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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917602
Clone id YMU001_000102_H11
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000102_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGCAAGATTTTAAAAATGAGCTCAAATGTACAACAGAGTTTACATTTTGCACCTATCGA
AATGTGGAAACCCATCTTGGTTCCAACAACTACATAATACAATCAGTTGCCATGTGGGCG
AACCTTTCATTGGCGAGGTGTCTATCAACTGACAAAGACTGAAGCCTTGCAAGCCTGCCA
CTATATATTCAAGGTTGTGCGGCCATTCATCACCTTGAAAATTGCCATTGCGAATGGATA
CTCCAATATTGAGACCGGACTCCTTCAAGAACACCAAACTTGATTTGCTTCCATTCGATT
TTGCTTCTTTTGGGGTATGCCCCTACATCTACCCATACCAAATTTTTCCCATCTTGAATA
TATTACAGACCTCAGACTT
■■Homology search results ■■ -
sp_hit_id Q61282
Definition sp|Q61282|PGCA_MOUSE Aggrecan core protein OS=Mus musculus
Align length 58
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917602|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_H11.
         (379 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61282|PGCA_MOUSE Aggrecan core protein OS=Mus musculus GN=Ac...    33   0.44 
sp|Q28343|PGCA_CANFA Aggrecan core protein OS=Canis familiaris G...    33   0.57 
sp|P13608|PGCA_BOVIN Aggrecan core protein OS=Bos taurus GN=ACAN...    32   0.74 
sp|Q9C2U9|GLNA_GIBFU Glutamine synthetase OS=Gibberella fujikuro...    32   1.3  
sp|A1JSF2|MALT_YERE8 HTH-type transcriptional regulator malT OS=...    31   1.7  
sp|Q664J3|MALT_YERPS HTH-type transcriptional regulator malT OS=...    31   2.2  
sp|A4TGR4|MALT_YERPP HTH-type transcriptional regulator malT OS=...    31   2.2  
sp|Q8ZJI2|MALT_YERPE HTH-type transcriptional regulator malT OS=...    31   2.2  
sp|Q1C2L4|MALT_YERPA HTH-type transcriptional regulator malT OS=...    31   2.2  
sp|A7FNW4|MALT_YERP3 HTH-type transcriptional regulator malT OS=...    31   2.2  
sp|P16112|PGCA_HUMAN Aggrecan core protein OS=Homo sapiens GN=AC...    30   3.7  
sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajello...    30   4.8  
sp|O13995|DAP1_SCHPO Cytochrome P450 regulator dap1 OS=Schizosac...    30   4.8  
sp|Q7VFV4|MDH_HELHP Malate dehydrogenase OS=Helicobacter hepatic...    29   6.3  
sp|P07898|PGCA_CHICK Aggrecan core protein OS=Gallus gallus GN=A...    29   8.2  
sp|Q9UUN6|GLNA_FUSSH Glutamine synthetase OS=Fusarium solani sub...    29   8.2  
sp|O27710|COMA_METTH Phosphosulfolactate synthase OS=Methanobact...    29   8.2  

>sp|Q61282|PGCA_MOUSE Aggrecan core protein OS=Mus musculus GN=Acan
           PE=1 SV=1
          Length = 2132

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 107 LPCGRTFHWRGV---YQLTKTEALQACHYIFKVVRPFITLKIAIANGYSNIETGLLQE 271
           LP G  FH+R     Y LT  EA QAC +   ++     L+ A   GY   + G LQ+
Sbjct: 483 LPGGVVFHYRPGSTRYSLTFEEAQQACMHTGAIIASPEQLQAAYEAGYEQCDAGWLQD 540


>sp|Q28343|PGCA_CANFA Aggrecan core protein OS=Canis familiaris
           GN=ACAN PE=2 SV=2
          Length = 2333

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 104 QLPCGRTFHWR---GVYQLTKTEALQACHYIFKVVRPFITLKIAIANGYSNIETGLLQE 271
           +LP G  FH+R     Y LT  EA QAC     V+     L+ A   GY   + G LQ+
Sbjct: 491 RLPGGVVFHYRPGSARYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLQD 549


>sp|P13608|PGCA_BOVIN Aggrecan core protein OS=Bos taurus GN=ACAN
           PE=1 SV=3
          Length = 2364

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 104 QLPCGRTFHWR---GVYQLTKTEALQACHYIFKVVRPFITLKIAIANGYSNIETGLLQE 271
           +LP G  FH+R     Y LT  EA QAC     ++     L+ A   GY   + G LQ+
Sbjct: 482 RLPGGVVFHYRPGSSRYSLTFEEAKQACLRTGAIIASPEQLQAAYEAGYEQCDAGWLQD 540


>sp|Q9C2U9|GLNA_GIBFU Glutamine synthetase OS=Gibberella fujikuroi
           GN=GLN1 PE=3 SV=1
          Length = 353

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 133 PMKGSPTWQLIVLCSCWNQDGFPH 62
           P +GSP   +IVL  CWN DG P+
Sbjct: 85  PFRGSPN--IIVLAECWNADGTPN 106


>sp|A1JSF2|MALT_YERE8 HTH-type transcriptional regulator malT
           OS=Yersinia enterocolitica serotype O:8 / biotype 1B
           (strain 8081) GN=malT PE=3 SV=1
          Length = 903

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 97  IQSVAMWANLSLARCLSTDKD*SLASLPLYIQGCAAIHHLENCHCEWI 240
           +Q +AM A  SLAR         L +  +YIQ C A+ H    H +WI
Sbjct: 612 LQCLAMLAKCSLARG-------DLDNANMYIQRCEALQHGSQYHLDWI 652


>sp|Q664J3|MALT_YERPS HTH-type transcriptional regulator malT
           OS=Yersinia pseudotuberculosis GN=malT PE=3 SV=1
          Length = 903

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 97  IQSVAMWANLSLARCLSTDKD*SLASLPLYIQGCAAIHHLENCHCEWI 240
           +Q +AM A  SLAR         L +  +YIQ C A+ H    H +WI
Sbjct: 612 LQCLAMLAKCSLARG-------DLDNANVYIQRCEALQHGSQYHLDWI 652


>sp|A4TGR4|MALT_YERPP HTH-type transcriptional regulator malT
           OS=Yersinia pestis (strain Pestoides F) GN=malT PE=3
           SV=1
          Length = 903

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 97  IQSVAMWANLSLARCLSTDKD*SLASLPLYIQGCAAIHHLENCHCEWI 240
           +Q +AM A  SLAR         L +  +YIQ C A+ H    H +WI
Sbjct: 612 LQCLAMLAKCSLARG-------DLDNANVYIQRCEALQHGSQYHLDWI 652


>sp|Q8ZJI2|MALT_YERPE HTH-type transcriptional regulator malT
           OS=Yersinia pestis GN=malT PE=3 SV=1
          Length = 903

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 97  IQSVAMWANLSLARCLSTDKD*SLASLPLYIQGCAAIHHLENCHCEWI 240
           +Q +AM A  SLAR         L +  +YIQ C A+ H    H +WI
Sbjct: 612 LQCLAMLAKCSLARG-------DLDNANVYIQRCEALQHGSQYHLDWI 652


>sp|Q1C2L4|MALT_YERPA HTH-type transcriptional regulator malT
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=malT
           PE=3 SV=1
          Length = 903

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 97  IQSVAMWANLSLARCLSTDKD*SLASLPLYIQGCAAIHHLENCHCEWI 240
           +Q +AM A  SLAR         L +  +YIQ C A+ H    H +WI
Sbjct: 612 LQCLAMLAKCSLARG-------DLDNANVYIQRCEALQHGSQYHLDWI 652


>sp|A7FNW4|MALT_YERP3 HTH-type transcriptional regulator malT
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=malT PE=3 SV=1
          Length = 903

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 97  IQSVAMWANLSLARCLSTDKD*SLASLPLYIQGCAAIHHLENCHCEWI 240
           +Q +AM A  SLAR         L +  +YIQ C A+ H    H +WI
Sbjct: 612 LQCLAMLAKCSLARG-------DLDNANVYIQRCEALQHGSQYHLDWI 652
tr_hit_id Q9BGH3
Definition tr|Q9BGH3|Q9BGH3_PIG Aggrecan G2 domain (Fragment) OS=Sus scrofa
Align length 59
Score (bit) 32.7
E-value 9.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917602|Adiantum capillus-veneris mRNA, clone:
YMU001_000102_H11.
         (379 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9BGH3|Q9BGH3_PIG Aggrecan G2 domain (Fragment) OS=Sus scrofa...    33   9.1  

>tr|Q9BGH3|Q9BGH3_PIG Aggrecan G2 domain (Fragment) OS=Sus scrofa
           PE=2 SV=1
          Length = 494

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 104 QLPCGRTFHWR---GVYQLTKTEALQACHYIFKVVRPFITLKIAIANGYSNIETGLLQE 271
           +LP G  FH+R     Y LT  EA QAC     V+     L+ A   GY   + G LQ+
Sbjct: 143 RLPGGVVFHYRQGSSRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLQD 201