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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917590
Clone id YMU001_000102_G08
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCTCAGGTAATAGCTTGTGTACACAAAGGAAACCCCTACCCAGCATGCTTTGTCGTAAA
AGGGCCGGACCCCATCATGTAAAAAACTGGTTCCAGGATCAACTCCTTGGTGCCTTCCCT
ACTTTGACTGATGTCATCAGTGAGTATGCCCAGTACATGCCATTTGGGCCTTGCATAAGG
AATGAGCCTCACCAGAATGAGCATGTTCAAGATAATGAGGGAGGTTGAAACATCCCACAA
CCACGGGCCCTTTTCTCAACTGTAGGGGCAAGTCTTCCGAGACTTCTAAGCATTTGTCCT
GATGAATTATCAACAACTTGCCCACTTATGTCCACCATATATGCCTTTCCACGAGTTCTG
GGCAGCCCCCTACCAGCAAGTGCATCAAGGTCCCTTTTGTGAAGTTCTCTACCATTTACA
AAAACTTCTGTGGATCCACCAGCACAATCTTTGACAAGAGGCAACTTAAATATCTGCAAT
AAAAGGCGGAATGATCCCAAGACATGGGCCACCCATTACTCCCCAAAATCCTGCCTCATA
GTCATACCAG
■■Homology search results ■■ -
sp_hit_id Q9Y7U6
Definition sp|Q9Y7U6|RGF1_SCHPO Rho1 guanine nucleotide exchange factor 1 OS=Schizosaccharomyces pombe
Align length 101
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917590|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_G08.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y7U6|RGF1_SCHPO Rho1 guanine nucleotide exchange factor 1 O...    32   2.6  
sp|Q6INI0|PI3R5_XENLA Phosphoinositide 3-kinase regulatory subun...    32   2.6  
sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotra...    30   7.8  

>sp|Q9Y7U6|RGF1_SCHPO Rho1 guanine nucleotide exchange factor 1
            OS=Schizosaccharomyces pombe GN=rgf1 PE=1 SV=1
          Length = 1334

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
 Frame = -3

Query: 524  GE*WVAHVLGSFRLLLQIFKLPLVKDCAGGSTE---------------VFVNGRELHKRD 390
            GE +  H+L + R L  IFK PL K  AG ++                + V  + ++KR+
Sbjct: 830  GEHYDLHLLDANRQL--IFKGPLKKRSAGSTSSESASDVTLFLFDHALLIVKPKTINKRE 887

Query: 389  LDALAGRGLPRTRGKAYMVDISGQVVDNSSGQMLRSLGRLA 267
            L  +  R +P    + ++VD +G  +  SS Q L ++ + A
Sbjct: 888  LLKVFQRPIPLLLLQLFLVDDNGLRIPYSSKQQLAAVSKAA 928


>sp|Q6INI0|PI3R5_XENLA Phosphoinositide 3-kinase regulatory subunit
           5 OS=Xenopus laevis GN=pik3r5 PE=2 SV=2
          Length = 879

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 485 LLLQIFKLPLVKDCAGGSTEVFVNGREL-HKRDLDALAGRG 366
           LLLQ+++  +  D  G  TEVF+   EL H  DL A+   G
Sbjct: 668 LLLQLYRAEITFDSGGKQTEVFIQCLELGHSADLRAIRASG 708


>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1
           retrotransposable element R1DM OS=Drosophila
           melanogaster PE=4 SV=1
          Length = 1021

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -2

Query: 270 CPYS*EKGPWLWDVSTSLIILNMLILVRLIPYARPKWHVLGILTDDISQSREGTKELILE 91
           CP     GP++WD      IL  ++L RL PY +     L    DD+    EG    +LE
Sbjct: 632 CPQGSISGPFIWD------ILMDVLLQRLQPYCQ-----LSAYADDLLLLVEGNSRAVLE 680
tr_hit_id Q6L5C9
Definition tr|Q6L5C9|Q6L5C9_ORYSJ Os05g0586400 protein OS=Oryza sativa subsp. japonica
Align length 87
Score (bit) 108.0
E-value 7.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917590|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_G08.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6L5C9|Q6L5C9_ORYSJ Os05g0586400 protein OS=Oryza sativa subs...   108   7e-32
tr|B8AX77|B8AX77_ORYSI Putative uncharacterized protein OS=Oryza...   108   7e-32
tr|Q6K2T0|Q6K2T0_ORYSJ Os02g0258300 protein OS=Oryza sativa subs...    99   4e-29
tr|B8AFA0|B8AFA0_ORYSI Putative uncharacterized protein OS=Oryza...    99   4e-29
tr|A3B7A1|A3B7A1_ORYSJ Putative uncharacterized protein OS=Oryza...    95   1e-27
tr|A3A580|A3A580_ORYSJ Putative uncharacterized protein OS=Oryza...    87   2e-25
tr|Q9M155|Q9M155_ARATH Putative uncharacterized protein AT4g0109...   110   4e-23
tr|A9S5Q4|A9S5Q4_PHYPA Predicted protein OS=Physcomitrella paten...    77   3e-22
tr|Q6NQ63|Q6NQ63_ARATH At1g01440 OS=Arabidopsis thaliana GN=At1g...   105   2e-21
tr|Q9M371|Q9M371_ARATH Putative uncharacterized protein F15G16.6...   104   3e-21
tr|A7PZS8|A7PZS8_VITVI Chromosome chr15 scaffold_40, whole genom...   103   6e-21
tr|A5BFB0|A5BFB0_VITVI Putative uncharacterized protein OS=Vitis...   103   6e-21
tr|Q0WVG1|Q0WVG1_ARATH Putative uncharacterized protein At2g4638...   103   8e-21
tr|A7QNA6|A7QNA6_VITVI Chromosome chr2 scaffold_132, whole genom...   102   1e-20
tr|O04620|O04620_ARATH A_IG002N01.13 protein OS=Arabidopsis thal...    98   2e-19
tr|Q1PG90|Q1PG90_STRAF Putative uncharacterized protein OS=Strig...    98   3e-19
tr|Q0JL61|Q0JL61_ORYSJ Os01g0621300 protein (Putative uncharacte...    97   6e-19
tr|Q654D6|Q654D6_ORYSJ Os06g0524300 protein OS=Oryza sativa subs...    96   9e-19
tr|B8B352|B8B352_ORYSI Putative uncharacterized protein OS=Oryza...    96   9e-19
tr|B8ABX8|B8ABX8_ORYSI Putative uncharacterized protein OS=Oryza...    96   2e-18
tr|Q9SKE1|Q9SKE1_ARATH Putative uncharacterized protein At2g4638...    92   2e-17
tr|A9TD39|A9TD39_PHYPA Predicted protein OS=Physcomitrella paten...    90   9e-17
tr|A3BC98|A3BC98_ORYSJ Putative uncharacterized protein OS=Oryza...    83   8e-15
tr|Q2SFI3|Q2SFI3_HAHCH Putative uncharacterized protein OS=Hahel...    35   5e-04
tr|Q9SZ04|Q9SZ04_ARATH Extra-large G-protein-like OS=Arabidopsis...    31   0.094
tr|O81225|O81225_ARATH Extra-large G-protein OS=Arabidopsis thal...    31   0.56 
tr|O80462|O80462_ARATH Putative GTP-binding protein (Extra large...    31   0.56 
tr|Q9C516|Q9C516_ARATH G-protein alpha subunit, putative (Putati...    31   0.56 
tr|Q93Y21|Q93Y21_ARATH Putative GTP-binding protein (Extra large...    31   0.56 
tr|A7QU00|A7QU00_VITVI Chromosome undetermined scaffold_174, who...    31   1.2  

>tr|Q6L5C9|Q6L5C9_ORYSJ Os05g0586400 protein OS=Oryza sativa subsp.
           japonica GN=OJ1007_H05.1 PE=4 SV=1
          Length = 780

 Score =  108 bits (271), Expect(2) = 7e-32
 Identities = 51/87 (58%), Positives = 65/87 (74%)
 Frame = -3

Query: 470 FKLPLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISGQVVDNSSGQM 291
           F  P+ K+CAGG+T V VNGRELH++D + LAGRGLPR  GK+Y V+I+G V+D ++G+ 
Sbjct: 694 FNYPMPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTGKK 753

Query: 290 LRSLGRLAPTVEKRARGCGMFQPPSLS 210
           LR LG+LAPTVEK  RG GM  P   S
Sbjct: 754 LRKLGKLAPTVEKLKRGFGMHVPEEKS 780



 Score = 51.6 bits (122), Expect(2) = 7e-32
 Identities = 20/26 (76%), Positives = 21/26 (80%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIAD 472
           WYDY AGFWGVMG  C GIIPPFI +
Sbjct: 668 WYDYRAGFWGVMGHECSGIIPPFIKE 693


>tr|B8AX77|B8AX77_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21176 PE=4 SV=1
          Length = 781

 Score =  108 bits (271), Expect(2) = 7e-32
 Identities = 51/87 (58%), Positives = 65/87 (74%)
 Frame = -3

Query: 470 FKLPLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISGQVVDNSSGQM 291
           F  P+ K+CAGG+T V VNGRELH++D + LAGRGLPR  GK+Y V+I+G V+D ++G+ 
Sbjct: 695 FNYPMPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTGKK 754

Query: 290 LRSLGRLAPTVEKRARGCGMFQPPSLS 210
           LR LG+LAPTVEK  RG GM  P   S
Sbjct: 755 LRKLGKLAPTVEKLKRGFGMHVPEEKS 781



 Score = 51.6 bits (122), Expect(2) = 7e-32
 Identities = 20/26 (76%), Positives = 21/26 (80%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIAD 472
           WYDY AGFWGVMG  C GIIPPFI +
Sbjct: 669 WYDYRAGFWGVMGHECSGIIPPFIKE 694


>tr|Q6K2T0|Q6K2T0_ORYSJ Os02g0258300 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0060K08.3 PE=4 SV=1
          Length = 842

 Score = 99.0 bits (245), Expect(2) = 4e-29
 Identities = 48/80 (60%), Positives = 60/80 (75%)
 Frame = -3

Query: 461 PLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISGQVVDNSSGQMLRS 282
           P+ K CA G+T VFVNGRELH++DLD L GRGLP + G++Y V++SG+V D  SG+ L  
Sbjct: 759 PMPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYC 818

Query: 281 LGRLAPTVEKRARGCGMFQP 222
           LG+LAPTVEK  RG GM  P
Sbjct: 819 LGKLAPTVEKMKRGFGMRVP 838



 Score = 52.4 bits (124), Expect(2) = 4e-29
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIADI 469
           WYDY AGFWGVMG  CLG+IPP+I ++
Sbjct: 730 WYDYRAGFWGVMGQSCLGMIPPYIPEL 756


>tr|B8AFA0|B8AFA0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06635 PE=4 SV=1
          Length = 836

 Score = 99.0 bits (245), Expect(2) = 4e-29
 Identities = 48/80 (60%), Positives = 60/80 (75%)
 Frame = -3

Query: 461 PLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISGQVVDNSSGQMLRS 282
           P+ K CA G+T VFVNGRELH++DLD L GRGLP + G++Y V++SG+V D  SG+ L  
Sbjct: 753 PMPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYC 812

Query: 281 LGRLAPTVEKRARGCGMFQP 222
           LG+LAPTVEK  RG GM  P
Sbjct: 813 LGKLAPTVEKMKRGFGMRVP 832



 Score = 52.4 bits (124), Expect(2) = 4e-29
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIADI 469
           WYDY AGFWGVMG  CLG+IPP+I ++
Sbjct: 724 WYDYRAGFWGVMGQSCLGMIPPYIPEL 750


>tr|A3B7A1|A3B7A1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018923 PE=4 SV=1
          Length = 763

 Score = 95.1 bits (235), Expect(2) = 1e-27
 Identities = 42/70 (60%), Positives = 56/70 (80%)
 Frame = -3

Query: 470 FKLPLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISGQVVDNSSGQM 291
           F  P+ K+CAGG+T V VNGRELH++D + LAGRGLPR  GK+Y V+I+G V+D ++G+ 
Sbjct: 694 FNYPMPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTGKK 753

Query: 290 LRSLGRLAPT 261
           LR LG+LAPT
Sbjct: 754 LRKLGKLAPT 763



 Score = 51.6 bits (122), Expect(2) = 1e-27
 Identities = 20/26 (76%), Positives = 21/26 (80%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIAD 472
           WYDY AGFWGVMG  C GIIPPFI +
Sbjct: 668 WYDYRAGFWGVMGHECSGIIPPFIKE 693


>tr|A3A580|A3A580_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_005952 PE=4 SV=1
          Length = 881

 Score = 86.7 bits (213), Expect(2) = 2e-25
 Identities = 41/71 (57%), Positives = 53/71 (74%)
 Frame = -3

Query: 461  PLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISGQVVDNSSGQMLRS 282
            P+ K CA G+T VFVNGRELH++DLD L GRGLP + G++Y V++SG+V D  SG+ L  
Sbjct: 800  PMPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYC 859

Query: 281  LGRLAPTVEKR 249
            LG+LAPT   R
Sbjct: 860  LGKLAPTAAVR 870



 Score = 52.4 bits (124), Expect(2) = 2e-25
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIADI 469
           WYDY AGFWGVMG  CLG+IPP+I ++
Sbjct: 771 WYDYRAGFWGVMGQSCLGMIPPYIPEL 797


>tr|Q9M155|Q9M155_ARATH Putative uncharacterized protein AT4g01090
           (AT4g01090/F2N1_13) OS=Arabidopsis thaliana GN=At4g01090
           PE=2 SV=1
          Length = 714

 Score =  110 bits (276), Expect = 4e-23
 Identities = 52/97 (53%), Positives = 71/97 (73%)
 Frame = -3

Query: 500 LGSFRLLLQIFKLPLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISG 321
           LG     ++ F  P++ +CA G+T+VFVNGRELHKRD + L GRGLPR + ++Y+VDISG
Sbjct: 617 LGIIPPFIEEFSHPMLDNCAAGNTDVFVNGRELHKRDFELLVGRGLPRDKNRSYIVDISG 676

Query: 320 QVVDNSSGQMLRSLGRLAPTVEKRARGCGMFQPPSLS 210
           +++D  SG+ L SLG+LAPT+EK   G GM  P SL+
Sbjct: 677 RILDQDSGEELHSLGKLAPTIEKVKHGFGMRVPRSLA 713



 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIAD 472
           WYDY AGFWGVMG PCLGIIPPFI +
Sbjct: 601 WYDYRAGFWGVMGKPCLGIIPPFIEE 626


>tr|A9S5Q4|A9S5Q4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_162988 PE=4 SV=1
          Length = 1069

 Score = 77.4 bits (189), Expect(2) = 3e-22
 Identities = 42/91 (46%), Positives = 55/91 (60%)
 Frame = -3

Query: 485  LLLQIFKLPLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISGQVVDN 306
            L+ ++   PL +  +GG T V VNGRELHK D D L  RGLP T G  Y+VDI G V + 
Sbjct: 979  LIEELSLQPLSRFSSGGQTGVVVNGRELHKSDYDLLVRRGLPPTPGMTYLVDIEGHVKEV 1038

Query: 305  SSGQMLRSLGRLAPTVEKRARGCGMFQPPSL 213
            +SG  LR LG  A  +++   G GM+ P S+
Sbjct: 1039 ASGVELRCLGSFAAMLDQIGAGHGMWVPGSI 1069



 Score = 50.8 bits (120), Expect(2) = 3e-22
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = -2

Query: 549  WYDYEAGFWGVMGGPCLGIIPPFIADI 469
            WYD + GFWGV GGPC+GIIPP I ++
Sbjct: 957  WYDSQVGFWGVSGGPCVGIIPPLIEEL 983


>tr|Q6NQ63|Q6NQ63_ARATH At1g01440 OS=Arabidopsis thaliana
           GN=At1g01440 PE=2 SV=1
          Length = 664

 Score =  105 bits (261), Expect = 2e-21
 Identities = 50/96 (52%), Positives = 69/96 (71%)
 Frame = -3

Query: 500 LGSFRLLLQIFKLPLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISG 321
           LG     ++ F  P+  +C  G+T VFVNGRELH+RDL+ L+ RGLPR + ++Y++DI+G
Sbjct: 567 LGIIPPFIEEFSRPMPDNCGAGNTSVFVNGRELHERDLELLSSRGLPRGKNRSYIIDIAG 626

Query: 320 QVVDNSSGQMLRSLGRLAPTVEKRARGCGMFQPPSL 213
           +V+D  SG+ L+SLGRLAPTV+K   G GM  P SL
Sbjct: 627 RVLDGDSGEELKSLGRLAPTVDKVKHGFGMRVPRSL 662



 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIAD 472
           WYDY AGFWGVMG PCLGIIPPFI +
Sbjct: 551 WYDYRAGFWGVMGNPCLGIIPPFIEE 576


>tr|Q9M371|Q9M371_ARATH Putative uncharacterized protein F15G16.60
           OS=Arabidopsis thaliana GN=At3g61670 PE=1 SV=1
          Length = 790

 Score =  104 bits (260), Expect = 3e-21
 Identities = 49/93 (52%), Positives = 68/93 (73%)
 Frame = -3

Query: 500 LGSFRLLLQIFKLPLVKDCAGGSTEVFVNGRELHKRDLDALAGRGLPRTRGKAYMVDISG 321
           LG     ++    P+ ++C+GG+T VFVNGRELH++DLD LAGRGLP  R ++Y+VDI+G
Sbjct: 694 LGILPPFIEELNYPMPENCSGGTTGVFVNGRELHRKDLDLLAGRGLPPDRDRSYIVDITG 753

Query: 320 QVVDNSSGQMLRSLGRLAPTVEKRARGCGMFQP 222
           +V+D  +G+ L  LG+LAPT+EK  RG GM  P
Sbjct: 754 RVIDEDTGEELDCLGKLAPTIEKLKRGFGMRLP 786



 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = -2

Query: 549 WYDYEAGFWGVMGGPCLGIIPPFIADI 469
           WYDY AGFWGVMGGP LGI+PPFI ++
Sbjct: 678 WYDYRAGFWGVMGGPGLGILPPFIEEL 704