/75 (20%) Frame = +1
Query: 178 HNPIKPLHGGGEYTKLCRCQEPKRASKSIR---------------NPYFTPTPKFLSPTY 312 H KP HG G Y L + QEPK+ + N + T L+ +Y Sbjct: 46 HYKTKPTHGIGRYRHLVKVQEPKKKKAKVELRAINVGTDYEYGVLNIHLTAYDMSLAESY 105
Query: 313 LSYPHTGIPQRSLRI 357 Y H + S+++ Sbjct: 106 AQYVHRLCNRLSIKV 120
>sp|A2AG50|MA7D2_MOUSE MAP7 domain-containing protein 2 OS=Mus musculus GN=Map7d2 PE=1 SV=1 Length = 781
Score = 30.0 bits (66), Expect = 3.7 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 8/48 (16%) Frame = +1
Query: 205 GGEYTKLCRCQEPKRASKSIRNPY--------FTPTPKFLSPTYLSYP 324 GG + L RC+ P+ SK + +P + +PK PTYL P Sbjct: 311 GGHGSPLRRCEPPEDISKRLSSPVKSKITSKTYPQSPKTAKPTYLGSP 358
>sp|Q8BJ66|KAZD1_MOUSE Kazal-type serine protease inhibitor domain-containing protein 1 OS=Mus musculus GN=Kazald1 PE=1 SV=1 Length = 313
Score = 30.0 bits (66), Expect = 3.7 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Frame = +1
Query: 130 PHFVCVCVIIVDCMG*HNPIKPLHG--GGEYTKLCRCQEPKRASKSIRNPYFTPTPKFLS 303 P +CVC +PL G G Y ++CR QE RA P P Sbjct: 129 PEPLCVC----------RSQRPLCGSDGRTYAQICRLQEAARARLDANLTVVHPGPCESE 178
Query: 304 PTYLSYPH 327 P LS PH Sbjct: 179 PQILSQPH 186
>sp|O09043|NAPSA_MOUSE Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1 Length = 419
Score = 29.6 bits (65), Expect = 4.9 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = +1
Query: 178 HNPIKPLHGGGEYTKLCRCQEPKRASKSIRNPYFTPTPKFLSPTYLSYPHTGIPQRSLRI 357 H + PL+G + +L R S S NP F P KF++ Y G P ++ + Sbjct: 35 HRILNPLNGWEQLAEL------SRTSTSGGNPSFVPLSKFMNTQYFGTIGLGTPPQNFTV 88
Query: 358 L 360 + Sbjct: 89 V 89
>sp|O47475|COX3_LOLBL Cytochrome c oxidase subunit 3 OS=Loligo bleekeri GN=COIII PE=3 SV=1 Length = 259
Score = 29.6 bits (65), Expect = 4.9 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Frame = -3
Query: 372 YHVHEYSK----GTLRYACVWIGEVSWAKKFRSGGKIWVADGL*SSFGLLAPTQLCILSS 205 +H+ EYS G+L + +G SW F + G I + GL +L + Sbjct: 6 FHLVEYSPWPLTGSLGAMFLTVGLTSW---FHNHGFITMLLGL-----------FLVLMT 51
Query: 204 TMQWFDGVMLSHAIDNYHTHTHKVGL*LPIVVSAISTDLCTMVHIHISYWNQT 46 QW+ ++ YHT +G+ + +V+ I++++C +Y++ + Sbjct: 52 MFQWWRDIIRESTFQGYHTMKVSLGMRMGMVL-FITSEICFFFAFFWAYFHSS 103
>sp|Q9SSG5|BORL3_ARATH Putative boron transporter-like protein 3 OS=Arabidopsis thaliana GN=At1g74810 PE=3 SV=1 Length = 683
Score = 29.6 bits (65), Expect = 4.9 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -3
Query: 273 WVADGL*SSFGLLAPTQLCILSSTMQWFD-GVMLSHAIDNYHTHTHKVGL*LPIVVSAIS 97 W+A GL S FG+LAPT +S + G LSH + L V + S Sbjct: 31 WIA-GLRSGFGILAPTTYVFFASALPVIAFGEQLSHDTERS----------LSTVETLAS 79
Query: 96 TDLCTMVH 73 T LC ++H Sbjct: 80 TALCGVIH 87
>sp|Q68SA9|ATS7_MOUSE A disintegrin and metalloproteinase with thrombospondin motifs 7 OS=Mus musculus GN=Adamts7 PE=1 SV=2 Length = 1657
Score = 25.0 bits (53), Expect(2) = 6.0 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +1
Query: 202 GGGEYTKLCRCQEPKRASKSIR 267 GGGE +L C EP +S+R Sbjct: 1508 GGGEQQRLVTCPEPGLCEESLR 1529
Score = 23.9 bits (50), Expect(2) = 6.0 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +3
Query: 72 CGPWYTSLWK 101 C PWYTS W+ Sbjct: 1492 CLPWYTSSWR 1501
>sp|Q1EHB3|ATS7_RAT A disintegrin and metalloproteinase with thrombospondin motifs 7 OS=Rattus norvegicus GN=Adamts7 PE=1 SV=1 Length = 1595
Score = 25.0 bits (53), Expect(2) = 6.0 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +1
Query: 202 GGGEYTKLCRCQEPKRASKSIR 267 GGGE +L C EP +S+R Sbjct: 1446 GGGEQQRLVTCPEPGLCEESLR 1467
Score = 23.9 bits (50), Expect(2) = 6.0 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +3
Query: 72 CGPWYTSLWK 101 C PWYTS W+ Sbjct: 1430 CLPWYTSSWR 1439
>sp|Q9RKB9|TRI2_STRCO Putative tricorn protease homolog 2 OS=Streptomyces coelicolor GN=tri2 PE=3 SV=1 Length = 1171
Score = 28.9 bits (63), Expect = 8.3 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = +1
Query: 181 NPIKPLHGGGEYTKLCRCQEPKRASKSIRNPYFTPTPKFLSPTYLSYPHTGIPQRSLRIL 360 +P P GG+ T+L R + +R+ F+P T+L++ H GI + +I Sbjct: 490 SPGTPATAGGQVTELIRS-----VNGPVRDLAFSP-----DGTWLTWSHPGIGRTLRQIK 539
Query: 361 VHMIDAPTHTL 393 + ID P TL Sbjct: 540 MARIDGPEGTL 550
>sp|Q8BGD7|NPAS4_MOUSE Neuronal PAS domain-containing protein 4 OS=Mus musculus GN=Npas4 PE=1 SV=1 Length = 802
Score = 28.9 bits (63), Expect = 8.3 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +2
Query: 173 DSITPSNHCMVEESIQSCVGAKSPKELQSPSATHILPPLLNFLAQLTSPIHT 328 D +TP ++ + S A P+ L SP+ + PP F A L SP T Sbjct: 499 DQLTPCTSSFPDQLLPST--ATFPEPLGSPAHEQLTPPSTAFQAHLNSPSQT 548
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q7U214 |
Definition |
tr|Q7U214|Q7U214_MYCBO POSSIBLE LIPOPROTEIN PEPTIDASE LPQM OS=Mycobacterium bovis |
Align length |
26 |
Score (bit) |
32.7 |
E-value |
9.2 |
Report |
|