BP917562 |
Clone id |
YMU001_000102_D09 |
Library |
YMU01 |
Length |
507 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000102_D09. |
Accession |
BP917562 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL341Contig1 |
Sequence |
TTGAAAAGCTGTATACTTCAAAAATGGTGTGCTCTTTACACAGAGGGGTGGGCAATTTCA TGAACTTCATATTCCCATTGGCCTCAATTCAGCGGAGGATCTGTCACTCATCCAAAACTA CATTACCAACAACAGCATCATCATGCTCAGAGAAGGTTCTCGTGACTATTGTCATCAAAA CAACCAATCTCCTCCAGGATGCATGAGCAGAGCGGTACAGGCTGCATTCTGGAGAGGATG TCATCATCATCAGACTATGCCAGACCCTAAAAAGCTTGCAAGGTCTACTCTCGTCAGGTA TACCACTGTCATCCATACCTAGAAAGAGCCTCATAAAACAATACTTGCGGCTGCAGATGA CCCCTCCGGCAAGTGTCCACGACATCCTCATAGGTGCCAATAATCTTTACTGTCGTATCA TCAAACATCACCCATCTTCCAATGTCGTGATTGAAAGCAAAACAATGATAATGTTGACCA TAGTAACAGATCACAGAAATAAGCCGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q70EK8 |
Definition |
sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens |
Align length |
58 |
Score (bit) |
65.9 |
E-value |
1.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917562|Adiantum capillus-veneris mRNA, clone: YMU001_000102_D09. (507 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydro... 66 1e-10 sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrola... 64 4e-10 sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydro... 64 4e-10 sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydro... 64 4e-10 sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydro... 64 4e-10 sp|Q14694|UBP10_HUMAN Ubiquitin carboxyl-terminal hydrolase 10 O... 35 0.20 sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 O... 33 0.58 sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 O... 33 0.58 sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 O... 32 1.3 sp|P52479|UBP10_MOUSE Ubiquitin carboxyl-terminal hydrolase 10 O... 32 1.3 sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 O... 31 2.9 sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=... 31 3.8 sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=... 30 6.5 sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=... 30 6.5 sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 O... 30 6.5 sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 O... 30 6.5 sp|Q57813|Y367_METJA Probable integrase/recombinase protein MJ03... 30 8.4 sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=... 30 8.4 sp|Q9BXU7|UBP26_HUMAN Ubiquitin carboxyl-terminal hydrolase 26 O... 30 8.4
>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2 Length = 1073
Score = 65.9 bits (159), Expect = 1e-10 Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGT-YEDVVDTCRRGHLQPQVLFY 333 L+ +ICY QHY FAF+ +WV FDD VK IGT ++DVV C R H QP +LFY Sbjct: 291 LVGMICYTSQHYCAFAFHTKSSKWVFFDDANVKEIGTRWKDVVSKCIRCHFQPLLLFY 348
>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2 Length = 1588
Score = 63.9 bits (154), Expect = 4e-10 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIG-TYEDVVDTCRRGHLQPQVLFY 333 L+ +ICYYG+HY F F I +W+ FDD VK IG ++DVV C +GH QP +L Y Sbjct: 292 LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLY 349
>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2 Length = 1588
Score = 63.9 bits (154), Expect = 4e-10 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIG-TYEDVVDTCRRGHLQPQVLFY 333 L+ +ICYYG+HY F F I +W+ FDD VK IG ++DVV C +GH QP +L Y Sbjct: 292 LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLY 349
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4 Length = 1684
Score = 63.9 bits (154), Expect = 4e-10 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIG-TYEDVVDTCRRGHLQPQVLFY 333 L+ +ICYYG+HY F F I +W+ FDD VK IG ++DVV C +GH QP +L Y Sbjct: 292 LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLY 349
>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2 Length = 1069
Score = 63.9 bits (154), Expect = 4e-10 Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGT-YEDVVDTCRRGHLQPQVLFY 333 L+ +ICY +HY FAF+ +WV FDD VK +GT ++DVV C R HLQP +LFY Sbjct: 291 LVGMICYTSRHYCAFAFHTKSSKWVFFDDAHVKEMGTRWKDVVSKCIRCHLQPLLLFY 348
>sp|Q14694|UBP10_HUMAN Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10 PE=1 SV=2 Length = 798
Score = 35.0 bits (79), Expect = 0.20 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Frame = -2
Query: 506 RLISVICYYGQ-----HYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRR 363 RL +V+ ++G HY F + W+ DD TVK+I Y+ V T R Sbjct: 733 RLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPTAER 785
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15 PE=2 SV=1 Length = 981
Score = 33.5 bits (75), Expect = 0.58 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%) Frame = -2
Query: 503 LISVICYYGQ----HYHCFAFNHDIGRWVMFDDTTV 408 LI+V +YG HY FA N D G+W FDD++V Sbjct: 877 LIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSV 912
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3 Length = 981
Score = 33.5 bits (75), Expect = 0.58 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%) Frame = -2
Query: 503 LISVICYYGQ----HYHCFAFNHDIGRWVMFDDTTV 408 LI+V +YG HY FA N D G+W FDD++V Sbjct: 877 LIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSV 912
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=2 Length = 920
Score = 32.3 bits (72), Expect = 1.3 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = -2
Query: 503 LISVICYYGQ----HYHCFAFNHDIGRWVMFDDTTV 408 LI+V +YG HY FA N D G+W FDD +V Sbjct: 831 LIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSV 866
>sp|P52479|UBP10_MOUSE Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10 PE=1 SV=2 Length = 792
Score = 32.3 bits (72), Expect = 1.3 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2
Query: 506 RLISVICYYGQ-----HYHCFAFNHDIGRWVMFDDTTVKIIGTYEDV 381 RL +V+ ++G HY F + W+ DD TVK+I Y+ V Sbjct: 727 RLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVV 773
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7U8 |
Definition |
tr|A9S7U8|A9S7U8_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
59 |
Score (bit) |
112.0 |
E-value |
1.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917562|Adiantum capillus-veneris mRNA, clone: YMU001_000102_D09. (507 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S7U8|A9S7U8_PHYPA Predicted protein (Fragment) OS=Physcomit... 112 1e-23 tr|A7QI28|A7QI28_VITVI Chromosome chr17 scaffold_101, whole geno... 102 8e-21 tr|Q0WVL1|Q0WVL1_ARATH Putative uncharacterized protein At3g4789... 99 2e-19 tr|Q10RB2|Q10RB2_ORYSJ Ubiquitin carboxyl-terminal hydrolase fam... 96 7e-19 tr|Q0DUV5|Q0DUV5_ORYSJ Os03g0165600 protein (Fragment) OS=Oryza ... 96 7e-19 tr|B8ANX8|B8ANX8_ORYSI Putative uncharacterized protein OS=Oryza... 96 7e-19 tr|A3AEG8|A3AEG8_ORYSJ Putative uncharacterized protein OS=Oryza... 96 7e-19 tr|B4FZF6|B4FZF6_MAIZE Putative uncharacterized protein OS=Zea m... 95 2e-18 tr|Q9SU53|Q9SU53_ARATH Putative uncharacterized protein T17F15.2... 94 4e-18 tr|A1A6G4|A1A6G4_ARATH At3g47900 OS=Arabidopsis thaliana PE=2 SV=1 94 4e-18 tr|B4FHF4|B4FHF4_MAIZE Putative uncharacterized protein OS=Zea m... 94 5e-18 tr|B6PRR6|B6PRR6_BRAFL Putative uncharacterized protein (Fragmen... 66 1e-09 tr|B7PUR5|B7PUR5_IXOSC Ubiquitin specific proteinase, putative (... 65 1e-09 tr|Q3USD9|Q3USD9_MOUSE Putative uncharacterized protein (Fragmen... 64 4e-09 tr|A2RT25|A2RT25_MOUSE Ubiquitin specific peptidase 53 OS=Mus mu... 64 4e-09 tr|B7Z7X1|B7Z7X1_HUMAN cDNA FLJ58710, highly similar to Rattus n... 64 4e-09 tr|Q4SAP0|Q4SAP0_TETNG Chromosome undetermined SCAF14681, whole ... 63 7e-09 tr|A8IKA4|A8IKA4_CHLRE Predicted protein (Fragment) OS=Chlamydom... 63 7e-09 tr|Q9STS5|Q9STS5_ARATH Putative uncharacterized protein T23J7.21... 62 1e-08 tr|B2GU65|B2GU65_XENTR LOC100158512 protein (Fragment) OS=Xenopu... 61 3e-08 tr|B0WE11|B0WE11_CULQU Ubiquitin specific proteinase OS=Culex qu... 61 3e-08 tr|Q7K7E6|Q7K7E6_DROME EG:EG0002.3 protein OS=Drosophila melanog... 60 5e-08 tr|Q1W9Q0|Q1W9Q0_DROME Echinus splice form 1 OS=Drosophila melan... 60 5e-08 tr|Q1W9P9|Q1W9P9_DROME Echinus, isoform C OS=Drosophila melanoga... 60 5e-08 tr|Q17J33|Q17J33_AEDAE Ubiquitin specific proteinase (Fragment) ... 60 5e-08 tr|O77283|O77283_DROME Echinus, isoform A OS=Drosophila melanoga... 60 5e-08 tr|B4R477|B4R477_DROSI Anon-072 OS=Drosophila simulans GN=anon-0... 60 5e-08 tr|B4Q0H8|B4Q0H8_DROYA GE16315 OS=Drosophila yakuba GN=GE16315 P... 60 5e-08 tr|B4NDF1|B4NDF1_DROWI GK10224 OS=Drosophila willistoni GN=GK102... 60 5e-08 tr|B4MAP5|B4MAP5_DROVI GJ15954 OS=Drosophila virilis GN=GJ15954 ... 60 5e-08
>tr|A9S7U8|A9S7U8_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_10132 PE=4 SV=1 Length = 1559
Score = 112 bits (279), Expect = 1e-23 Identities = 45/59 (76%), Positives = 54/59 (91%) Frame = -2
Query: 506 RLISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYE 330 RL+SV+CYYG HYHCFA+N ++GRWVMFDD+TVK+IG ++DV TCRRGHLQPQVLFYE Sbjct: 1501 RLVSVVCYYGLHYHCFAYNQELGRWVMFDDSTVKVIGEWKDVASTCRRGHLQPQVLFYE 1559
>tr|A7QI28|A7QI28_VITVI Chromosome chr17 scaffold_101, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000069001 PE=4 SV=1 Length = 1638
Score = 102 bits (255), Expect = 8e-21 Identities = 40/61 (65%), Positives = 55/61 (90%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYEAL 324 L+SV+CYYGQHYHCFA++H+ RWVM+DD TVK+IG++++V+ C RGHLQPQVLF+EA+ Sbjct: 1578 LVSVVCYYGQHYHCFAYSHEHERWVMYDDKTVKVIGSWDNVLTMCERGHLQPQVLFFEAV 1637
Query: 323 S 321 + Sbjct: 1638 N 1638
>tr|Q0WVL1|Q0WVL1_ARATH Putative uncharacterized protein At3g47890 (Fragment) OS=Arabidopsis thaliana GN=At3g47890 PE=2 SV=1 Length = 783
Score = 98.6 bits (244), Expect = 2e-19 Identities = 37/58 (63%), Positives = 50/58 (86%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYE 330 L+SV+CYYGQHYHCFA++H+ +W+M+DD VK+IG++ DV+ C+RGHLQPQVL YE Sbjct: 723 LVSVVCYYGQHYHCFAYSHEHDQWIMYDDQNVKVIGSWSDVLSMCKRGHLQPQVLLYE 780
>tr|Q10RB2|Q10RB2_ORYSJ Ubiquitin carboxyl-terminal hydrolase family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g06950 PE=4 SV=1 Length = 1579
Score = 96.3 bits (238), Expect = 7e-19 Identities = 39/59 (66%), Positives = 51/59 (86%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYEA 327 L+SV+CYYGQHYHCFAF G+WVM+DD TVK++G ++DV+ C++GHLQPQVLF+EA Sbjct: 1521 LVSVVCYYGQHYHCFAFED--GQWVMYDDQTVKVVGNWDDVLVMCKKGHLQPQVLFFEA 1577
>tr|Q0DUV5|Q0DUV5_ORYSJ Os03g0165600 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os03g0165600 PE=4 SV=1 Length = 505
Score = 96.3 bits (238), Expect = 7e-19 Identities = 39/59 (66%), Positives = 51/59 (86%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYEA 327 L+SV+CYYGQHYHCFAF G+WVM+DD TVK++G ++DV+ C++GHLQPQVLF+EA Sbjct: 447 LVSVVCYYGQHYHCFAFED--GQWVMYDDQTVKVVGNWDDVLVMCKKGHLQPQVLFFEA 503
>tr|B8ANX8|B8ANX8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10153 PE=4 SV=1 Length = 1598
Score = 96.3 bits (238), Expect = 7e-19 Identities = 39/59 (66%), Positives = 51/59 (86%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYEA 327 L+SV+CYYGQHYHCFAF G+WVM+DD TVK++G ++DV+ C++GHLQPQVLF+EA Sbjct: 1540 LVSVVCYYGQHYHCFAFED--GQWVMYDDQTVKVVGNWDDVLVMCKKGHLQPQVLFFEA 1596
>tr|A3AEG8|A3AEG8_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_009190 PE=4 SV=1 Length = 1579
Score = 96.3 bits (238), Expect = 7e-19 Identities = 39/59 (66%), Positives = 51/59 (86%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYEA 327 L+SV+CYYGQHYHCFAF G+WVM+DD TVK++G ++DV+ C++GHLQPQVLF+EA Sbjct: 1521 LVSVVCYYGQHYHCFAFED--GQWVMYDDQTVKVVGNWDDVLVMCKKGHLQPQVLFFEA 1577
>tr|B4FZF6|B4FZF6_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 238
Score = 94.7 bits (234), Expect = 2e-18 Identities = 39/59 (66%), Positives = 50/59 (84%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYEA 327 L+SV+CYYGQHYHCFAF GRWVM+DD TVK++G++ DV+ C +GHLQPQVLF+E+ Sbjct: 180 LVSVVCYYGQHYHCFAFKD--GRWVMYDDQTVKVVGSWGDVLVMCEKGHLQPQVLFFES 236
>tr|Q9SU53|Q9SU53_ARATH Putative uncharacterized protein T17F15.230 OS=Arabidopsis thaliana GN=T17F15.230 PE=4 SV=1 Length = 365
Score = 94.0 bits (232), Expect = 4e-18 Identities = 37/58 (63%), Positives = 48/58 (82%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYE 330 L+SV+CYYGQHYHCFA + + +W+M+DD TVK+IG++ DV+ C RGHLQPQVL YE Sbjct: 306 LVSVVCYYGQHYHCFAHSREHDQWIMYDDKTVKVIGSWIDVLSMCERGHLQPQVLLYE 363
>tr|A1A6G4|A1A6G4_ARATH At3g47900 OS=Arabidopsis thaliana PE=2 SV=1 Length = 367
Score = 94.0 bits (232), Expect = 4e-18 Identities = 37/58 (63%), Positives = 48/58 (82%) Frame = -2
Query: 503 LISVICYYGQHYHCFAFNHDIGRWVMFDDTTVKIIGTYEDVVDTCRRGHLQPQVLFYE 330 L+SV+CYYGQHYHCFA + + +W+M+DD TVK+IG++ DV+ C RGHLQPQVL YE Sbjct: 308 LVSVVCYYGQHYHCFAHSREHDQWIMYDDKTVKVIGSWIDVLSMCERGHLQPQVLLYE 365
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