NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917583
Clone id YMU001_000102_F10
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTCCTCAGCAACGTACGGATCACATACTAGTTTCTTTGGAAGGCAGGTCATTATGACTCA
TGAGAGAGAGACGTACATCATTCATTTCAAATTATGTTCACACGGTTGAATGGGCCTCTT
CAGGCACAAAGAATGAAACCGAACAAAATTAAGACAATGAGCGCTCAGGGGAGGAAGCAG
ACTCACAGCTATCCTCCACTAGGCACCTTGCACTTTCCCTGCTGTGAACTGCAAAGCCTG
GGCAAAGACGCAGCGTAGAAGACATTGGCATGCGACTCACAATGCTGCCAACAACCCTCA
TCAAAATTCATGGAGTAGCTCACAGGATCGTAATGGAAGCTAGCTGCCTTCTGCACTTGC
CCCATCTTCCTTACCTTCGCCCTCACTCTCCTCAGAAGCTTCTTCAATCTTTCTGGCGCT
CTGCGCAATAGGTTCCCACTGCTCTCTCCTGCTACCCACTCGTCACTTCCAAGCTTTCTC
CTCTTGTTCGCACCCTCTTCCCACCATTGCAGCACCTCTTTCTCTTCCTTGCAGCAT
■■Homology search results ■■ -
sp_hit_id Q6BDG1
Definition sp|Q6BDG1|MATK_KETDA Maturase K OS=Keteleeria davidiana
Align length 38
Score (bit) 35.4
E-value 0.18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917583|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_F10.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BDG1|MATK_KETDA Maturase K OS=Keteleeria davidiana GN=matK ...    35   0.18 
sp|Q9MV46|MATK_ABIHL Maturase K OS=Abies holophylla GN=matK PE=3...    35   0.18 
sp|Q9MV51|MATK_ABIFI Maturase K OS=Abies firma GN=matK PE=3 SV=1       35   0.18 
sp|Q8MDU0|MATK_ABIBR Maturase K (Fragment) OS=Abies bracteata GN...    35   0.18 
sp|Q9MV49|MATK_TSUCA Maturase K OS=Tsuga canadensis GN=matK PE=3...    33   0.87 
sp|Q9EQ32|BCAP_MOUSE Phosphoinositide 3-kinase adapter protein 1...    30   5.7  
sp|Q6ZUJ8|BCAP_HUMAN Phosphoinositide 3-kinase adapter protein 1...    30   7.4  

>sp|Q6BDG1|MATK_KETDA Maturase K OS=Keteleeria davidiana GN=matK
           PE=3 SV=1
          Length = 519

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 470 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 506


>sp|Q9MV46|MATK_ABIHL Maturase K OS=Abies holophylla GN=matK PE=3
           SV=1
          Length = 509

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 470 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 506


>sp|Q9MV51|MATK_ABIFI Maturase K OS=Abies firma GN=matK PE=3 SV=1
          Length = 509

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 470 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 506


>sp|Q8MDU0|MATK_ABIBR Maturase K (Fragment) OS=Abies bracteata
           GN=matK PE=3 SV=1
          Length = 508

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 470 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 506


>sp|Q9MV49|MATK_TSUCA Maturase K OS=Tsuga canadensis GN=matK PE=3
           SV=1
          Length = 514

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           +PA + KA A +QR R WH+      NP  NSW   QD
Sbjct: 470 YPAFSSKAAAHSQRERIWHSDIPQI-NPLANSWQKIQD 506


>sp|Q9EQ32|BCAP_MOUSE Phosphoinositide 3-kinase adapter protein 1
           OS=Mus musculus GN=Pik3ap1 PE=1 SV=1
          Length = 811

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +3

Query: 81  FISNYVHTVEWASSGTKNETEQN*DNERSGEEADSQLSSTRHLALSLL 224
           FI  YV TV+   +  K E  Q       GEEAD    S  HL+  LL
Sbjct: 391 FIDEYVETVDMLKTHIKEELMQ-------GEEADDVYESMAHLSTDLL 431


>sp|Q6ZUJ8|BCAP_HUMAN Phosphoinositide 3-kinase adapter protein 1
           OS=Homo sapiens GN=PIK3AP1 PE=1 SV=2
          Length = 805

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +3

Query: 81  FISNYVHTVEWASSGTKNETEQN*DNERSGEEADSQLSSTRHLALSLL 224
           FI  YV TV+   S  K E          GEEAD+   S  HL+  LL
Sbjct: 390 FIDEYVETVDMLKSHIKEELMH-------GEEADAVYESMAHLSTDLL 430
tr_hit_id A9PG20
Definition tr|A9PG20|A9PG20_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 73
Score (bit) 40.0
E-value 0.076
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917583|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_F10.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PG20|A9PG20_POPTR Putative uncharacterized protein OS=Popul...    40   0.076
tr|A9NN00|A9NN00_PICSI Putative uncharacterized protein OS=Picea...    37   0.65 
tr|A9P2E7|A9P2E7_PICSI Putative uncharacterized protein OS=Picea...    36   1.4  
tr|Q9TJG4|Q9TJG4_KETDA Maturase K (Fragment) OS=Keteleeria david...    35   1.9  
tr|Q9MV57|Q9MV57_9CONI Maturase K OS=Keteleeria evelyniana GN=ma...    35   1.9  
tr|Q8MEW5|Q8MEW5_KETDA Maturase K OS=Keteleeria davidiana GN=mat...    35   1.9  
tr|Q0KII0|Q0KII0_SOLLC IS10 transposase, putative OS=Solanum lyc...    35   1.9  
tr|B7SDQ0|B7SDQ0_KETDA Maturase K (Fragment) OS=Keteleeria david...    35   1.9  
tr|B7SDP9|B7SDP9_9CONI Maturase K (Fragment) OS=Abies hidalgensi...    35   1.9  
tr|A7R7N6|A7R7N6_VITVI Chromosome undetermined scaffold_1901, wh...    35   3.2  
tr|Q84YX5|Q84YX5_ORYSJ Os08g0293100 protein OS=Oryza sativa subs...    34   4.2  
tr|A9NLF3|A9NLF3_PICSI Putative uncharacterized protein OS=Picea...    34   4.2  
tr|A7PMD3|A7PMD3_VITVI Chromosome chr14 scaffold_21, whole genom...    34   4.2  
tr|A5ATC0|A5ATC0_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A2YTL8|A2YTL8_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q9TJG5|Q9TJG5_9CONI Maturase K (Fragment) OS=Abies numidica G...    34   5.5  
tr|A9P0M0|A9P0M0_PICSI Putative uncharacterized protein OS=Picea...    34   5.5  
tr|A3B9Z0|A3B9Z0_ORYSJ Putative uncharacterized protein OS=Oryza...    34   5.5  
tr|Q9FYR2|Q9FYR2_ARATH Genomic DNA, chromosome 5, BAC clone:T13C...    33   7.2  
tr|A0MFJ1|A0MFJ1_ARATH Putative uncharacterized protein (Fragmen...    33   7.2  
tr|Q9MV53|Q9MV53_9CONI Maturase K OS=Tsuga mertensiana GN=matK P...    33   9.3  
tr|Q9MV50|Q9MV50_9CONI Maturase K OS=Nothotsuga longibracteata G...    33   9.3  
tr|Q8MEW4|Q8MEW4_9CONI Maturase K OS=Nothotsuga longibracteata G...    33   9.3  
tr|Q8MDT6|Q8MDT6_9CONI Maturase K (Fragment) OS=Tsuga mertensian...    33   9.3  
tr|Q67UK6|Q67UK6_ORYSJ NHL repeat-containing protein-like OS=Ory...    33   9.3  
tr|Q15K43|Q15K43_9CONI Maturase K (Fragment) OS=Tsuga mertensian...    33   9.3  

>tr|A9PG20|A9PG20_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 172

 Score = 40.0 bits (92), Expect = 0.076
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 509 QWWEEGANKRRKLGS-DEWVAGESSGNLLRRAPEXXXXXXXXXXXXXXKMGQVQKAASFH 333
           QWW +G    +K+    E VAG      +RR                   G  ++  +F 
Sbjct: 62  QWWFKGIRALKKIREWSEIVAGPKWKTFIRR----------FNRTKSSGSGSGRRHGNFQ 111

Query: 332 YDPVSYSMNFDEG 294
           YDP+SYS+NFDEG
Sbjct: 112 YDPLSYSLNFDEG 124


>tr|A9NN00|A9NN00_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 151

 Score = 37.0 bits (84), Expect = 0.65
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = -2

Query: 506 WWEEGANKRRKLGSDEWVAGESSGNLLRRAPEXXXXXXXXXXXXXXKMGQVQKAASFHYD 327
           WW +G N  R  G       E +G+     P+                    K + FHYD
Sbjct: 58  WWRKGWNSVRSAGEWSETINEDAGSCCS-GPKWKHFVRRLKRGGKTIRSS--KPSRFHYD 114

Query: 326 PVSYSMNFDEG 294
           P+SY +NFD G
Sbjct: 115 PLSYELNFDHG 125


>tr|A9P2E7|A9P2E7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 147

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -2

Query: 350 KAASFHYDPVSYSMNFDEGCWQHCE 276
           K+A F YDP+SYS+NFD+G  Q  E
Sbjct: 99  KSARFQYDPLSYSLNFDDGSRQEEE 123


>tr|Q9TJG4|Q9TJG4_KETDA Maturase K (Fragment) OS=Keteleeria
           davidiana GN=matK PE=3 SV=1
          Length = 290

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 241 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 277


>tr|Q9MV57|Q9MV57_9CONI Maturase K OS=Keteleeria evelyniana GN=matK
           PE=3 SV=1
          Length = 519

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 470 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 506


>tr|Q8MEW5|Q8MEW5_KETDA Maturase K OS=Keteleeria davidiana GN=matK
           PE=3 SV=1
          Length = 519

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 470 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 506


>tr|Q0KII0|Q0KII0_SOLLC IS10 transposase, putative OS=Solanum
           lycopersicum GN=LES1_20t00008 PE=4 SV=1
          Length = 648

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = -2

Query: 503 WEEGANKRRKLGS-DEWVAGESSGNLLRRAPEXXXXXXXXXXXXXXKMGQVQKAASFHYD 327
           W +G N  +KL    E VAG      +RR                       + A F YD
Sbjct: 64  WAKGINALKKLREWSEIVAGPRWKTFIRRFHRNKSG---------------NRNAKFQYD 108

Query: 326 PVSYSMNFDEG 294
           P+SYS+NFDEG
Sbjct: 109 PLSYSLNFDEG 119


>tr|B7SDQ0|B7SDQ0_KETDA Maturase K (Fragment) OS=Keteleeria
           davidiana GN=matK PE=4 SV=1
          Length = 481

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 432 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 468


>tr|B7SDP9|B7SDP9_9CONI Maturase K (Fragment) OS=Abies hidalgensis
           GN=matK PE=4 SV=1
          Length = 471

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 FPAVNCKAWAKTQRRRHWHATHNAANNPHQNSWSSSQD 328
           FPA + KA A++QR R WH+      NP  NSW   QD
Sbjct: 432 FPAFSSKAAARSQRERIWHSDIPQI-NPLANSWQKIQD 468


>tr|A7R7N6|A7R7N6_VITVI Chromosome undetermined scaffold_1901, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010126001 PE=4 SV=1
          Length = 105

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -2

Query: 350 KAASFHYDPVSYSMNFDEGC----WQHC 279
           K  +F YD VSYS NFD+GC    + HC
Sbjct: 64  KPLTFQYDAVSYSQNFDDGCHKEEYGHC 91