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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917563
Clone id YMU001_000102_D10
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGCTTTACTTCTTTTCAAACGCCCTTCCATGTGCTGGTAGAGACTCCATAGGCGCTCCC
ATATATACACATAGTTTGACCAAAACCCATCCAAATTGAGCCCAATTTGAAAACCCACAA
AGTTCAGCAAAAAACAAAAAAAACATGATGATTTTTTTTCCCCTTTTGCATATGTTCAAG
CAAGGAATCGCAGCGCATAGTCTACCCTCGACTCACTGTACCACAAGGAACTACACATAG
CATGGCTACTATACCTCAAACCAAGATGAAGAGAGGTCAATACGTAGAGCTAAGAACCCA
CTTTCATCCACCCATCAAGGAGAGACACACTCTCAACTCACCACATCAAAATCTTGTAAT
GCAAGATTGGGGGACGAGTACACCAAAACCCCCACCCTTCATCTAGGTTGGAGCAACACA
AAGTTTCTTCTTCATA
■■Homology search results ■■ -
sp_hit_id P38250
Definition sp|P38250|IST2_YEAST Increased sodium tolerance protein 2 OS=Saccharomyces cerevisiae
Align length 77
Score (bit) 32.3
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917563|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_D10.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38250|IST2_YEAST Increased sodium tolerance protein 2 OS=Sac...    32   0.89 
sp|P15314|IRF1_MOUSE Interferon regulatory factor 1 OS=Mus muscu...    31   2.6  
sp|Q49V55|RS12_STAS1 30S ribosomal protein S12 OS=Staphylococcus...    30   4.4  
sp|P0A0G9|RS12_STAAW 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|A8YZP3|RS12_STAAT 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|Q6GBU2|RS12_STAAS 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|Q6GJC3|RS12_STAAR 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|P0A0G8|RS12_STAAN 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|P0A0G7|RS12_STAAM 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|A6QEJ7|RS12_STAAE 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|Q2YSB6|RS12_STAAB 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|A5IQ99|RS12_STAA9 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|P0A0H0|RS12_STAA8 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|Q2FJ95|RS12_STAA3 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|A6TZ22|RS12_STAA2 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|A7WYX1|RS12_STAA1 30S ribosomal protein S12 OS=Staphylococcus...    30   5.7  
sp|O74398|YOCC_SCHPO LIM domain-containing protein C4F6.12 OS=Sc...    29   7.5  
sp|Q07938|MEU1_YEAST Multicopy enhancer of UAS2 OS=Saccharomyces...    29   7.5  
sp|O83575|Y564_TREPA Uncharacterized protein TP_0564 OS=Treponem...    29   9.8  
sp|Q7VRQ7|UNG_BLOFL Uracil-DNA glycosylase OS=Blochmannia florid...    29   9.8  
sp|Q9JKU1|TR119_RAT Taste receptor type 2 member 119 OS=Rattus n...    29   9.8  

>sp|P38250|IST2_YEAST Increased sodium tolerance protein 2
           OS=Saccharomyces cerevisiae GN=IST2 PE=1 SV=1
          Length = 946

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 21/77 (27%), Positives = 40/77 (51%)
 Frame = +1

Query: 121 SSAKNKKNMMIFFPLLHMFKQGIAAHSLPSTHCTTRNYT*HGYYTSNQDEERSIRRAKNP 300
           + +  K+N ++  P +  +  G+A  +LP T  T++NY     Y    ++ +SIR AK+ 
Sbjct: 712 TESTEKRNSLVKVPTVGSY--GVAGATLPETIPTSKNY-----YLRFDEDGKSIRDAKSS 764

Query: 301 LSSTHQGETHSQLTTSK 351
             S++    ++  T SK
Sbjct: 765 AESSNATNNNTLGTESK 781


>sp|P15314|IRF1_MOUSE Interferon regulatory factor 1 OS=Mus musculus
           GN=Irf1 PE=1 SV=1
          Length = 329

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 175 FKQGIAAHSLPSTHCTTRNYT*HGYYTSNQDEERSIRRAKNP-LSSTHQGETHSQL 339
           F  G+++ +LP  H +   YT  GY   + D ER I  A +P + S+   E H Q+
Sbjct: 148 FSDGLSSSTLPDDHSS---YTTQGYLGQDLDMERDITPALSPCVVSSSLSEWHMQM 200


>sp|Q49V55|RS12_STAS1 30S ribosomal protein S12 OS=Staphylococcus
           saprophyticus subsp. saprophyticus (strain ATCC 15305 /
           DSM 20229) GN=rpsL PE=3 SV=1
          Length = 137

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 QTKMKRGQYVELRTHFHPPIKERHTLNSPHQNLVMQDWGTSTPKPP 394
           Q+K K+     L  +F+   K+   LNSP +  V    GT TPK P
Sbjct: 13  QSKSKKSDSPALNRNFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKP 58


>sp|P0A0G9|RS12_STAAW 30S ribosomal protein S12 OS=Staphylococcus
           aureus (strain MW2) GN=rpsL PE=3 SV=1
          Length = 137

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 QTKMKRGQYVELRTHFHPPIKERHTLNSPHQNLVMQDWGTSTPKPP 394
           Q+K+K+     L   F+   K+   LNSP +  V    GT TPK P
Sbjct: 13  QSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKP 58


>sp|A8YZP3|RS12_STAAT 30S ribosomal protein S12 OS=Staphylococcus
           aureus (strain USA300 / TCH1516) GN=rpsL PE=3 SV=1
          Length = 137

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 QTKMKRGQYVELRTHFHPPIKERHTLNSPHQNLVMQDWGTSTPKPP 394
           Q+K+K+     L   F+   K+   LNSP +  V    GT TPK P
Sbjct: 13  QSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKP 58


>sp|Q6GBU2|RS12_STAAS 30S ribosomal protein S12 OS=Staphylococcus
           aureus (strain MSSA476) GN=rpsL PE=3 SV=1
          Length = 137

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 QTKMKRGQYVELRTHFHPPIKERHTLNSPHQNLVMQDWGTSTPKPP 394
           Q+K+K+     L   F+   K+   LNSP +  V    GT TPK P
Sbjct: 13  QSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKP 58


>sp|Q6GJC3|RS12_STAAR 30S ribosomal protein S12 OS=Staphylococcus
           aureus (strain MRSA252) GN=rpsL PE=3 SV=1
          Length = 137

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 QTKMKRGQYVELRTHFHPPIKERHTLNSPHQNLVMQDWGTSTPKPP 394
           Q+K+K+     L   F+   K+   LNSP +  V    GT TPK P
Sbjct: 13  QSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKP 58


>sp|P0A0G8|RS12_STAAN 30S ribosomal protein S12 OS=Staphylococcus
           aureus (strain N315) GN=rpsL PE=1 SV=1
          Length = 137

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 QTKMKRGQYVELRTHFHPPIKERHTLNSPHQNLVMQDWGTSTPKPP 394
           Q+K+K+     L   F+   K+   LNSP +  V    GT TPK P
Sbjct: 13  QSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKP 58


>sp|P0A0G7|RS12_STAAM 30S ribosomal protein S12 OS=Staphylococcus
           aureus (strain Mu50 / ATCC 700699) GN=rpsL PE=3 SV=1
          Length = 137

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 QTKMKRGQYVELRTHFHPPIKERHTLNSPHQNLVMQDWGTSTPKPP 394
           Q+K+K+     L   F+   K+   LNSP +  V    GT TPK P
Sbjct: 13  QSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKP 58


>sp|A6QEJ7|RS12_STAAE 30S ribosomal protein S12 OS=Staphylococcus
           aureus (strain Newman) GN=rpsL PE=3 SV=1
          Length = 137

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 QTKMKRGQYVELRTHFHPPIKERHTLNSPHQNLVMQDWGTSTPKPP 394
           Q+K+K+     L   F+   K+   LNSP +  V    GT TPK P
Sbjct: 13  QSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKP 58
tr_hit_id Q9W6T6
Definition tr|Q9W6T6|Q9W6T6_DANRE Patched-2 protein OS=Danio rerio
Align length 75
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917563|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_D10.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9W6T6|Q9W6T6_DANRE Patched-2 protein OS=Danio rerio GN=ptc2 ...    35   1.4  
tr|Q4DPI2|Q4DPI2_TRYCR Putative uncharacterized protein OS=Trypa...    35   1.4  
tr|A8NIA6|A8NIA6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   1.4  
tr|B0UXP5|B0UXP5_DANRE Patched 2 (Fragment) OS=Danio rerio GN=pt...    35   2.4  
tr|B0X4W9|B0X4W9_CULQU Putative uncharacterized protein OS=Culex...    34   4.1  
tr|B4J405|B4J405_DROGR GH21524 OS=Drosophila grimshawi GN=GH2152...    33   5.4  
tr|A9BH61|A9BH61_PETMO Putative uncharacterized protein OS=Petro...    33   9.2  

>tr|Q9W6T6|Q9W6T6_DANRE Patched-2 protein OS=Danio rerio GN=ptc2
           PE=2 SV=1
          Length = 1243

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 176 SSKESQRIVYPRLTVPQGTTHSMATIPQTKMKRGQYVELRTHFHPPIKERHTLNSPHQNL 355
           SS +S R   P    P  ++HS A   Q  M+    V+LRT + P  +  +T   PH ++
Sbjct: 623 SSADSSRYSPP----PSYSSHSFAQHTQITMQ--STVQLRTEYDPRTQAYYTTGEPHSHI 676

Query: 356 VMQDWGTST-PKPPP 397
            +Q +  +T P P P
Sbjct: 677 SVQPYAPNTNPNPNP 691


>tr|Q4DPI2|Q4DPI2_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506513.180 PE=4 SV=1
          Length = 578

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 253 TSNQDEERSIRRAKNPLSSTHQGETHSQLTTSKSCNARLGDEYTKTPTLHL 405
           T   D +  +      L   H GE  SQ++ S   NA + D+  KTPT H+
Sbjct: 333 TGQTDAKPGVVGGNGELKFPHVGEQSSQMSVSSEINASVNDKMLKTPTSHV 383


>tr|A8NIA6|A8NIA6_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_01628 PE=4
           SV=1
          Length = 428

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +1

Query: 118 QSSAKNKKNMMIFFPLLHMFKQGIAAH-SLPSTHCTTRNYT*HGYYTSNQDEERSIRRAK 294
           Q+S  ++K  +   PL  +     AAH SLPS   TT   T H + TS      +I  + 
Sbjct: 302 QTSPLSEKQTLSSSPLSPLS----AAHWSLPSASTTTTTTTSHSHSTSKSTNPLTILTSS 357

Query: 295 NPLSSTHQGETHSQLTTSKSCNARLGDEYTKTP 393
            PL  T    TH   T S   N ++  +  K P
Sbjct: 358 LPLGLTPSKSTHGSTTPSMWNNGKVFSKGGKVP 390


>tr|B0UXP5|B0UXP5_DANRE Patched 2 (Fragment) OS=Danio rerio GN=ptc2
           PE=4 SV=1
          Length = 1354

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 176 SSKESQRIVYPRLTVPQGTTHSMATIPQTKMKRGQYVELRTHFHPPIKERHTLNSPHQNL 355
           SS +S R   P    P  ++HS A   Q  M+    V+LRT + P  +  +T   PH ++
Sbjct: 502 SSADSSRYSPP----PSYSSHSFAQHTQITMQ--STVQLRTEYDPRTQAYYTTAEPHSHI 555

Query: 356 VMQDWGTST-PKPPP 397
            +Q +  +T P P P
Sbjct: 556 SVQPYAPNTNPNPNP 570


>tr|B0X4W9|B0X4W9_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ014135 PE=4 SV=1
          Length = 456

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
 Frame = +1

Query: 103 QFENPQSSAKNKKNMMIFFPLLHMFKQGIAAHSLPSTHCTTRNYT*HGYYTSNQDEERSI 282
           Q  + +S+ K+K N     P+L    Q +  H         +    HG+    Q +++S 
Sbjct: 114 QHSSSRSAKKSKPNSHESQPVLQFHHQQVLPHVPQHQQQQQQQSNQHGHQQQQQHQQQSA 173

Query: 283 RRAKNPLSSTHQGETHS--QLTTSKSCNARLGDEYTKTPT 396
               NPL+ TH   T    QL T  S +       T  PT
Sbjct: 174 TPTTNPLTLTHYAHTIKVPQLNTIISNSNSTAATTTNAPT 213


>tr|B4J405|B4J405_DROGR GH21524 OS=Drosophila grimshawi GN=GH21524
            PE=4 SV=1
          Length = 1361

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
 Frame = +1

Query: 34   AGRDSIGAPIYTHSLTK--THP----N*AQFENPQSSAKNKKNMMIFFPLLHMFKQGIAA 195
            AG  S+  P+ THS T+  THP    + A   +P S   +KK             +G+  
Sbjct: 1109 AGDCSLNTPLSTHSATQPATHPVSILSGASSSSPMSGEPSKK-------------KGVRF 1155

Query: 196  HSLPSTHCTTRNYT*HGYYTSNQDEERSIRRAKN 297
              +P T   +R+Y+ +G  TS  + ER   R ++
Sbjct: 1156 EGIPDTLPRSRSYSGNGAGTSGGERERDRDRDRD 1189


>tr|A9BH61|A9BH61_PETMO Putative uncharacterized protein
           OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
           GN=Pmob_0557 PE=3 SV=1
          Length = 438

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 172 YAKGEKKSSCFFCFLLNFVGFQIGLNLDGFWSNYVYIWERLWSLYQHMEGRLKRSKA 2
           Y KGEK+      F  N++G++ G N   F  +Y Y + + ++LY   E     SK+
Sbjct: 305 YYKGEKR---IIDFTDNYIGYKYGENTVSFLVDYNYTYNKWFNLYSSFETVFSGSKS 358