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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917570
Clone id YMU001_000102_E06
Library
Length 268
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATTCTCTTTTATCAAATTCTCCTCCATAGGTTAATAGGTTAACGACATTTTGAGACCAC
TTCGGTATCATTTCTATGTTGAACAAGTACGTGTCTGGCATGTCGTCATCTACTCCTATA
GGGTCTTCTCCATTCGTCAATCGCGAAAGATGATCAGCTCTAAGATGTGTTTTTCCTTTC
TTTACTACTACCGTGAATTCGAACTCCAATAAGATAATGAACCATCTCACTATTCTTCCG
GTATTGCATGGTTTATTCACTAGGTAGA
■■Homology search results ■■ -
sp_hit_id Q9UR07
Definition sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe
Align length 70
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917570|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_E06.
         (268 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot...    34   0.20 
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot...    34   0.20 
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot...    34   0.20 
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra...    31   1.7  
sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf...    29   8.5  
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra...    29   8.5  

>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
            type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
          Length = 1333

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 236  RIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGEDPIGVD-DDMPDTYLFNIEMIPK 60
            R+ RW + L +F F +  + G  +  AD LSR+ +  +PI  D +D    ++  I +   
Sbjct: 800  RLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859

Query: 59   WSQNVVNLLT 30
            +   VV   T
Sbjct: 860  FKNQVVTEYT 869


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
            type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
          Length = 1333

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 236  RIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGEDPIGVD-DDMPDTYLFNIEMIPK 60
            R+ RW + L +F F +  + G  +  AD LSR+ +  +PI  D +D    ++  I +   
Sbjct: 800  RLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859

Query: 59   WSQNVVNLLT 30
            +   VV   T
Sbjct: 860  FKNQVVTEYT 869


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
            type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
          Length = 1333

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 236  RIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGEDPIGVD-DDMPDTYLFNIEMIPK 60
            R+ RW + L +F F +  + G  +  AD LSR+ +  +PI  D +D    ++  I +   
Sbjct: 800  RLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859

Query: 59   WSQNVVNLLT 30
            +   VV   T
Sbjct: 860  FKNQVVTEYT 869


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
           transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1058

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 236 RIVRWFIILLEFEFTVVVKKGKTHLRADHLSRL 138
           ++ RW + L EF+F +   KGK +  AD LSR+
Sbjct: 592 KLTRWRVKLSEFDFDIKYIKGKENCVADALSRI 624


>sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf
           curling virus GN=ORF V PE=3 SV=1
          Length = 643

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 245 NTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSR 141
           N GR+VRW +  L++   V   KG+ +  AD L+R
Sbjct: 604 NQGRLVRWQLEFLQYPARVEYIKGEKNSLADTLTR 638


>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from
           transposon 412 OS=Drosophila melanogaster GN=POL PE=4
           SV=1
          Length = 1237

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 266 YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLT 135
           YL +    + ++ R  + L E+ FTV   KGK +  AD LSR+T
Sbjct: 693 YLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRIT 736
tr_hit_id Q0ZCD0
Definition tr|Q0ZCD0|Q0ZCD0_POPTR Integrase OS=Populus trichocarpa
Align length 83
Score (bit) 67.4
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917570|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_E06.
         (268 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0ZCD0|Q0ZCD0_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1      67   3e-10
tr|Q0ZCC8|Q0ZCC8_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1      65   2e-09
tr|Q0ZCB7|Q0ZCB7_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1      64   4e-09
tr|Q0ZCD1|Q0ZCD1_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1      62   1e-08
tr|Q0ZCC0|Q0ZCC0_POPTR Gag protein OS=Populus trichocarpa PE=2 SV=1    62   1e-08
tr|A5B5E9|A5B5E9_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5BLH3|A5BLH3_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5AZ88|A5AZ88_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5AP17|A5AP17_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5C647|A5C647_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5C562|A5C562_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5BDP7|A5BDP7_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5B4W9|A5B4W9_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5AYI6|A5AYI6_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5ATF8|A5ATF8_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5ASA2|A5ASA2_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5AH79|A5AH79_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5ADK2|A5ADK2_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5BVW2|A5BVW2_VITVI Putative uncharacterized protein OS=Vitis...    60   4e-08
tr|A5BQC4|A5BQC4_VITVI Putative uncharacterized protein OS=Vitis...    60   4e-08
tr|A5BG10|A5BG10_VITVI Putative uncharacterized protein (Fragmen...    60   4e-08
tr|A5BI69|A5BI69_VITVI Putative uncharacterized protein OS=Vitis...    60   5e-08
tr|A5BDW3|A5BDW3_VITVI Putative uncharacterized protein OS=Vitis...    60   5e-08
tr|A5BCK1|A5BCK1_VITVI Putative uncharacterized protein OS=Vitis...    60   5e-08
tr|A5ADC2|A5ADC2_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5C195|A5C195_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08
tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08
tr|A5BW22|A5BW22_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08
tr|A5BRS7|A5BRS7_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08
tr|A5BNG4|A5BNG4_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08

>tr|Q0ZCD0|Q0ZCD0_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
          Length = 1139

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
 Frame = -3

Query: 266 YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLT--NGEDPIGVDDDMPD 93
           YL++K  +  R+VRW ++L EF+ T+  KKG  ++ ADHLSRLT  +  D   +DD  PD
Sbjct: 718 YLLSKKDSKARLVRWILLLQEFDITIKDKKGTENVVADHLSRLTTDSRSDITPIDDYFPD 777

Query: 92  TYLFNIEMIPKWSQNVVNLLTYG 24
             LF++  +P W  ++VN L  G
Sbjct: 778 ESLFSVSTMP-WYASIVNFLVSG 799


>tr|Q0ZCC8|Q0ZCC8_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
          Length = 879

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
 Frame = -3

Query: 266 YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLT--NGEDPIGVDDDMPD 93
           YL++K  +  R+VRW ++L EF+ T+  KKG  ++ ADHL R T  +  D   ++D  PD
Sbjct: 617 YLLSKKDSKARLVRWILLLQEFDITIKDKKGTENVVADHLLRFTIDSTSDITQINDYFPD 676

Query: 92  TYLFNIEMIPKWSQNVVNLLTYG 24
            YL ++ ++P W  N+VN L  G
Sbjct: 677 EYLLSVAIMP-WFANIVNFLVSG 698


>tr|Q0ZCB7|Q0ZCB7_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
          Length = 1332

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = -3

Query: 266 YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGE--DPIGVDDDMPD 93
           YL++K  +  R+V W ++L EF+ T+  KKG  ++ ADHLSRLT     D   ++D  PD
Sbjct: 697 YLLSKKDSKDRLVWWILLLQEFDITIKDKKGTENVVADHLSRLTTDSRTDITPINDYFPD 756

Query: 92  TYLFNIEMIPKWSQNVVNLLTYG 24
             LF++  +P W  N+VN L  G
Sbjct: 757 ESLFSVSTMP-WYANIVNFLVSG 778


>tr|Q0ZCD1|Q0ZCD1_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
          Length = 1738

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
 Frame = -3

Query: 236 RIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLT--NGEDPIGVDDDMPDTYLFNIEMIP 63
           R+VRW ++L EF+ T+  KKG  ++ ADHLSRLT  +  D   +DD  PD  LF++  +P
Sbjct: 665 RLVRWILLLQEFDITIKDKKGTENVVADHLSRLTTDSRSDITPIDDYFPDESLFSVSTMP 724

Query: 62  KWSQNVVNLL 33
            W  N+VN L
Sbjct: 725 -WFANIVNFL 733


>tr|Q0ZCC0|Q0ZCC0_POPTR Gag protein OS=Populus trichocarpa PE=2 SV=1
          Length = 1886

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
 Frame = -3

Query: 236  RIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLT--NGEDPIGVDDDMPDTYLFNIEMIP 63
            R+VRW ++L EF+ T+  KKG  ++ ADHLSRLT  +  D   +DD  PD  LF++  +P
Sbjct: 813  RLVRWILLLQEFDITIKDKKGTENVVADHLSRLTTDSRSDITPIDDYFPDESLFSVSTMP 872

Query: 62   KWSQNVVNLL 33
             W  N+VN L
Sbjct: 873  -WFANIVNFL 881


>tr|A5B5E9|A5B5E9_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_025860 PE=4 SV=1
          Length = 1333

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
 Frame = -3

Query: 266  YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGEDPIG--VDDDMPD 93
            YL+ K     R++RW ++L EF   ++ KKG  ++ ADHLSRL    D  G  ++DD P+
Sbjct: 988  YLLTKQDAKARLIRWILLLQEFHLQILDKKGVENVLADHLSRLVIAHDSHGLPINDDFPE 1047

Query: 92   TYLFNIEMIPKWSQNVVNLLTYG 24
              L +IE+ P W  ++ N L  G
Sbjct: 1048 ESLMSIEVAP-WYSHIANYLVTG 1069


>tr|A5BLH3|A5BLH3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031915 PE=4 SV=1
          Length = 743

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = -3

Query: 266 YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGEDPIG--VDDDMPD 93
           YL+ K     R++RW ++L EF   +  K G  ++ ADHLSRL    D  G  ++DD P+
Sbjct: 230 YLLTKQDAKARLIRWILLLQEFNLQIRHKNGVENVVADHLSRLVIAHDSHGLPINDDFPE 289

Query: 92  TYLFNIEMIPKWSQNVVNLLTYG 24
            YL +IE+ P W  ++ N L  G
Sbjct: 290 EYLMSIEVAP-WYSHIANYLVTG 311


>tr|A5AZ88|A5AZ88_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037041 PE=4 SV=1
          Length = 1048

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
 Frame = -3

Query: 266 YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGEDPIGVDDDM---- 99
           YL  K     R++RW ++L EF+  +  KKG  +L ADHLSR+ + E   GVDDD+    
Sbjct: 737 YLFAKKEAKPRLLRWILLLQEFDLEIKDKKGTENLVADHLSRMNHMEPNEGVDDDINERF 796

Query: 98  PDTYLFNIEMIPKWSQNVVNLL 33
           PD +LF +E  P W  ++VN L
Sbjct: 797 PDEHLFVVEEAP-WYADIVNYL 817


>tr|A5AP17|A5AP17_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_033533 PE=4 SV=1
          Length = 1918

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = -3

Query: 266  YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGEDPIG--VDDDMPD 93
            YL+ K     R++RW ++L EF   +  KKG  ++ ADHLSRL    D  G  ++DD PD
Sbjct: 1554 YLLTKQDAKARLIRWILLLQEFNLQIRDKKGVENVVADHLSRLVIAHDSHGLPINDDFPD 1613

Query: 92   TYLFNIEMIPKWSQNVVNLLTYG 24
              L +IE+ P W  ++ N L  G
Sbjct: 1614 ESLMSIEVAP-WYSHIANYLVTG 1635


>tr|A5C647|A5C647_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_019683 PE=4 SV=1
          Length = 2103

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = -3

Query: 266  YLVNKPCNTGRIVRWFIILLEFEFTVVVKKGKTHLRADHLSRLTNGEDPIG--VDDDMPD 93
            YL+ K     R++RW ++L EF   +  KKG  ++ ADHLSRL    D  G  ++DD P+
Sbjct: 1310 YLLTKQDAKARLIRWILLLQEFNLQIRDKKGVENVVADHLSRLVISHDSHGLPINDDFPE 1369

Query: 92   TYLFNIEMIPKWSQNVVNLLTYG 24
              L +IE+ P W  ++ N L  G
Sbjct: 1370 ESLMSIEVAP-WYSHIANFLVTG 1391