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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917594
Clone id YMU001_000102_H02
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTGCCCGGGCCGGAGTGCCTGGGCGGCCGGACCAATGTGGACTGCATGCCACACTAATA
TATTGGTCCTCATTGAAGGGCAACCTCACCAGTCTCACGGTTGGGTGGAGAGCAGTTGTT
CTACCCCTCTCATGTGTAGTGTGTGTTGAGTGCATGCCCGGAGCGGCATGGCTATGCCCG
TAGTGGCGTAGTGCATGCGTTCGTGTAGTCGTAACATGCATTTGACATTGGTATCAGAGC
CGTGTCTTGGTTTGGGAGCGGCAAGACCGTTGTATTTCATTACGTACACACACTCCACTC
ATCAAGTCTCTCTCTTTCTCTCTCAAGCACAATTAAACCATTATTATCATTATCATTTAG
CAAATTATTACAAGCTTTCATTACGTACACACACTCCACTCATCAAGTCTCTCTCTTTCT
CTCTCAAGCACAATTAAATCATTATTATCATTACCATTCACTGTAGTAGCCACAGGACAC
ATGCGTCCAACCTTCCACCGGCACACATGCTACATTCAACAAGGCAAGTT
■■Homology search results ■■ -
sp_hit_id Q80W93
Definition sp|Q80W93|HYDIN_MOUSE Hydrocephalus-inducing protein OS=Mus musculus
Align length 89
Score (bit) 35.4
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917594|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_H02.
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80W93|HYDIN_MOUSE Hydrocephalus-inducing protein OS=Mus musc...    35   0.17 
sp|Q726E5|Y3208_DESVH UPF0078 membrane protein DVU_3208 OS=Desul...    32   2.5  
sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1     30   7.2  
sp|P27918|PROP_HUMAN Properdin OS=Homo sapiens GN=CFP PE=1 SV=2        30   7.2  
sp|A8AI11|MDTH_CITK8 Multidrug resistance protein mdtH OS=Citrob...    30   9.4  

>sp|Q80W93|HYDIN_MOUSE Hydrocephalus-inducing protein OS=Mus musculus
            GN=Hydin PE=2 SV=1
          Length = 5099

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -1

Query: 272  QRSCRSQTKTRL*YQC----QMHVTTTRTHALRHYGHSHAAPGMHST-HTTHERGRTTAL 108
            QRSCR  TK +L         + +   RTH ++    SH     H+     HE G +T L
Sbjct: 1568 QRSCRKLTKVQLPEYILDFGYIVLGDVRTHIVKITNTSHFPVSFHAEKQVLHETGFSTEL 1627

Query: 107  HPTVRLVRLPFNEDQYISVACSPHWSGRP 21
                R+  LP+ E +   V C P  +  P
Sbjct: 1628 D---RVKNLPYYETETFEVRCDPQGANLP 1653


>sp|Q726E5|Y3208_DESVH UPF0078 membrane protein DVU_3208
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=DVU_3208 PE=3 SV=1
          Length = 327

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +1

Query: 40  GLHATLIYWSSLKGNLTSLTVGWRAVVLPLSCVVCVECMPGAAWLCP*WRSACVRVVVTC 219
           G+   L +W  +   +  L V WR+  + L  +  V  MP    L   W+   + +VV  
Sbjct: 111 GVFLPLAFWPLVLSGIACLAVIWRSGFVSLGSLTLVTAMPAMLLLGGHWKLVPLALVVMV 170

Query: 220 I*HW 231
           + +W
Sbjct: 171 LVYW 174


>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1
          Length = 5147

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
 Frame = +3

Query: 3    CPGRSAWAAGPMWTACHTNILVLIEGQPHQSHGWVESSCSTPLMCSVC*VHARSGMAMPV 182
            CP    W++   WT C   +LV    Q ++  G           C+    H R  +    
Sbjct: 4362 CPEECVWSSWSSWTRCSCRVLV---QQRYRHQGPASRGARAGAPCTRLDGHFRPCL---- 4414

Query: 183  VA*CMR-SCSRNMHLTLVSEPCLGLGAARPLYFITYTHSTHQV 308
            ++ C   SC+          PC GL A         TH +HQ+
Sbjct: 4415 ISNCSEDSCTPPFEFHACGSPCAGLCA---------THLSHQL 4448


>sp|P27918|PROP_HUMAN Properdin OS=Homo sapiens GN=CFP PE=1 SV=2
          Length = 469

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +3

Query: 3   CPGRSAWAAGPMWTACHTNILVLIEGQPHQSHGWVESSCSTP 128
           CP   AWA    WT C  +      G PH+        CS P
Sbjct: 190 CPTHGAWATWGPWTPCSAS----CHGGPHEPKETRSRKCSAP 227


>sp|A8AI11|MDTH_CITK8 Multidrug resistance protein mdtH
           OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
           / SGSC4696) GN=mdtH PE=3 SV=1
          Length = 402

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +1

Query: 25  RPDQCGLHATLIYWSSLKGNLTSLTVG-WRA-----VVLPLSCVVCVECMPGAAWLCP*W 186
           RP+Q G   +L+      G +T   +G W       +V     V+ V C    AWL P W
Sbjct: 129 RPEQRGRFFSLLMMQDSAGAVTGALLGSWLLQYDFRLVCATGAVLFVLCAAFNAWLLPAW 188

Query: 187 RSACVRVVV 213
           + + V++ V
Sbjct: 189 KLSTVKIPV 197
tr_hit_id B6NYJ6
Definition tr|B6NYJ6|B6NYJ6_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 67
Score (bit) 34.3
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917594|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_H02.
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6NYJ6|B6NYJ6_BRAFL Putative uncharacterized protein OS=Branc...    34   4.0  
tr|A8NL29|A8NL29_COPC7 Putative uncharacterized protein OS=Copri...    33   9.0  
tr|Q5KN54|Q5KN54_CRYNE Expressed protein (Putative uncharacteriz...    28   9.1  

>tr|B6NYJ6|B6NYJ6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_100656 PE=4 SV=1
          Length = 275

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -1

Query: 200 THALRHYGHSHAAPGMHSTHTTHERGRTTALHPTVRLVRLPFNEDQYI--SVACSPHWSG 27
           TH+  H GHS   P MH+  T     + T +   +  ++ P +  QY+  S ACS H +G
Sbjct: 144 THSAGHTGHSTWTPAMHAAPT-----KLTTIPGLLLCIQYPLSWPQYLDSSHACSTHSAG 198

Query: 26  R-PGTPA 9
               TPA
Sbjct: 199 HSTWTPA 205


>tr|A8NL29|A8NL29_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_10472 PE=4 SV=1
          Length = 2629

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 197 HALRHYGHSHAAPGMHSTHTTHERGRTTALHPTVRLVR-LPFNEDQYISVACSPHWSG 27
           HA  H+ H H  P     H +H+R R  +  P+VR +R +  +     + A S  W G
Sbjct: 667 HAHSHHQHQHQPPNPPYLHYSHQRERRPSEAPSVRSIRSIAHSVRSSGTAATSSSWEG 724


>tr|Q5KN54|Q5KN54_CRYNE Expressed protein (Putative uncharacterized
           protein) OS=Cryptococcus neoformans GN=CNA07680 PE=4
           SV=1
          Length = 538

 Score = 27.7 bits (60), Expect(2) = 9.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 262 AAPKPRHGSDTNVKCM 215
           AAPKPRH   TN++C+
Sbjct: 17  AAPKPRHCRQTNMECL 32



 Score = 23.9 bits (50), Expect(2) = 9.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 188 RHYGHSHAAPGMHSTHTT 135
           +H    H  PGM STH T
Sbjct: 42  KHSAPQHRLPGMDSTHRT 59