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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917593
Clone id YMU001_000102_G12
Library
Length 213
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGTAGCCTTTGCGCCGGACACTGCCCCGTGTGTGGTCCTCATTTTCCATCCACTGGCGC
TGCCCTAGCCGTCATTCCGCCTCCCTCTCCCTTCGCATATCCCACCCTGGCTCCTTCTTG
CCAACATTCTTGTCTCCACGTAGCTGTTGCTACAAGCCGCCATCACCGAGCCCCTTAAAA
AAAATCCCCAAAAATTTTGTCTTTCCCCCTCCC
■■Homology search results ■■ -
sp_hit_id Q9HCM7
Definition sp|Q9HCM7|AUT2L_HUMAN AUTS2-like protein OS=Homo sapiens
Align length 22
Score (bit) 25.0
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917593|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_G12.
         (199 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HCM7|AUT2L_HUMAN AUTS2-like protein OS=Homo sapiens GN=AUTS...    25   5.3  
sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japo...    29   6.4  
sp|Q6SPE9|SAMD1_RABIT Atherin OS=Oryctolagus cuniculus GN=SAMD1 ...    29   8.4  
sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus mus...    29   8.4  

>sp|Q9HCM7|AUT2L_HUMAN AUTS2-like protein OS=Homo sapiens GN=AUTS2L
           PE=2 SV=3
          Length = 972

 Score = 25.0 bits (53), Expect(2) = 5.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 38  PHFPSTGAALAVIPPPSPFAYP 103
           P FPSTGAA     P  P A+P
Sbjct: 576 PLFPSTGAAHPASNPFGPSAHP 597



 Score = 23.1 bits (48), Expect(2) = 5.3
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 100 SHPGSFLPT 126
           +HPGSFLPT
Sbjct: 595 AHPGSFLPT 603


>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp.
           japonica GN=YAB3 PE=2 SV=1
          Length = 313

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +2

Query: 17  GHCP------VCGPHFPSTGAALAVIPPPSPFAYPTLAPSCQHSCLHVAVATSRHHRA 172
           GHC       + G   P+T AA    PPP P   P  A    HS L++A A   HH +
Sbjct: 90  GHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHS-LNLAPANPPHHHS 146


>sp|Q6SPE9|SAMD1_RABIT Atherin OS=Oryctolagus cuniculus GN=SAMD1
           PE=2 SV=1
          Length = 550

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 17  GHCPVCGPHFPSTGAALAVIPPPSPFAYPTLAP 115
           G  P   P  P  G A A  PPP+P   P  AP
Sbjct: 106 GATPPAPPRAPRGGPAAAAAPPPTPAPPPPPAP 138


>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus
           musculus GN=Ubr5 PE=1 SV=2
          Length = 2792

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -3

Query: 116 KEPGWDMRREREAE*RLGQRQWMENE--DHTRGSVRRKG 6
           +E   ++ RERE+  RL +R+W++    D+ RGS  ++G
Sbjct: 295 RERDSELLRERESVLRLRERRWLDGASFDNERGSTSKEG 333
tr_hit_id Q19182
Definition tr|Q19182|Q19182_CAEEL Protein F07H5.8, partially confirmed by transcript evidence OS=Caenorhabditis elegans
Align length 51
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917593|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_G12.
         (199 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q19182|Q19182_CAEEL Protein F07H5.8, partially confirmed by t...    37   0.49 
tr|B8GAP1|B8GAP1_9CHLR Putative uncharacterized protein OS=Chlor...    35   2.4  
tr|A3BX14|A3BX14_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|B5DHB8|B5DHB8_DROPS GA25280 OS=Drosophila pseudoobscura pseud...    34   3.2  
tr|B4GKJ3|B4GKJ3_DROPE GL26098 OS=Drosophila persimilis GN=GL260...    34   3.2  
tr|B4GKI5|B4GKI5_DROPE GL26091 OS=Drosophila persimilis GN=GL260...    34   3.2  
tr|Q84P66|Q84P66_ORYSJ TF-like protein (Fragment) OS=Oryza sativ...    34   4.1  
tr|Q652W3|Q652W3_ORYSJ Putative TF-like protein OS=Oryza sativa ...    34   4.1  
tr|Q0DD61|Q0DD61_ORYSJ Os06g0252300 protein (Fragment) OS=Oryza ...    34   4.1  
tr|B8B0A0|B8B0A0_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|A3BAB5|A3BAB5_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|Q16990|Q16990_ACRDO Mini-collagen OS=Acropora donei PE=4 SV=1       33   5.4  
tr|A7UVD1|A7UVD1_ANOGA AGAP012236-PA (Fragment) OS=Anopheles gam...    33   5.4  
tr|A8WU59|A8WU59_CAEBR CBR-EHS-1 protein OS=Caenorhabditis brigg...    33   9.2  
tr|A0BR77|A0BR77_PARTE Chromosome undetermined scaffold_122, who...    33   9.2  

>tr|Q19182|Q19182_CAEEL Protein F07H5.8, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=F07H5.8
           PE=2 SV=2
          Length = 872

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 11  CAGHC-PVCGPHFPSTGAALAVI--PPPSPFAYPTLAPSCQHSCLHVAVAT 154
           CA  C P C P   S    L V+  PPP+P   P   P+CQ SC+     T
Sbjct: 650 CAPQCQPACDPQCISFTLKLPVMTTPPPTPSCQPQCQPACQPSCMETYTFT 700


>tr|B8GAP1|B8GAP1_9CHLR Putative uncharacterized protein
           OS=Chloroflexus aggregans DSM 9485 GN=Cagg_1729 PE=4
           SV=1
          Length = 437

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +2

Query: 38  PHFPSTGAALAVIPPPSPFAYPTLAPSCQHSCLHVAVATSRHHRAP 175
           PH    GA L   PPPSP   PT A  C  S  H   A  R  ++P
Sbjct: 125 PHRHRRGAVLHPPPPPSPARRPTAALRCPRSPHHRPTAAPRRTQSP 170


>tr|A3BX14|A3BX14_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027586 PE=4 SV=1
          Length = 1391

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -2

Query: 174 GAR*WRLVATATWRQECWQEGARVGYAKGEGGGMTARAAP 55
           GAR WR   TA WR  CW   A     +  G    AR  P
Sbjct: 218 GARPWRTTRTARWRAGCWAPAAPTPPRRARGTACRARRRP 257


>tr|B5DHB8|B5DHB8_DROPS GA25280 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA25280 PE=4 SV=1
          Length = 74

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 2   CSLCAGHCPVCGPHFPSTGAALAVIPPPSP 91
           C  C   CP CGPH P  GA   V   P+P
Sbjct: 14  CGPCGTTCPCCGPHSPPCGAPSPVPCSPAP 43


>tr|B4GKJ3|B4GKJ3_DROPE GL26098 OS=Drosophila persimilis GN=GL26098
           PE=4 SV=1
          Length = 187

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 2   CSLCAGHCPVCGPHFPSTGAALAVIPPPSP 91
           C  C   CP CGPH P  GA   V   P+P
Sbjct: 127 CGPCGTTCPCCGPHSPPCGAPSPVPCSPAP 156


>tr|B4GKI5|B4GKI5_DROPE GL26091 OS=Drosophila persimilis GN=GL26091
           PE=4 SV=1
          Length = 71

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 2   CSLCAGHCPVCGPHFPSTGAALAVIPPPSP 91
           C  C   CP CGPH P  GA   V   P+P
Sbjct: 11  CGPCGTTCPCCGPHSPPCGAPSPVPCSPAP 40


>tr|Q84P66|Q84P66_ORYSJ TF-like protein (Fragment) OS=Oryza sativa
           subsp. japonica PE=2 SV=1
          Length = 1017

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 8   LC-AGHCPVCGPHF---PSTGAALAVIPPPSPFAYPTLAPSCQHSCL 136
           LC +GHCP C        +       IPPP P   PT  PSC H CL
Sbjct: 463 LCHSGHCPPCLETIFNDLTCACGRTSIPPPLPCGTPT--PSCPHQCL 507


>tr|Q652W3|Q652W3_ORYSJ Putative TF-like protein OS=Oryza sativa
           subsp. japonica GN=P0046H10.13 PE=4 SV=1
          Length = 1117

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 8   LC-AGHCPVCGPHF---PSTGAALAVIPPPSPFAYPTLAPSCQHSCL 136
           LC +GHCP C        +       IPPP P   PT  PSC H CL
Sbjct: 548 LCHSGHCPPCLETIFNDLTCACGRTSIPPPLPCGTPT--PSCPHQCL 592


>tr|Q0DD61|Q0DD61_ORYSJ Os06g0252300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os06g0252300 PE=4 SV=1
          Length = 1016

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 8   LC-AGHCPVCGPHF---PSTGAALAVIPPPSPFAYPTLAPSCQHSCL 136
           LC +GHCP C        +       IPPP P   PT  PSC H CL
Sbjct: 463 LCHSGHCPPCLETIFNDLTCACGRTSIPPPLPCGTPT--PSCPHQCL 507


>tr|B8B0A0|B8B0A0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22395 PE=4 SV=1
          Length = 756

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 8   LC-AGHCPVCGPHF---PSTGAALAVIPPPSPFAYPTLAPSCQHSCL 136
           LC +GHCP C        +       IPPP P   PT  PSC H CL
Sbjct: 187 LCHSGHCPPCLETIFNDLTCACGRTSIPPPLPCGTPT--PSCPHQCL 231