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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917576
Clone id YMU001_000102_F02
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTGCTAGGCAGTCTATTGGTATCCAACTTAGAGGCTACACGAATAGAAACGCTATGGGT
ACAGTGCTCCACTTGTGAGAACTCAAGTGCACGTCGCAGATATTGTGTGCCCTTACTTCC
AGACTACACAAGAAGAATATTGAACGGAAATCAGCTTCATATACAGCTACTGAGCGTCAT
TGACATATCTATCAATGCCATCTCAACAGTGACAACAATTGCACAAGGTACACTAGACAG
ACGTTCAATATTAGATAACCCTCTGCTATCATGGAGTAGAGAGCATAGAACAACCTTCAC
AGAGCAAGATCTAGCTACATCACAAGTGGCAGACATACTTGCATTCAATCTCGGGAACAA
CTTCGTACTACAGAAGTACATGTCGATGGCTGAACGGCCGAATAAGAAGCTTGGACTCTG
CATACTAAGTCAAGATAGTGTGAGAAAGATCATTCAACAACAACAAGACAACGCATCGTT
TGCACTGATGGCG
■■Homology search results ■■ -
sp_hit_id Q68VN4
Definition sp|Q68VN4|MUTL_RICTY DNA mismatch repair protein mutL OS=Rickettsia typhi
Align length 102
Score (bit) 33.5
E-value 0.55
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917576|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_F02.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q68VN4|MUTL_RICTY DNA mismatch repair protein mutL OS=Rickett...    33   0.55 
sp|Q27YE1|L_IPPYV RNA-directed RNA polymerase OS=Ippy virus (iso...    33   0.71 
sp|Q5V9F0|AMPL_DICDI Cytosol aminopeptidase OS=Dictyostelium dis...    32   1.2  
sp|Q5UR12|TGDS_MIMIV Putative dTDP-D-glucose 4,6-dehydratase OS=...    30   6.0  
sp|Q04ED0|SECA_OENOB Protein translocase subunit secA OS=Oenococ...    30   6.0  
sp|Q8P708|Y2806_XANCP UPF0042 protein XCC2806 OS=Xanthomonas cam...    30   7.9  
sp|Q4UX47|Y1307_XANC8 UPF0042 protein XC_1307 OS=Xanthomonas cam...    30   7.9  
sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27...    30   7.9  

>sp|Q68VN4|MUTL_RICTY DNA mismatch repair protein mutL OS=Rickettsia
           typhi GN=mutL PE=3 SV=1
          Length = 600

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 23/102 (22%), Positives = 45/102 (44%)
 Frame = +2

Query: 119 PDYTRRILNGNQLHIQLLSVIDISINAISTVTTIAQGTLDRRSILDNPLLSWSREHRTTF 298
           P+Y R IL            I+   NA++  + +   T D   +  NPL++     +   
Sbjct: 314 PNYVRNIL------------IEAIKNALTNKSQVTVTTTDAIELFKNPLVN----KQPPI 357

Query: 299 TEQDLATSQVADILAFNLGNNFVLQKYMSMAERPNKKLGLCI 424
            +     S+ ++ ++FN   N V QK    +++  +++G CI
Sbjct: 358 NKAINVNSKASEYISFNFNRNTVCQKLTLQSDKIEQEVGKCI 399


>sp|Q27YE1|L_IPPYV RNA-directed RNA polymerase OS=Ippy virus (isolate
            Rat/Central African Republic/Dak An B 188 d/1970) GN=L
            PE=3 SV=1
          Length = 2208

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +2

Query: 161  IQLLSVIDISINAISTVTTIAQGTLDRRSIL--DNPLLSWSREHRTTFTEQDLATSQVAD 334
            + L   +D++  A+S ++ + +   +   I+  D+ L+S  R+H T   E  ++TS VAD
Sbjct: 1770 LDLCVTLDVNCEALSLISHVVKWKREEHYIVLSDDLLVSHDRKHTTLMDETVVSTSDVAD 1829

Query: 335  ILAFNLGNNFVLQKYMSMAERP 400
                    NF+ Q Y     +P
Sbjct: 1830 --------NFLKQIYFESFVKP 1843


>sp|Q5V9F0|AMPL_DICDI Cytosol aminopeptidase OS=Dictyostelium
           discoideum GN=lap PE=3 SV=1
          Length = 520

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 38  TRIETLWVQCSTCENSSARRRYCVPLLPDYTRRI 139
           T  ++LW Q + C N S  R + +PL+P+Y +++
Sbjct: 413 TTTDSLWDQLNECGNISGERLWRMPLIPEYRKQM 446


>sp|Q5UR12|TGDS_MIMIV Putative dTDP-D-glucose 4,6-dehydratase
           OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R141 PE=3
           SV=1
          Length = 323

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
 Frame = +2

Query: 74  CENSSARRRYCVPLLPDYTRRILNGNQLHIQ--------------LLSVIDISINAISTV 211
           C N   R +Y   L+P +   +L+G +LHIQ              +   +D+ IN     
Sbjct: 176 CNNVYGRNQYPEKLIPKFICSLLDGKKLHIQGTGNSRRNFIHAIDVADAVDLVINNGVIG 235

Query: 212 TTIAQGTLDRRSILD 256
            T   G  +  S+LD
Sbjct: 236 ETYNIGVTNEHSVLD 250


>sp|Q04ED0|SECA_OENOB Protein translocase subunit secA OS=Oenococcus
           oeni (strain BAA-331 / PSU-1) GN=secA PE=3 SV=1
          Length = 788

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +2

Query: 107 VPLLPDYTRRILN----GNQLHIQLLSVIDISINAISTVTTIAQGTLDRRSILDNPLLSW 274
           +P++     R++N    G Q    LLS++D   NA+     I    L+ +S+ D  +L +
Sbjct: 632 LPMVYRTIDRVVNAHTTGQQKDWDLLSIVDFVDNALDNSGEITVADLNGKSLNDIKVLLY 691

Query: 275 SREHRTTFTEQD 310
              +R  F +QD
Sbjct: 692 DLANREFFAKQD 703


>sp|Q8P708|Y2806_XANCP UPF0042 protein XCC2806 OS=Xanthomonas
           campestris pv. campestris GN=XCC2806 PE=3 SV=1
          Length = 282

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 107 VPLLPDYTRRILNGNQLHIQLLSVIDISINAISTVTTIAQ 226
           V LLPD+ R  L GN L  Q L+V  I + + S +T +AQ
Sbjct: 31  VELLPDFVRSRLRGNPLGDQRLAV-GIDVRSRSDLTQLAQ 69


>sp|Q4UX47|Y1307_XANC8 UPF0042 protein XC_1307 OS=Xanthomonas
           campestris pv. campestris (strain 8004) GN=XC_1307 PE=3
           SV=1
          Length = 282

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 107 VPLLPDYTRRILNGNQLHIQLLSVIDISINAISTVTTIAQ 226
           V LLPD+ R  L GN L  Q L+V  I + + S +T +AQ
Sbjct: 31  VELLPDFVRSRLRGNPLGDQRLAV-GIDVRSRSDLTQLAQ 69


>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220
            OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
          Length = 919

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = -2

Query: 405  LFGRSAIDMYFCSTKLFPRLNASMSATCDVARS-CSVKVVLCSLLH-DSRGLSNIERLSS 232
            LF  S++ + FC+  L P+L           RS C+ +VVL SL H +     +++ L  
Sbjct: 838  LFNFSSVPVDFCAESLLPKLTVIKLKYLPQLRSLCNDRVVLESLEHLEVESCESLKNLPF 897

Query: 231  VPCAI-VVTVEMALIDMSMTL 172
            VP    ++  +MA   MS TL
Sbjct: 898  VPGNTGMINEQMAWEYMSRTL 918
tr_hit_id A8JIM3
Definition tr|A8JIM3|A8JIM3_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 147
Score (bit) 39.7
E-value 0.078
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917576|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_F02.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8JIM3|A8JIM3_CHLRE Predicted protein OS=Chlamydomonas reinha...    40   0.078
tr|A8J372|A8J372_CHLRE Predicted protein (Fragment) OS=Chlamydom...    38   0.23 
tr|A9EB90|A9EB90_9RHOB Iron-containing alcohol dehydrogenase OS=...    34   4.3  
tr|A3U3I0|A3U3I0_9RHOB Probable iron-containing alcohol dehydrog...    34   4.3  
tr|A3T2N2|A3T2N2_9RHOB Probable iron-containing alcohol dehydrog...    34   4.3  
tr|B4SNA6|B4SNA6_STRM5 Xylose isomerase domain protein TIM barre...    33   5.6  
tr|A7A7P3|A7A7P3_BIFAD Putative uncharacterized protein OS=Bifid...    33   7.3  
tr|Q5AUC3|Q5AUC3_EMENI Putative uncharacterized protein OS=Emeri...    33   7.3  
tr|B1ILQ3|B1ILQ3_CLOBK Acetoin catabolism protein X OS=Clostridi...    33   9.5  
tr|B6KUE3|B6KUE3_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.5  
tr|A0BR95|A0BR95_PARTE Chromosome undetermined scaffold_122, who...    33   9.5  

>tr|A8JIM3|A8JIM3_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_195221 PE=4 SV=1
          Length = 690

 Score = 39.7 bits (91), Expect = 0.078
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
 Frame = +2

Query: 56  WVQCSTCENS---------SARRRYCVPLLPDYTRRILNGNQLHIQLLSVIDISINAIST 208
           W+ C  C  +         SAR  +   L  +Y   +LN +  +   LS++D+ +   S+
Sbjct: 371 WLVCKQCTGTGKSALPVTASARLHHLPHLTRNYIGTVLNLDPFYQMQLSLVDVGVGFTSS 430

Query: 209 VTTIAQGTLDRRSILDNPLLSWSREHRTTFTEQDLATSQVADILAFNLGNNFVLQKYMSM 388
                     R   L   L++    H +      +   +  D+L++++ NN +   Y+S+
Sbjct: 431 TIGHYIPRFGRPHALATALVT---SHGSQQERLAMLPQEFGDLLSWSIDNNPLYASYLSV 487

Query: 389 AERPNKKLGLCILSQDSVRKIIQQQQD 469
            ER      L  L   +V +I++  +D
Sbjct: 488 VERETPASELPFLPPHTVEEIVRAARD 514


>tr|A8J372|A8J372_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_149921 PE=4
           SV=1
          Length = 599

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
 Frame = +2

Query: 56  WVQCSTC---ENSSARRRYCVPLLPDYTRRILNGNQLHIQLLSVIDISINAISTVTTIAQ 226
           W+ C TC   +    R  + V   PDY R+++        LLS++++     +       
Sbjct: 215 WMLCPTCAGKQQQDGRAEHVVFHTPDYARQVVRLEPSLQMLLSLVNVGAGFAANAKGYFT 274

Query: 227 GTLDRRSILDNPLLSWSREHRTTFTEQDLATSQVADILAFNLGNNFVLQKYMSMAER 397
             L +   +   +L+W     +      L    V ++L ++L  N + Q Y+S+ E+
Sbjct: 275 ARLQQPHAVGAAMLAWD---DSAAERAQLVPDGVREVLGWSLAFNPIYQAYLSVIEQ 328


>tr|A9EB90|A9EB90_9RHOB Iron-containing alcohol dehydrogenase
           OS=Oceanibulbus indolifex HEL-45 GN=OIHEL45_17596 PE=4
           SV=1
          Length = 384

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 20  VSNLEATRIETLWVQCSTCENSSARRRYCVPLLPDYT---RRILNGNQLHIQLLSVIDIS 190
           V     T  E  WV   T E+   +  Y   LLPD      ++  G   HI   + +D  
Sbjct: 135 VPTTAGTGSEVTWVSVLTSESHEKKAVYAPQLLPDVALLDAKLTLGMPRHITAATALDAM 194

Query: 191 INAISTVTT------IAQGTLDRRSIL 253
           ++AI  VT+      I+ G  D+  +L
Sbjct: 195 VHAIEAVTSRTRKNPISDGMADKALVL 221


>tr|A3U3I0|A3U3I0_9RHOB Probable iron-containing alcohol
           dehydrogenase OS=Oceanicola batsensis HTCC2597
           GN=OB2597_18676 PE=4 SV=1
          Length = 384

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 20  VSNLEATRIETLWVQCSTCENSSARRRYCVPLLPDYT---RRILNGNQLHIQLLSVIDIS 190
           V     T  E  WV   T E+   +  Y   LLPD      ++  G   HI   + +D  
Sbjct: 135 VPTTAGTGSEVTWVSVLTSESHEKKAVYAPQLLPDVALLDAKLTLGMPRHITAATALDAM 194

Query: 191 INAISTVTT------IAQGTLDRRSIL 253
           ++AI  VT+      I+ G  D+  +L
Sbjct: 195 VHAIEAVTSRTRKNPISDGMADKALVL 221


>tr|A3T2N2|A3T2N2_9RHOB Probable iron-containing alcohol
           dehydrogenase OS=Sulfitobacter sp. NAS-14.1
           GN=NAS141_04723 PE=4 SV=1
          Length = 384

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 20  VSNLEATRIETLWVQCSTCENSSARRRYCVPLLPDYT---RRILNGNQLHIQLLSVIDIS 190
           V     T  E  WV   T E+   +  Y   LLPD      ++  G   HI   + +D  
Sbjct: 135 VPTTAGTGSEVTWVSVLTSESHEKKAVYAPQLLPDVALLDAKLTLGMPRHITAATALDAM 194

Query: 191 INAISTVTT------IAQGTLDRRSIL 253
           ++AI  VT+      I+ G  D+  +L
Sbjct: 195 VHAIEAVTSRTRKNPISDGMADKALVL 221


>tr|B4SNA6|B4SNA6_STRM5 Xylose isomerase domain protein TIM barrel
           OS=Stenotrophomonas maltophilia (strain R551-3)
           GN=Smal_1046 PE=3 SV=1
          Length = 287

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
 Frame = +2

Query: 125 YTRRILNGNQLHIQLLSVIDISINAISTVTTIAQGTLDRRSILDNPLLSWSREHRTTFTE 304
           YT R  N   L  QL  V D  ++A+ TV T      + + +LD   +     H     E
Sbjct: 37  YTLR--NAGSLDQQLKIVHDAGVHAVETVGTQNTSAAELKQLLDRYSIKAISSH-VPLAE 93

Query: 305 QDLATSQVADILAFN--LGNNFVLQKYMSMAERPNKKLGLCILSQD 436
                S +  ++AFN  +GN  ++  Y+   +RP    G   L Q+
Sbjct: 94  ---LRSNLDGVVAFNRSIGNTTLVVPYLDKKDRPTDAAGWTALGQE 136


>tr|A7A7P3|A7A7P3_BIFAD Putative uncharacterized protein
           OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_01882
           PE=4 SV=1
          Length = 189

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +2

Query: 125 YTRRILNGNQLHIQLLSVIDISINAISTVTTIAQGTLDRRSILDNPLLSWSREHRTTFTE 304
           YT R  N   L  QL  V D  I A+ TV T        + +LD     +S +  +T  +
Sbjct: 39  YTLR--NVASLEQQLKIVHDAGIRAVETVGTQDVSAKTLKQLLDK----YSIKAISTHAQ 92

Query: 305 QDLATSQVADILAFN--LGNNFVLQKYMSMAERPNKKLGLCILSQD 436
                S +  ++AFN  +GN  ++  Y++  ERP    G   L ++
Sbjct: 93  LANLRSDLDGVVAFNKAIGNTTLVVPYLTQEERPTDAAGWTALGKE 138


>tr|Q5AUC3|Q5AUC3_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN8107.2 PE=4 SV=1
          Length = 765

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
 Frame = +2

Query: 116 LPDYTRRILNGNQLHIQLLSVIDISINAISTVTTIA-QGTLDRRSILDNPLLSWSREHRT 292
           +PD     L   + +IQ L+ I +S+NAI T+      G L  +    N L+ WS    T
Sbjct: 1   MPDILEDRLRMPRSNIQFLTSIILSMNAILTILIAPFTGYLSDKVARKNNLMLWSYAVNT 60

Query: 293 TFTEQDLATSQVADILAFNL----GNNFVLQKYMSM------AERPNKKLGLCIL 427
             T    A+S +A  +   L    G + +    M+M       E  +K +G+C+L
Sbjct: 61  LGTIFTAASSTLAGFIIGRLIQTVGGSLIYIAGMAMLGGAVGPEHLSKAMGICVL 115


>tr|B1ILQ3|B1ILQ3_CLOBK Acetoin catabolism protein X OS=Clostridium
           botulinum (strain Okra / Type B1) GN=acoX PE=4 SV=1
          Length = 331

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = +2

Query: 173 SVIDISINAISTVTTIAQGTLDRRSILDNPLLSWSREHRTTFTEQDLATSQVADILAFNL 352
           +VID++ N    +  IA GT+++  + D  +++ + E++ T  E+ +        ++F  
Sbjct: 239 AVIDLTENKYKIIAPIASGTIEKVHMGDTKIINLNEEYKFTSKEKGVIALDGEREISFKK 298

Query: 353 GNNFVLQ 373
           G  F+ +
Sbjct: 299 GETFIFK 305


>tr|B6KUE3|B6KUE3_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_080720 PE=4 SV=1
          Length = 430

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +2

Query: 86  SARRRYCVPLLPDYTRRILNG-NQLHIQLLSVIDISINAI-STVTTIAQGTLDRRSILDN 259
           S+RR   +P LP    ++LNG NQLH+ L SV    + A+ +TV+      L  R +L N
Sbjct: 46  SSRRLVLLPSLPRACLQLLNGNNQLHVFLRSVCTPDLPALQATVSGPFFEELQFRFLLQN 105

Query: 260 PLLS 271
            LLS
Sbjct: 106 CLLS 109